F177234
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 139 | 111 | 278 | 239 |
Family's Representative Sequence
| Representative Sequence | 3300044901|Ga0466960_0031384|Ga0466960_0031384_846_1655 |
| Length | 269 |
| Sequence | VKDLLVWLNDPLNWTGTRFSPGIVEQIAAHLGYTAIALAIAGVIAFPLGLALGHTGRASWLVALANGLRSLPTVGLLILLYVVVSPLISGRGDAVYLVPTEIVLVLLALPAILANTYAGVRNVDPAARDAARGMGMTGRQVLFRVELPNALPLVFSGVRSAALQVIATATIAAYVGLGGLGRYVYDGLAQHDFGQMAGGAVLVAALAVLVDLVLALVQRLTVSRGVSGRFRRAPAGDSRTAAVTELAGEDAAPRPDRNAVQSPTPTSPG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 2 | 3300002067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 5 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 12 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 14 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 15 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 17 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 18 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 20 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 22 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 23 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 24 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 25 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 26 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 40 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 41 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 42 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 43 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 44 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 45 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 46 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 47 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 48 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 49 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 50 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 51 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 52 | 3300031838 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM | Metagenome | Unclassified |
| 53 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 54 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 55 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 56 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 57 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 58 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 59 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 60 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 61 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 62 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 63 | 3300041451 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG | Metagenome | Rhizoplane |
| 64 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 65 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 66 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 67 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 68 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 69 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 70 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 71 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 72 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 73 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 74 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046615 