F176393

General Info

Members Datasets Scaffolds Average Seq Length
139 104 137 420

Family's Representative Sequence

Representative Sequence 3300014968|Ga0157379_10049857|Ga0157379_100498571
Length 498
Sequence MVGGQELMWSYPGKRSQPFSVRLNMPDIDDGETVEIQGSAKDPYILRNVGGVYSCTCPAWRNQSTAIEKRTCKHLRQYCGEDAEKERLGGEIPTNAARPRKALLAHSWTTDVDLTGWWMSEKLDGVRAYWDGTQFISRQGNVYHAPDWFIEDLPKDVHLDGELWLSRKGFQRAVSIVRRQDKSDHWKEITYLVFDAPAVDDVFEARMAYISQLLDEAQPKYARPHTHERCKGTDHLREELARVEELGGEGLMMRKPSSKYEVGRSFSLLKVKSMHDAEARVIEHLPGTGRHKGRLGALSVELANGTKFSVGTGFSDSERDNPPPIGSVITFRYQELSDRGVPRFPAFVRVRTDIDELTFNVDGEPAGVKVLAGATSVKTGNPTANSANVKVLKAVATPAVVQSGSRPSGATGPRMFEFTEGTSSKFWEVVLAGNDVIVRFGKIGTAGMTKPKPFPSPAAAKKYYEDLIGEKTGKGYVEVGKSPSTTRGDEDFEEDDDE

