F176350

General Info

Members Datasets Scaffolds Average Seq Length
139 120 278 423

Family's Representative Sequence

Representative Sequence 3300013307|Ga0157372_10068525|Ga0157372_100685252
Length 469
Sequence MRNVRTDEGDGSPPRGELVRVLSWQGGRAARGSQRVRPSRARRLRWLAGALGLGLVAPLAACSSSGSGVPTLNWYINPDNGGQAKIAQQCTQASGGKYQVTTQLLPRDAASQREQLARRLAAHDSSIDLMSLDPVFVAEQAEAGFLAPVPDDVAKATTANIAQGAIDSATWRGKIVAIPFWSNTQLLWYRKSVAKAAGLDMTKPVTWDQLIEAAKKQSKYLAVQGIKAESLTVWINALIESAGGHIITNPEAPATDTKLGLDTPEGKAAATIMSTIGRSGVGGPGLPSEDEPASLTLFQGSKGSFMVNWPFVWTSTQTAVQSKALDKAVLEDIGWAEYPQTTQGKQARPPYGGINLGIGAFGKHTDLAFEAAQCIASPEHQAQYFISDGNPAASLKAYDDPKVQKAYPMYALIRKSLQDAAPRPKSPFYNQISTGLQQTWYPVSAIDPSTTPRTSSDFITAVLRGDRLL

Samples

Sample ID Description Type Environment
1 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
2 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
3 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
4 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
5 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
9 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
10 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
11 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
12 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
14 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
15 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
16 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
17 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
18 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
24 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
26 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
27 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
28 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
29 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
30 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
31 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
32 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
33 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
34 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
35 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
36 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
37 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
38 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
39 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
40 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
41 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
42 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
43 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
44 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
45 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
46 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
47 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
48 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
49 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
50 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
51 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
52 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
53 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
54 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
55 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
56 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
57 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
58 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
59 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
60 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
61 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
76 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
77 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
78 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
79 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
80 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
81 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
82 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
86 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
87 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
91 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
92 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
93 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
94 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
95 2643221613 Oerskovia sp. Root22 Isolate Unclassified
96 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
97 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
98 2643221721 Oerskovia sp. Root918 Isolate Unclassified
99 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
100 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
101 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
102 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
103 2739367653 Kocuria sp. OV113 Isolate Unclassified
104 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
105 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
106 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
107 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
108 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
109 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
110 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
111 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
112 2857727296 Kocuria sp. R-72562 Isolate Unclassified
113 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
114 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
115 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
116 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
117 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
118 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
119 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
120 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 78.42
Metatranscriptomes 1.44
Isolates 20.14