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046674 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300047447 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 83 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 84 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 85 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 86 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 87 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 88 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 89 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 90 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 91 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 92 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 93 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 94 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 95 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 96 | 3300053098 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere | Metagenome | Endosphere |
| 97 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 98 | 2558860280 | Kutzneria sp. 744 | Isolate | Unclassified |
| 99 | 2585427649 | Amycolatopsis japonica MG417-CF17, DSM 44213 | Isolate | Unclassified |
| 100 | 2643221681 | Aeromicrobium sp. Root472D3 | Isolate | Unclassified |
| 101 | 2808606447 | Microbacterium sp. HAR-UPW-R2A-48 | Isolate | Unclassified |
| 102 | 2808606522 | Amycolatopsis sp. BJA-103 | Isolate | Unclassified |
| 103 | 2818991472 | Kitasatospora viridis DSM 44826 | Isolate | Rhizosphere |
| 104 | 2863067949 | Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) | Isolate | Rhizosphere |
| 105 | 2866552031 | Saccharopolyspora rhizosphaerae H219 | Isolate | Unclassified |
| 106 | 2866612099 | Amycolatopsis suaedae 8-3EHSu | Isolate | Unclassified |
| 107 | 2899359706 | Amycolatopsis anabasis EGI 650086 | Isolate | Unclassified |
| 108 | 2915768154 | Amycolatopsis pittospori PIP199 | Isolate | Unclassified |
| 109 | 2917736166 | Amycolatopsis dendrobii DR6-1 | Isolate | Unclassified |
| 110 | 3001889506 | Janibacter sp. YIM B02568 | Isolate | Unclassified |
| 111 | 8003314358 | Amycolatopsis sp. MtRt-6 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.21 |
| Metatranscriptomes | 0.72 |
| Isolates | 10.07 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.47 |
| Nodule | 0 |
| Rhizoplane | 4.32 |
| Rhizosphere | 65.47 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 2.16 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0466960_0031384 | 3300044901 | Bacteria | 2452 |
| 2 | JGI24735J21928_10005635 | 3300002067 | Bacteria | 4145 |
| 3 | Ga0070658_10224889 | 3300005327 | Bacteria | 1588 |
| 4 | Ga0070658_10286175 | 3300005327 | Bacteria | 1404 |
| 5 | Ga0068868_100514159 | 3300005338 | Unclassified | 1050 |
| 6 | Ga0070668_100020675 | 3300005347 | Bacteria | 4969 |
| 7 | Ga0070667_100572567 | 3300005367 | Bacteria | 1039 |
| 8 | Ga0070714_100000010 | 3300005435 | Bacteria | 262871 |
| 9 | Ga0070714_100003958 | 3300005435 | Bacteria | 11136 |
| 10 | Ga0070663_100001532 | 3300005455 | Bacteria | 12715 |
| 11 | Ga0070679_100284540 | 3300005530 | Bacteria | 1605 |
| 12 | Ga0070684_100219268 | 3300005535 | Bacteria | 1736 |
| 13 | Ga0068853_100015894 | 3300005539 | Bacteria | 6183 |
| 14 | Ga0070665_100518821 | 3300005548 | Bacteria | 1203 |