Samples

Sample ID Description Type Environment
1 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
2 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
20 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
25 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
57 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
78 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
79 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
80 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
85 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
89 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
97 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
102 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
103 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
104 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.56
Metatranscriptomes 0
Isolates 1.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.44
Rhizosphere 94.24
Stem 0
Stem Tuber 0
Unclassified 4.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10060269 3300003323 Bacteria 9584
2 Ga0065712_10069799 3300005290 Bacteria 6683
3 Ga0070676_10007587 3300005328 Bacteria 5826
4 Ga0070676_10123119 3300005328 Bacteria 1631
5 Ga0070683_100033577 3300005329 Bacteria 4680
6 Ga0070690_100012319 3300005330 Bacteria 5031
7 Ga0070690_100052051 3300005330 Bacteria 2616
8 Ga0070666_10037521 3300005335 Bacteria 3222
9 Ga0068868_100092552 3300005338 Bacteria 2437
10 Ga0070689_100011936 3300005340 Bacteria 6239
11 Ga0070689_100046454 3300005340 Bacteria 3346
12 Ga0070689_100080519 3300005340 Viruses 2556
13 Ga0070689_100081988 3300005340 Bacteria 2532
14 Ga0070689_100114341 3300005340 Bacteria 2150
15 Ga0070668_100004994 3300005347 Bacteria 9825
16 Ga0070669_100003772 3300005353 Bacteria 10948
17 Ga0070675_100038553 3300005354 Bacteria 3895
18 Ga0070671_100119823 3300005355 Bacteria 2214
19 Ga0070674_100050593 3300005356 Bacteria 2861
20 Ga0070673_100001641 3300005364 Bacteria 13252
21 Ga0070673_100087359 3300005364 Bacteria 2541
22 Ga0070688_100001357 3300005365 Bacteria 12159
23 Ga0070667_100138797 3300005367 Unclassified 2127
24 Ga0070701_10000357 3300005438 Bacteria 15161
25 Ga0070700_100013780 3300005441 Bacteria 4548
26 Ga0070678_100141022 3300005456 Bacteria 1929
27 Ga0070662_100121027 3300005457 Bacteria 2006
28 Ga0068867_100030443 3300005459 Bacteria 3893
29 Ga0070685_10027757 3300005466 Bacteria 3132
30 Ga0070706_100068154 3300005467 Unclassified 3290
31 Ga0070706_100152417 3300005467 Bacteria 2158
32 Ga0068853_100248339 3300005539 Bacteria 1632
33 Ga0070672_100032137 3300005543 Bacteria 3958
34 Ga0070672_100063098 3300005543 Bacteria 2926
35 Ga0070686_100003099 3300005544 Bacteria 9113
36 Ga0070686_100007066 3300005544 Bacteria 6261
37 Ga0070704_100008384 3300005549 Bacteria 6195
38 Ga0068859_100017146 3300005617 Bacteria 7273
39 Ga0068859_100042333 3300005617 Bacteria 4574
40 Ga0068864_100310616 3300005618 Bacteria 1478
41 Ga0068866_10023512 3300005718 Bacteria 2868
42 Ga0068861_100137745 3300005719 Bacteria 1988
43 Ga0068863_100130454 3300005841 Unclassified 2400
44 Ga0068858_100152030 3300005842 Bacteria 2177
45 Ga0068858_100170432 3300005842 Bacteria 2053
46 Ga0068862_100082286 3300005844 Bacteria 2794
47 Ga0068862_100087871 3300005844 Bacteria 2703
48 Ga0070717_10018626 3300006028 Bacteria 5427
49 Ga0075428_100026788 3300006844 Bacteria 6384
50 Ga0075428_100030362 3300006844 Bacteria 5977
51 Ga0075428_100038439 3300006844 Bacteria 5266
52 Ga0075430_100030008 3300006846 Bacteria 4617
53 Ga0075433_10049427 3300006852 Bacteria 3659
54 Ga0075429_100008459 3300006880 Bacteria 8957
55 Ga0068865_100006336 3300006881 Bacteria 7210
56 Ga0068865_100078258 3300006881 Unclassified 2365
57 Ga0097620_100017147 3300006931 Bacteria 7273
58 Ga0097620_100042333 3300006931 Bacteria 4574