Biome Distribution

Category Percentage (%)
Aerial Root 0.72
Bulb 0
Endosphere 2.88
Nodule 0
Rhizoplane 5.76
Rhizosphere 74.82
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157372_10068525 3300013307 Bacteria 3989
2 Ga0070705_100021914 3300005440 Bacteria 3406
3 Ga0070665_100016379 3300005548 Bacteria 7434
4 Ga0070702_100000198 3300005615 Bacteria 19583
5 Ga0068860_100081360 3300005843 Bacteria 3080
6 Ga0081455_10027611 3300005937 Bacteria 5200
7 Ga0081538_10002840 3300005981 Bacteria 16561
8 Ga0081538_10009939 3300005981 Bacteria 7860
9 Ga0081539_10012120 3300005985 Bacteria 6697
10 Ga0081539_10032843 3300005985 Bacteria 3171
11 Ga0075364_10013037 3300006051 Bacteria 5100
12 Ga0075364_10039789 3300006051 Bacteria 3048
13 Ga0075430_100096392 3300006846 Bacteria 2472
14 Ga0075431_100232240 3300006847 Bacteria 1879
15 Ga0111539_10013686 3300009094 Bacteria 10135
16 Ga0105243_10034839 3300009148 Bacteria 3901
17 Ga0157370_10128394 3300013104 Bacteria 2366
18 Ga0157378_10021370 3300013297 Bacteria 5691
19 Ga0157375_10072780 3300013308 Bacteria 3454
20 Ga0197907_10050297 3300020069 Bacteria 1743
21 Ga0197907_10933185 3300020069 Bacteria 5324
22 Ga0207644_10006718 3300025931 Bacteria 7494
23 Ga0207686_10036876 3300025934 Bacteria 2947
24 Ga0207689_10020645 3300025942 Bacteria 5539
25 Ga0207678_10075592 3300026067 Bacteria 2885
26 Ga0207708_10184167 3300026075 Bacteria 1659
27 Ga0207428_10013868 3300027907 Bacteria 7020
28 Ga0268264_10020869 3300028381 Bacteria 5352
29 Ga0307513_10001838 3300031456 Bacteria 30130
30 Ga0307408_100064855 3300031548 Bacteria 2677
31 Ga0316576_10087467 3300031727 Bacteria 2319
32 Ga0316578_10072526 3300031728 Bacteria 2039
33 Ga0307405_10028604 3300031731 Bacteria 3249
34 Ga0307410_10033753 3300031852 Bacteria 3306
35 Ga0307410_10036374 3300031852 Bacteria 3206
36 Ga0307406_10176370 3300031901 Bacteria 1552
37 Ga0307407_10126988 3300031903 Bacteria 1626
38 Ga0307409_100153155 3300031995 Bacteria 2005
39 Ga0307416_100010140 3300032002 Bacteria 6210
40 Ga0307416_100106735 3300032002 Bacteria 2455
41 Ga0307416_100116365 3300032002 Bacteria 2370
42 Ga0316582_0193152 3300036647 Bacteria 1387
43 Ga0316584_0039301 3300036712 Bacteria 3522
44 Ga0395900_0128053 3300037418 Bacteria 2603
45 Ga0395898_0067918 3300037466 Bacteria 3451
46 Ga0395901_0196434 3300038443 Bacteria 2115
47 Ga0451791_1420592 3300041451 Bacteria 5853
48 Ga0439448_0018873 3300042005 Bacteria 2118
49 Ga0439455_0008535 3300042012 Bacteria 2199
50 Ga0439463_002440 3300042016 Bacteria 4737
51 Ga0450900_004742 3300042136 Bacteria 1576
52 Ga0439464_0002244 3300042439 Bacteria 4726
53 Ga0439460_0018035 3300042461 Bacteria 1897
54 Ga0439440_0004781 3300042993 Bacteria 2671
55 Ga0466966_0066366 3300044684 Bacteria 2268
56 Ga0466966_0101389 3300044684 Bacteria 1780
57 Ga0466961_0079927 3300044693 Bacteria 2070
58 Ga0466961_0096419 3300044693 Bacteria 1865
59 Ga0466960_0052149 3300044901 Bacteria 1978
60 Ga0466967_0000277 3300045976 Bacteria 22703
61 Ga0496107_0165094 3300048910 Bacteria 1642
62 Ga0496108_0000343 3300048911 Bacteria 39300
63 Ga0496108_0219540 3300048911 Bacteria 1652
64 Ga0496109_0133385 3300048912 Bacteria 2319
65 Ga0496110_0028582 3300048913 Bacteria 4791
66 Ga0496110_0142656 3300048913 Bacteria 2166
67 Ga0496111_0136276 3300048914 Bacteria 1818
68 Ga0496122_0000832 3300048925 Bacteria 58580
69 Ga0496123_0000673 3300048926 Bacteria 56422
70 Ga0496124_0000370 3300048927 Bacteria 82276
71 Ga0496124_0040409 3300048927 Bacteria 4034
72 Ga0496124_0066444 3300048927 Bacteria 3003
73 Ga0496125_0000913 3300048928 Bacteria 46575
74 Ga0501031_0008877 3300049568 Bacteria 6535