| 15 | Ga0068856_100082639 | 3300005614 | Bacteria | 3188 |
| 16 | Ga0068852_100051120 | 3300005616 | Bacteria | 3545 |
| 17 | Ga0070717_10089525 | 3300006028 | Bacteria | 2596 |
| 18 | Ga0075365_10417783 | 3300006038 | Bacteria | 947 |
| 19 | Ga0075364_10442468 | 3300006051 | Bacteria | 888 |
| 20 | Ga0105245_10088241 | 3300009098 | Bacteria | 2848 |
| 21 | Ga0105243_10092602 | 3300009148 | Bacteria | 2492 |
| 22 | Ga0105238_10033681 | 3300009551 | Bacteria | 5212 |
| 23 | Ga0105238_10315859 | 3300009551 | Bacteria | 1548 |
| 24 | Ga0157369_10011428 | 3300013105 | Bacteria | 10083 |
| 25 | Ga0157369_10037092 | 3300013105 | Bacteria | 5338 |
| 26 | Ga0157372_10405747 | 3300013307 | Bacteria | 1588 |
| 27 | Ga0157380_10045959 | 3300014326 | Bacteria | 3428 |
| 28 | Ga0206353_11422174 | 3300020082 | Bacteria | 5197 |
| 29 | Ga0213875_10000678 | 3300021388 | Bacteria | 26732 |
| 30 | Ga0207705_10110140 | 3300025909 | Bacteria | 2034 |
| 31 | Ga0207660_10040185 | 3300025917 | Bacteria | 3274 |
| 32 | Ga0207652_10764393 | 3300025921 | Bacteria | 859 |
| 33 | Ga0207694_10620845 | 3300025924 | Bacteria | 910 |
| 34 | Ga0207700_10111660 | 3300025928 | Bacteria | 2201 |
| 35 | Ga0207664_10000009 | 3300025929 | Bacteria | 299246 |
| 36 | Ga0207664_10001960 | 3300025929 | Bacteria | 13565 |
| 37 | Ga0207668_10046607 | 3300025972 | Bacteria | 2962 |
| 38 | Ga0207658_10499805 | 3300025986 | Bacteria | 1083 |
| 39 | Ga0207677_10680698 | 3300026023 | Unclassified | 911 |
| 40 | Ga0207639_10070279 | 3300026041 | Bacteria | 2734 |
| 41 | Ga0207678_10000289 | 3300026067 | Bacteria | 45690 |
| 42 | Ga0207678_10073323 | 3300026067 | Bacteria | 2934 |
| 43 | Ga0207698_10231675 | 3300026142 | Bacteria | 1677 |
| 44 | Ga0207698_10590711 | 3300026142 | Bacteria | 1093 |
| 45 | Ga0268266_10518860 | 3300028379 | Bacteria | 1139 |
| 46 | Ga0307517_10231230 | 3300028786 | Bacteria | 1109 |
| 47 | Ga0307515_10014040 | 3300028794 | Bacteria | 14900 |
| 48 | Ga0307515_10088827 | 3300028794 | Bacteria | 3900 |
| 49 | Ga0307511_10016453 | 3300030521 | Bacteria | 7126 |
| 50 | Ga0307512_10048377 | 3300030522 | Bacteria | 3443 |
| 51 | Ga0307513_10008427 | 3300031456 | Bacteria | 13202 |
| 52 | Ga0307508_10002873 | 3300031616 | Bacteria | 17848 |
| 53 | Ga0316575_10052383 | 3300031665 | Bacteria | 1625 |
| 54 | Ga0316579_10006916 | 3300031691 | Bacteria | 4656 |
| 55 | Ga0316576_10059867 | 3300031727 | Bacteria | 2788 |
| 56 | Ga0316576_10084670 | 3300031727 | Bacteria | 2356 |
| 57 | Ga0316576_10149158 | 3300031727 | Bacteria | 1762 |
| 58 | Ga0316578_10012006 | 3300031728 | Bacteria | 4557 |
| 59 | Ga0316578_10035498 | 3300031728 | Bacteria | 2867 |
| 60 | Ga0316578_10037770 | 3300031728 | Bacteria | 2782 |
| 61 | Ga0307516_10237942 | 3300031730 | Bacteria | 1521 |
| 62 | Ga0316577_10024515 | 3300031733 | Bacteria | 3354 |
| 63 | Ga0307413_10004618 | 3300031824 | Bacteria | 6021 |
| 64 | Ga0307518_10000287 | 3300031838 | Bacteria | 38350 |
| 65 | Ga0316583_10013620 | 3300032133 | Bacteria | 2936 |
| 66 | Ga0307510_10076546 | 3300033180 | Bacteria | 3290 |
| 67 | Ga0307510_10176197 | 3300033180 | Bacteria | 1709 |
| 68 | Ga0316574_0006708 | 3300035398 | Bacteria | 6249 |
| 69 | Ga0316574_0045849 | 3300035398 | Bacteria | 2708 |
| 70 | Ga0316574_0046106 | 3300035398 | Bacteria | 2701 |
| 71 | Ga0316582_0010972 | 3300036647 | Bacteria | 4991 |