59 Ga0075435_100213977 3300007076 Bacteria 1636
60 Ga0105240_10019195 3300009093 Bacteria 9138
61 Ga0111539_10023341 3300009094 Bacteria 7599
62 Ga0111539_10128442 3300009094 Bacteria 2969
63 Ga0114129_10105315 3300009147 Bacteria 3898
64 Ga0105243_10183112 3300009148 Bacteria 1823
65 Ga0105237_10006313 3300009545 Bacteria 13174
66 Ga0105237_10009385 3300009545 Bacteria 10480
67 Ga0105238_10000058 3300009551 Bacteria 130734
68 Ga0157378_10096706 3300013297 Bacteria 2691
69 Ga0163162_10166229 3300013306 Bacteria 2330
70 Ga0157375_10000048 3300013308 Bacteria 140600
71 Ga0163163_10000082 3300014325 Bacteria 104633
72 Ga0157379_10049857 3300014968 Bacteria 3738
73 Ga0157376_10241448 3300014969 Bacteria 1683
74 Ga0207682_10016352 3300025893 Bacteria 2893
75 Ga0207642_10007798 3300025899 Bacteria 3633
76 Ga0207645_10006333 3300025907 Bacteria 8509
77 Ga0207645_10101283 3300025907 Bacteria 1858
78 Ga0207695_10052040 3300025913 Bacteria 4293
79 Ga0207671_10004472 3300025914 Bacteria 13345
80 Ga0207671_10032803 3300025914 Bacteria 3864
81 Ga0207662_10035169 3300025918 Bacteria 2925
82 Ga0207681_10001155 3300025923 Bacteria 17048
83 Ga0207694_10012042 3300025924 Bacteria 6521
84 Ga0207687_10002563 3300025927 Bacteria 12343
85 Ga0207706_10077954 3300025933 Bacteria 2914
86 Ga0207670_10000586 3300025936 Bacteria 20036
87 Ga0207670_10009876 3300025936 Bacteria 5467
88 Ga0207670_10035388 3300025936 Bacteria 3237
89 Ga0207670_10035909 3300025936 Bacteria 3219
90 Ga0207670_10040551 3300025936 Bacteria 3056
91 Ga0207704_10002962 3300025938 Bacteria 7669
92 Ga0207704_10151712 3300025938 Bacteria 1636
93 Ga0207691_10013021 3300025940 Bacteria 7964
94 Ga0207691_10078694 3300025940 Bacteria 2968
95 Ga0207661_10038657 3300025944 Bacteria 3742
96 Ga0207661_10088901 3300025944 Bacteria 2569
97 Ga0207677_10044761 3300026023 Bacteria 2951
98 Ga0207708_10021355 3300026075 Bacteria 4882
99 Ga0207702_10062920 3300026078 Bacteria 3171
100 Ga0207648_10041963 3300026089 Bacteria 4017
101 Ga0207675_100046263 3300026118 Bacteria 4065
102 Ga0207675_100124648 3300026118 Bacteria 2439
103 Ga0207683_10214901 3300026121 Bacteria 1751
104 Ga0265322_10019012 3300028654 Bacteria 1973
105 Ga0307517_10084851 3300028786 Bacteria 2660
106 Ga0265338_10000390 3300028800 Bacteria 78634
107 Ga0265338_10094271 3300028800 Unclassified 2463
108 Ga0307508_10021452 3300031616 Bacteria 5873
109 Ga0307409_100033136 3300031995 Bacteria 3756
110 Ga0307507_10065476 3300033179 Bacteria 3342
111 Ga0373931_0081593 3300035691 Bacteria 1786
112 Ga0316584_0000346 3300036712 Bacteria 23864
113 Ga0436360_0300846 3300039438 Unclassified 2508
114 Ga0453684_0000248 3300044712 Bacteria 232277
115 Ga0451576_0080974 3300045051 Bacteria 3378
116 Ga0451576_0093371 3300045051 Bacteria 3129
117 Ga0451576_0103367 3300045051 Bacteria 2964
118 Ga0451576_0245411 3300045051 Unclassified 1871
119 Ga0495645_0060801 3300046543 Bacteria 2738
120 Ga0495675_0055863 3300047444 Bacteria 2504
121 Ga0496104_0141072 3300048907 Unclassified 2315
122 Ga0496112_0148509 3300048915 Bacteria 2312
123 Ga0501034_0069696 3300049571 Bacteria 3527
124 Ga0501039_0149710 3300049575 Bacteria 1834
125 Ga0501047_0281320 3300049581 Bacteria 1508
126 Ga0501070_0119753 3300049586 Bacteria 2175
127 Ga0501073_0067433 3300049589 Bacteria 2495
128 Ga0501227_001009 3300049665 Bacteria 6236
129 nmdc:mga05p37_2930_c1 3300050507 Bacteria 18313
130 nmdc:mga09592_140301_c1 3300050508 Bacteria 2083
131 nmdc:mga09592_65976_c1 3300050508 Bacteria 3067
132 nmdc:mga09592_7310_c1 3300050508 Bacteria 8977
133 nmdc:mga08y16_135797_c1 3300050511 Bacteria 2556
134 nmdc:mga0n895_265309_c1 3300050512 Bacteria 1742
135 nmdc:mga0rr50_4656_c1 3300050513 Bacteria 8084
136 Ga0495601_0047192 3300053077 Bacteria 2711
137 Ga0501082_0030764 3300060353 Bacteria 4627

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006028 Ga0070717_10018626 Ga0070717_100186264 341
2 3300031995 Ga0307409_100033136 Ga0307409_1000331363 342
3 3300005290 Ga0065712_10069799 Ga0065712_100697992 346
4 3300028786 Ga0307517_10084851 Ga0307517_100848512 353
5 3300005467 Ga0070706_100068154 Ga0070706_1000681542 354
6 3300005328 Ga0070676_10007587 Ga0070676_100075872 389
7 3300005441 Ga0070700_100013780 Ga0070700_1000137801 389
8 3300005340 Ga0070689_100080519 Ga0070689_1000805192 390
9 3300025936 Ga0207670_10009876 Ga0207670_100098763 390
10 3300025918 Ga0207662_10035169 Ga0207662_100351692 394
11 3300005340 Ga0070689_100046454 Ga0070689_1000464543 395
12 3300005355 Ga0070671_100119823 Ga0070671_1001198232 395
13 3300005364 Ga0070673_100001641 Ga0070673_1000016412 395
14 3300005365 Ga0070688_100001357 Ga0070688_1000013572 395
15 3300005466 Ga0070685_10027757 Ga0070685_100277572 395
16 3300025936 Ga0207670_10040551 Ga0207670_100405513 395
17 3300045051 Ga0451576_0103367 Ga0451576_0103367_999_2351 397
18 3300036712 Ga0316584_0000346 Ga0316584_0000346_16725_18116 398
19 3300005844 Ga0068862_100087871 Ga0068862_1000878712 399
20 3300035691 Ga0373931_0081593 Ga0373931_0081593_309_1619 399
21 3300049581 Ga0501047_0281320 Ga0501047_0281320_33_1361 399
22 3300005330 Ga0070690_100052051 Ga0070690_1000520512 400
23 3300005335 Ga0070666_10037521 Ga0070666_100375212 400
24 3300005340 Ga0070689_100081988 Ga0070689_1000819882 400
25 3300005347 Ga0070668_100004994 Ga0070668_1000049947 400
26 3300005353 Ga0070669_100003772 Ga0070669_1000037721 400
27 3300005356 Ga0070674_100050593 Ga0070674_1000505932 400
28 3300005457 Ga0070662_100121027 Ga0070662_1001210272 400
29 3300005459 Ga0068867_100030443 Ga0068867_1000304432 400
30 3300005543 Ga0070672_100063098 Ga0070672_1000630982 400
31 3300005544 Ga0070686_100007066 Ga0070686_1000070664 400
32 3300005718 Ga0068866_10023512 Ga0068866_100235122 400
33 3300005719 Ga0068861_100137745 Ga0068861_1001377451 400
34 3300005842 Ga0068858_100170432 Ga0068858_1001704322 400
35 3300006881 Ga0068865_100006336 Ga0068865_1000063362 400
36 3300013297 Ga0157378_10096706 Ga0157378_100967061 400
37 3300025899 Ga0207642_10007798 Ga0207642_100077982 400
38 3300025907 Ga0207645_10006333 Ga0207645_100063334 400
39 3300025923 Ga0207681_10001155 Ga0207681_100011552 400
40 3300025933 Ga0207706_10077954 Ga0207706_100779542 400
41 3300025938 Ga0207704_10002962 Ga0207704_100029622 400
42 3300025940 Ga0207691_10078694 Ga0207691_100786942 400
43 3300026075 Ga0207708_10021355 Ga0207708_100213552 400
44 3300026089 Ga0207648_10041963 Ga0207648_100419633 400
45 3300026118 Ga0207675_100046263 Ga0207675_1000462632 400
46 3300049665 Ga0501227_001009 Ga0501227_001009_3480_4895 400
47 3300050508 nmdc:mga09592_65976_c1 nmdc:mga09592_65976_c1_243_1634 400
48 3300005329 Ga0070683_100033577 Ga0070683_1000335773 404
49 3300025944 Ga0207661_10038657 Ga0207661_100386573 404
50 3300005539 Ga0068853_100248339 Ga0068853_1002483392 405
51 3300050512 nmdc:mga0n895_265309_c1 nmdc:mga0n895_265309_c1_384_1673 405
52 3300006852 Ga0075433_10049427 Ga0075433_100494273 408
53 3300007076 Ga0075435_100213977 Ga0075435_1002139771 408
54 3300050513 nmdc:mga0rr50_4656_c1 nmdc:mga0rr50_4656_c1_316_1614 408
55 3300005340 Ga0070689_100114341 Ga0070689_1001143412 409
56 3300006844 Ga0075428_100030362 Ga0075428_1000303624 409
57 3300025936 Ga0207670_10035909 Ga0207670_100359092 409
58 3300048915 Ga0496112_0148509 Ga0496112_0148509_896_2212 409
59 3300005364 Ga0070673_100087359 Ga0070673_1000873592 410
60 3300005456 Ga0070678_100141022 Ga0070678_1001410221 410
61 3300026121 Ga0207683_10214901 Ga0207683_102149012 410
62 3300005618 Ga0068864_100310616 Ga0068864_1003106161 411
63 3300005328 Ga0070676_10123119 Ga0070676_101231191 412
64 3300005543 Ga0070672_100032137 Ga0070672_1000321373 412
65 3300025907 Ga0207645_10101283 Ga0207645_101012831 412
66 3300025940 Ga0207691_10013021 Ga0207691_100130214 412
67 3300025944 Ga0207661_10088901 Ga0207661_100889013 412
68 3300026078 Ga0207702_10062920 Ga0207702_100629203 412
69 3300014969 Ga0157376_10241448 Ga0157376_102414481 413
70 3300006844 Ga0075428_100038439 Ga0075428_1000384392 414