| 72 | Ga0316582_0020408 | 3300036647 | Bacteria | 3896 |
| 73 | Ga0316584_0116747 | 3300036712 | Bacteria | 1995 |
| 74 | Ga0395900_0096934 | 3300037418 | Bacteria | 3030 |
| 75 | Ga0395898_0080992 | 3300037466 | Bacteria | 3131 |
| 76 | Ga0395898_0806592 | 3300037466 | Bacteria | 879 |
| 77 | Ga0395905_0275080 | 3300037471 | Bacteria | 1570 |
| 78 | Ga0436364_0287407 | 3300037853 | Bacteria | 132611 |
| 79 | Ga0395901_0012288 | 3300038443 | Bacteria | 8690 |
| 80 | Ga0451791_0351369 | 3300041451 | Bacteria | 835 |
| 81 | Ga0439457_020376 | 3300042014 | Bacteria | 1472 |
| 82 | Ga0466969_0000761 | 3300044656 | Bacteria | 17512 |
| 83 | Ga0466969_0079643 | 3300044656 | Bacteria | 1565 |
| 84 | Ga0466966_0128222 | 3300044684 | Bacteria | 1554 |
| 85 | Ga0466961_0008098 | 3300044693 | Bacteria | 6694 |
| 86 | Ga0466961_0015797 | 3300044693 | Bacteria | 4844 |
| 87 | Ga0466964_0149377 | 3300044706 | Unclassified | 1082 |
| 88 | Ga0466968_0066434 | 3300044735 | Bacteria | 1562 |
| 89 | Ga0466970_0032237 | 3300044765 | Bacteria | 2768 |
| 90 | Ga0466970_0151799 | 3300044765 | Bacteria | 1279 |
| 91 | Ga0466959_0003927 | 3300045049 | Bacteria | 9873 |
| 92 | Ga0466959_0045541 | 3300045049 | Bacteria | 3230 |
| 93 | Ga0466959_0247152 | 3300045049 | Bacteria | 1231 |
| 94 | Ga0466958_0033230 | 3300045836 | Bacteria | 3072 |
| 95 | Ga0466967_0054738 | 3300045976 | Bacteria | 3513 |
| 96 | Ga0466967_0173445 | 3300045976 | Bacteria | 2030 |
| 97 | Ga0466967_0679693 | 3300045976 | Bacteria | 1019 |
| 98 | Ga0495662_0047610 | 3300046476 | Bacteria | 2070 |
| 99 | Ga0495632_0049187 | 3300046519 | Bacteria | 2085 |
| 100 | Ga0495656_0174808 | 3300046615 | Bacteria | 1052 |
| 101 | Ga0495588_0073176 | 3300046674 | Bacteria | 1784 |
| 102 | Ga0495581_0064560 | 3300047315 | Bacteria | 2115 |
| 103 | Ga0495604_0008362 | 3300047317 | Bacteria | 8182 |
| 104 | Ga0495687_002839 | 3300047443 | Bacteria | 13335 |
| 105 | Ga0495685_023366 | 3300047447 | Bacteria | 2129 |
| 106 | Ga0496104_0078589 | 3300048907 | Bacteria | 3144 |
| 107 | Ga0496105_0115978 | 3300048908 | Bacteria | 2209 |
| 108 | Ga0496110_0078877 | 3300048913 | Bacteria | 2931 |
| 109 | Ga0496110_0129302 | 3300048913 | Bacteria | 2280 |
| 110 | Ga0496111_0131370 | 3300048914 | Bacteria | 1853 |
| 111 | Ga0496117_0001917 | 3300048920 | Bacteria | 27871 |
| 112 | Ga0496118_0048311 | 3300048921 | Bacteria | 3289 |
| 113 | Ga0496122_0026674 | 3300048925 | Bacteria | 4971 |
| 114 | Ga0496122_0029535 | 3300048925 | Bacteria | 4622 |
| 115 | Ga0496124_0107179 | 3300048927 | Bacteria | 2255 |
| 116 | Ga0496125_0013738 | 3300048928 | Bacteria | 7938 |
| 117 | Ga0496125_0025090 | 3300048928 | Bacteria | 5468 |
| 118 | Ga0496126_0013257 | 3300048929 | Bacteria | 8400 |
| 119 | nmdc:mga0yw44_267161_c1 | 3300050492 | Bacteria | 1141 |
| 120 | Ga0500644_0210649 | 3300053088 | Bacteria | 807 |
| 121 | Ga0500651_0037708 | 3300053093 | Bacteria | 3046 |
| 122 | Ga0500641_0004814 | 3300053096 | Bacteria | 4780 |
| 123 | Ga0500641_0205281 | 3300053096 | Bacteria | 840 |
| 124 | Ga0500650_0140204 | 3300053098 | Bacteria | 1121 |
| 125 | Ga0500616_0000116 | 3300053153 | Bacteria | 145790 |
| 126 | 2559429130 | 2558860280 | Bacteria | 11429938 |
| 127 | 2586058408 | 2585427649 | Bacteria | 9053857 |
| 128 | 2644454753 | 2643221681 | Bacteria | 3707866 |
| 129 | 2809227864 | 2808606447 | Bacteria | 3572005 |
| 130 | 2809592746 | 2808606522 | Bacteria | 9488490 |
| 131 | 2819739362 | 2818991472 | Bacteria | 10089953 |
| 132 | 2863070756 | 2863067949 | Bacteria | 8541735 |
| 133 | 2866555290 | 2866552031 | Bacteria | 5824618 |
| 134 | 2866613502 | 2866612099 | Bacteria | 7543886 |
| 135 | 2899367280 | 2899359706 | Bacteria | 10940472 |
| 136 | 2915770959 | 2915768154 | Bacteria | 8424322 |
| 137 | 2917740145 | 2917736166 | Bacteria | 9690793 |
| 138 | 3001889634 | 3001889506 | Bacteria | 2975194 |
| 139 | 8003315833 | 8003314358 | Bacteria | 10575343 |
| 140 | Ga0466960_0031384 | |||
| 141 | JGI24735J21928_10005635 | |||
| 142 | Ga0070658_10224889 | |||
| 143 | Ga0070658_10286175 | |||
| 144 | Ga0068868_100514159 | |||
| 145 | Ga0070668_100020675 | |||
| 146 | Ga0070667_100572567 | |||
| 147 | Ga0070714_100000010 | |||
| 148 | Ga0070714_100003958 | |||
| 149 | Ga0070663_100001532 | |||
| 150 | Ga0070679_100284540 | |||
| 151 | Ga0070684_100219268 | |||
| 152 | Ga0068853_100015894 | |||
| 153 | Ga0070665_100518821 | |||
| 154 | Ga0068856_100082639 | |||
| 155 | Ga0068852_100051120 | |||
| 156 | Ga0070717_10089525 | |||
| 157 | Ga0075365_10417783 | |||
| 158 | Ga0075364_10442468 | |||
| 159 | Ga0105245_10088241 | |||
| 160 | Ga0105243_10092602 | |||
| 161 | Ga0105238_10033681 | |||
| 162 | Ga0105238_10315859 | |||
| 163 | Ga0157369_10011428 | |||
| 164 | Ga0157369_10037092 | |||
| 165 | Ga0157372_10405747 | |||
| 166 | Ga0157380_10045959 | |||
| 167 | Ga0206353_11422174 | |||
| 168 | Ga0213875_10000678 | |||
| 169 | Ga0207705_10110140 | |||
| 170 | Ga0207660_10040185 | |||
| 171 | Ga0207652_10764393 | |||
| 172 | Ga0207694_10620845 | |||
| 173 | Ga0207700_10111660 | |||
| 174 | Ga0207664_10000009 | |||
| 175 | Ga0207664_10001960 | |||
| 176 | Ga0207668_10046607 | |||
| 177 | Ga0207658_10499805 | |||
| 178 | Ga0207677_10680698 | |||
| 179 | Ga0207639_10070279 | |||
| 180 | Ga0207678_10000289 | |||
| 181 | Ga0207678_10073323 | |||
| 182 | Ga0207698_10231675 | |||
| 183 | Ga0207698_10590711 | |||
| 184 | Ga0268266_10518860 | |||
| 185 | Ga0307517_10231230 | |||
| 186 | Ga0307515_10014040 | |||
| 187 | Ga0307515_10088827 | |||
| 188 | Ga0307511_10016453 | |||
| 189 | Ga0307512_10048377 | |||
| 190 | Ga0307513_10008427 | |||
| 191 | Ga0307508_10002873 | |||
| 192 | Ga0316575_10052383 | |||
| 193 | Ga0316579_10006916 | |||
| 194 | Ga0316576_10059867 | |||
| 195 | Ga0316576_10084670 | |||
| 196 | Ga0316576_10149158 | |||
| 197 | Ga0316578_10012006 | |||
| 198 | Ga0316578_10035498 | |||
| 199 | Ga0316578_10037770 | |||
| 200 | Ga0307516_10237942 | |||
| 201 | Ga0316577_10024515 | |||
| 202 | Ga0307413_10004618 | |||
| 203 | Ga0307518_10000287 | |||
| 204 | Ga0316583_10013620 | |||
| 205 | Ga0307510_10076546 | |||
| 206 | Ga0307510_10176197 | |||
| 207 | Ga0316574_0006708 | |||
| 208 | Ga0316574_0045849 | |||
| 209 | Ga0316574_0046106 | |||
| 210 | Ga0316582_0010972 | |||
| 211 | Ga0316582_0020408 | |||
| 212 | Ga0316584_0116747 | |||
| 213 | Ga0395900_0096934 | |||
| 214 | Ga0395898_0080992 | |||
| 215 | Ga0395898_0806592 | |||
| 216 | Ga0395905_0275080 | |||
| 217 | Ga0436364_0287407 | |||
| 218 | Ga0395901_0012288 | |||
| 219 | Ga0451791_0351369 | |||
| 220 | Ga0439457_020376 | |||
| 221 | Ga0466969_0000761 | |||
| 222 | Ga0466969_0079643 | |||
| 223 | Ga0466966_0128222 | |||
| 224 | Ga0466961_0008098 | |||
| 225 | Ga0466961_0015797 | |||