71 3300006880 Ga0075429_100008459 Ga0075429_10000845927 414
72 3300009147 Ga0114129_10105315 Ga0114129_101053152 414
73 3300050507 nmdc:mga05p37_2930_c1 nmdc:mga05p37_2930_c1_576_1925 414
74 3300050508 nmdc:mga09592_7310_c1 nmdc:mga09592_7310_c1_503_1852 414
75 3300013306 Ga0163162_10166229 Ga0163162_101662292 415
76 3300048907 Ga0496104_0141072 Ga0496104_0141072_266_1534 415
77 3300009545 Ga0105237_10009385 Ga0105237_100093858 416
78 3300014968 Ga0157379_10049857 Ga0157379_100498571 416
79 3300025914 Ga0207671_10032803 Ga0207671_100328033 416
80 3300045051 Ga0451576_0080974 Ga0451576_0080974_562_1890 416
81 3300005338 Ga0068868_100092552 Ga0068868_1000925522 417
82 3300005354 Ga0070675_100038553 Ga0070675_1000385534 417
83 3300005367 Ga0070667_100138797 Ga0070667_1001387972 417
84 3300005617 Ga0068859_100017146 Ga0068859_1000171462 417
85 3300005842 Ga0068858_100152030 Ga0068858_1001520302 417
86 3300006881 Ga0068865_100078258 Ga0068865_1000782583 417
87 3300006931 Ga0097620_100017147 Ga0097620_1000171472 417
88 3300009148 Ga0105243_10183112 Ga0105243_101831122 417
89 3300025927 Ga0207687_10002563 Ga0207687_100025634 417
90 3300026023 Ga0207677_10044761 Ga0207677_100447612 417
91 3300026118 Ga0207675_100124648 Ga0207675_1001246483 417
92 3300028800 Ga0265338_10000390 Ga0265338_1000039018 417
93 3300028800 Ga0265338_10094271 Ga0265338_100942712 417
94 3300009545 Ga0105237_10006313 Ga0105237_100063133 418
95 3300025914 Ga0207671_10004472 Ga0207671_1000447215 418
96 3300005844 Ga0068862_100082286 Ga0068862_1000822862 419
97 iso_pu_bacteria 2671180531 2673161269 419
98 3300039438 Ga0436360_0300846 Ga0436360_0300846_42_1322 420
99 3300006844 Ga0075428_100026788 Ga0075428_1000267885 421
100 3300049589 Ga0501073_0067433 Ga0501073_0067433_980_2410 421
101 3300060353 Ga0501082_0030764 Ga0501082_0030764_1811_3247 421
102 3300025936 Ga0207670_10035388 Ga0207670_100353882 422
103 3300044712 Ga0453684_0000248 Ga0453684_0000248_166568_167908 422
104 3300005340 Ga0070689_100011936 Ga0070689_1000119365 423
105 3300005617 Ga0068859_100042333 Ga0068859_1000423335 423
106 3300005841 Ga0068863_100130454 Ga0068863_1001304542 423
107 3300006931 Ga0097620_100042333 Ga0097620_1000423335 423
108 3300009094 Ga0111539_10128442 Ga0111539_101284422 423
109 3300014325 Ga0163163_10000082 Ga0163163_100000821 423
110 3300025936 Ga0207670_10000586 Ga0207670_100005864 423
111 3300049586 Ga0501070_0119753 Ga0501070_0119753_614_2065 423
112 3300050511 nmdc:mga08y16_135797_c1 nmdc:mga08y16_135797_c1_1170_2507 423
113 3300009093 Ga0105240_10019195 Ga0105240_100191959 424
114 3300009094 Ga0111539_10023341 Ga0111539_100233411 424
115 3300025913 Ga0207695_10052040 Ga0207695_100520402 424
116 3300046543 Ga0495645_0060801 Ga0495645_0060801_272_1630 424
117 3300005330 Ga0070690_100012319 Ga0070690_1000123193 425
118 3300005438 Ga0070701_10000357 Ga0070701_100003572 425
119 3300005544 Ga0070686_100003099 Ga0070686_1000030991 425
120 3300005549 Ga0070704_100008384 Ga0070704_1000083842 425
121 3300009551 Ga0105238_10000058 Ga0105238_1000005867 425
122 3300025924 Ga0207694_10012042 Ga0207694_100120422 425
123 3300045051 Ga0451576_0245411 Ga0451576_0245411_217_1527 425
124 3300049575 Ga0501039_0149710 Ga0501039_0149710_446_1762 425
125 3300025893 Ga0207682_10016352 Ga0207682_100163522 426
126 3300025938 Ga0207704_10151712 Ga0207704_101517121 426
127 3300006846 Ga0075430_100030008 Ga0075430_1000300082 427
128 3300013308 Ga0157375_10000048 Ga0157375_1000004866 427
129 3300031616 Ga0307508_10021452 Ga0307508_100214524 427
130 3300033179 Ga0307507_10065476 Ga0307507_100654763 427
131 3300047444 Ga0495675_0055863 Ga0495675_0055863_864_2210 427
132 3300050508 nmdc:mga09592_140301_c1 nmdc:mga09592_140301_c1_700_2043 427
133 3300053077 Ga0495601_0047192 Ga0495601_0047192_1267_2613 427
134 iso_pu_bacteria 2526164512 2526211095 427
135 3300028654 Ga0265322_10019012 Ga0265322_100190122 428
136 3300045051 Ga0451576_0093371 Ga0451576_0093371_427_1761 428
137 3300005467 Ga0070706_100152417 Ga0070706_1001524171 429
138 3300049571 Ga0501034_0069696 Ga0501034_0069696_1569_2921 429
139 3300003323 rootH1_10060269 rootH1_100602696 440

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14743

DNA_ligase_OB_2

DNA ligase OB-like domain

286

351

0.99

PF05406

WGR

WGR domain

412

483

0.95

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

102

272

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ra8-assembly1.cif.gz_A crystal structure of the q64v53_bacfr protein from bacteroides fragilis. northeast structural genomics consortium target bfr43 0.9534 374 438
6gdr-assembly1.cif.gz_A dna binding with a minimal scaffold: structure-function analysis of lig e dna ligases 0.8137 111 350
6ras-assembly1.cif.gz_I pmar-lig_pre. 0.7684 114 350
6rce-assembly1.cif.gz_I pmar-lig_pres3 0.7672 114 350
6gdr-assembly1.cif.gz_A dna binding with a minimal scaffold: structure-function analysis of lig e dna ligases 0.7666 111 350
ID Description Score Start End Superfamily
af_P33345_1_72_2.20.140.10 Mainly Beta;Single Sheet;q64v53_bacfr protein fold;WGR domain 0.9673 376 440 2.20.140.10
4d05B02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9564 125 222 3.30.470.30
af_P78271_1_70_2.20.140.10 Mainly Beta;Single Sheet;q64v53_bacfr protein fold;WGR domain 0.9458 374 439 2.20.140.10
4d05B02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;DNA ligase/mRNA capping enzyme 0.9374 125 222 3.30.470.30
af_A4I264_340_429_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.909 271 350 2.40.50.140
ID Description Score Start End GO Terms
AF-B9TF49-F1-model_v4 DNA ligase OB-like domain-containing protein 0.9804 270 351 GO:0006260
GO:0006281
GO:0016874
AF-A0A655QSD7-F1-model_v4 DNA ligase (EC 6.5.1.1) 0.9718 287 350 GO:0003910
GO:0006260
GO:0006281
AF-E1YLJ0-F1-model_v4 DNA ligase 0.9699 108 352 GO:0006260
GO:0006281
GO:0016874
AF-A0A4Y8CDJ8-F1-model_v4 DNA ligase 0.9588 287 352 GO:0006260
GO:0006281
GO:0016874
AF-A0A7S0QL15-F1-model_v4 SWIM-type domain-containing protein 0.957 2 65 GO:0008270

Feature Viewer

pLDDT pTM Quality
78.72 0.54 Medium
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Predicted Structure (AlphaFold2)

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