| 226 | Ga0466964_0149377 | |||
| 227 | Ga0466968_0066434 | |||
| 228 | Ga0466970_0032237 | |||
| 229 | Ga0466970_0151799 | |||
| 230 | Ga0466959_0003927 | |||
| 231 | Ga0466959_0045541 | |||
| 232 | Ga0466959_0247152 | |||
| 233 | Ga0466958_0033230 | |||
| 234 | Ga0466967_0054738 | |||
| 235 | Ga0466967_0173445 | |||
| 236 | Ga0466967_0679693 | |||
| 237 | Ga0495662_0047610 | |||
| 238 | Ga0495632_0049187 | |||
| 239 | Ga0495656_0174808 | |||
| 240 | Ga0495588_0073176 | |||
| 241 | Ga0495581_0064560 | |||
| 242 | Ga0495604_0008362 | |||
| 243 | Ga0495687_002839 | |||
| 244 | Ga0495685_023366 | |||
| 245 | Ga0496104_0078589 | |||
| 246 | Ga0496105_0115978 | |||
| 247 | Ga0496110_0078877 | |||
| 248 | Ga0496110_0129302 | |||
| 249 | Ga0496111_0131370 | |||
| 250 | Ga0496117_0001917 | |||
| 251 | Ga0496118_0048311 | |||
| 252 | Ga0496122_0026674 | |||
| 253 | Ga0496122_0029535 | |||
| 254 | Ga0496124_0107179 | |||
| 255 | Ga0496125_0013738 | |||
| 256 | Ga0496125_0025090 | |||
| 257 | Ga0496126_0013257 | |||
| 258 | nmdc:mga0yw44_267161_c1 | |||
| 259 | Ga0500644_0210649 | |||
| 260 | Ga0500651_0037708 | |||
| 261 | Ga0500641_0004814 | |||
| 262 | Ga0500641_0205281 | |||
| 263 | Ga0500650_0140204 | |||
| 264 | Ga0500616_0000116 | |||
| 265 | 2559429130 | |||
| 266 | 2586058408 | |||
| 267 | 2644454753 | |||
| 268 | 2809227864 | |||
| 269 | 2809592746 | |||
| 270 | 2819739362 | |||
| 271 | 2863070756 | |||
| 272 | 2866555290 | |||
| 273 | 2866613502 | |||
| 274 | 2899367280 | |||
| 275 | 2915770959 | |||
| 276 | 2917740145 | |||
| 277 | 3001889634 | |||
| 278 | 8003315833 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
PF00528
BPD_transp_1
Binding-protein-dependent transport system inner membrane component
41
224
0.82
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 7ahc-assembly1.cif.gz_B | opua apo inward-facing | 0.8826 | 20 | 217 |
| 7ahh-assembly1.cif.gz_A | opua inhibited inward-facing, sbd docked | 0.8772 | 5 | 217 |
| 7ahh-assembly1.cif.gz_B | opua inhibited inward-facing, sbd docked | 0.8736 | 2 | 217 |
| 7ahd-assembly1.cif.gz_B | opua (e190q) occluded | 0.834 | 2 | 217 |
| 3tuz-assembly2.cif.gz_F | inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form | 0.8077 | 26 | 223 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_O69722_23_210_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9522 | 22 | 216 | 1.10.3720.10 |
| af_O69722_23_210_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9374 | 22 | 216 | 1.10.3720.10 |
| af_Q2G088_14_207_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9319 | 21 | 217 | 1.10.3720.10 |
| af_Q2FVG9_10_202_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.917 | 21 | 219 | 1.10.3720.10 |
| af_Q2FVH1_15_213_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.9129 | 21 | 219 | 1.10.3720.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A318LXL0-F1-model_v4 | ABC transporter permease | 0.9747 | 1 | 226 |
GO:0005886
GO:0031460 GO:0055085 |
| AF-A0A176L7L2-F1-model_v4 | deleted | 0.9747 | 2 | 218 |
|
| AF-F3ZLM8-F1-model_v4 | Putative ABC transporter permease | 0.9743 | 2 | 223 |
GO:0005886
GO:0031460 GO:0055085 |
| AF-A0A7V9BLZ9-F1-model_v4 | ABC transporter permease | 0.9736 | 1 | 226 |
GO:0005886
GO:0031460 GO:0055085 |
| AF-S2YQ46-F1-model_v4 | ABC transmembrane type-1 domain-containing protein | 0.9732 | 3 | 218 |
GO:0005886
GO:0031460 GO:0055085 |