75 Ga0501032_0058051 3300049569 Bacteria 2598
76 Ga0501033_0044015 3300049570 Bacteria 3323
77 Ga0501034_0102505 3300049571 Bacteria 2855
78 Ga0501036_0097783 3300049572 Bacteria 2481
79 Ga0501037_0034407 3300049573 Bacteria 3739
80 Ga0501037_0068603 3300049573 Bacteria 2582
81 Ga0501038_0031992 3300049574 Bacteria 4645
82 Ga0501040_0001953 3300049576 Bacteria 13276
83 Ga0501041_0060121 3300049577 Bacteria 2326
84 Ga0501042_0044807 3300049578 Bacteria 3152
85 Ga0501043_0167217 3300049579 Bacteria 1717
86 Ga0501046_0019605 3300049580 Bacteria 5608
87 Ga0501046_0123194 3300049580 Bacteria 1971
88 Ga0501047_0032171 3300049581 Bacteria 5062
89 Ga0501048_0083070 3300049582 Bacteria 2259
90 Ga0501068_0138654 3300049584 Bacteria 1524
91 Ga0501070_0075262 3300049586 Bacteria 2795
92 Ga0501072_0044869 3300049588 Bacteria 3475
93 Ga0501075_0000483 3300049591 Bacteria 23766
94 Ga0501076_0002980 3300049592 Bacteria 11751
95 Ga0501079_0213266 3300049741 Bacteria 1508
96 Ga0501081_0047761 3300049743 Bacteria 2945
97 Ga0501083_0005217 3300049744 Bacteria 9194
98 Ga0501035_0013493 3300049822 Bacteria 7541
99 Ga0501044_0009532 3300049823 Bacteria 10573
100 Ga0501044_0033642 3300049823 Bacteria 5384
101 Ga0501045_0022322 3300049824 Bacteria 4530
102 nmdc:mga0yw44_152634_c1 3300050492 Bacteria 1507
103 nmdc:mga0yw44_44096_c1 3300050492 Bacteria 2666
104 nmdc:mga0qj67_104648_c1 3300050509 Bacteria 2283
105 nmdc:mga06r32_33943_c1 3300050510 Bacteria 4808
106 nmdc:mga08y16_22955_c1 3300050511 Bacteria 6587
107 Ga0501084_0035027 3300054114 Bacteria 4197
108 Ga0501084_0041466 3300054114 Bacteria 3851
109 Ga0501082_0009605 3300060353 Bacteria 8326
110 Ga0501082_0036642 3300060353 Bacteria 4225
111 Ga0530510_0002973 3300061734 Bacteria 11624
112 2515852851 2515154155 Bacteria 7985436
113 2537899785 2537561592 Bacteria 4348607
114 2644084698 2643221613 Bacteria 4622396
115 2644505074 2643221690 Bacteria 4654705
116 2644527400 2643221694 Bacteria 4392972
117 2644667310 2643221721 Bacteria 4486924
118 2644667535 2643221722 Bacteria 4247614
119 2676477766 2675903058 Bacteria 6822861
120 2676482231 2675903059 Bacteria 8644972
121 2729907090 2728369276 Bacteria 5610032
122 2739603203 2739367653 Bacteria 2780952
123 2784471505 2784132109 Bacteria 3141763
124 2817508266 2816332305 Bacteria 2697803
125 2827629089 2827628540 Bacteria 6858585
126 2837275121 2837268691 Bacteria 7850704
127 2839988162 2839986021 Bacteria 3685650
128 2857480965 2857479173 Bacteria 2469263
129 2857634501 2857632687 Bacteria 2448521
130 2857720927 2857720070 Bacteria 3189373
131 2857729173 2857727296 Bacteria 2745552
132 2870803272 2870801768 Bacteria 2710986
133 2870805314 2870804320 Bacteria 2552467
134 2884994392 2884994152 Bacteria 4492978
135 2928092728 2928090899 Bacteria 3158267
136 2932433823 2932431166 Bacteria 4215299
137 2935892513 2935890801 Bacteria 4593001
138 2974296279 2974294766 Bacteria 3767688
139 2984583723 2984580707 Bacteria 3351387
140 Ga0157372_10068525
141 Ga0070705_100021914
142 Ga0070665_100016379
143 Ga0070702_100000198
144 Ga0068860_100081360
145 Ga0081455_10027611
146 Ga0081538_10002840
147 Ga0081538_10009939
148 Ga0081539_10012120
149 Ga0081539_10032843
150 Ga0075364_10013037
151 Ga0075364_10039789
152 Ga0075430_100096392
153 Ga0075431_100232240
154 Ga0111539_10013686
155 Ga0105243_10034839
156 Ga0157370_10128394
157 Ga0157378_10021370
158 Ga0157375_10072780
159 Ga0197907_10050297
160 Ga0197907_10933185
161 Ga0207644_10006718
162 Ga0207686_10036876
163 Ga0207689_10020645
164 Ga0207678_10075592
165 Ga0207708_10184167
166 Ga0207428_10013868
167 Ga0268264_10020869
168 Ga0307513_10001838
169 Ga0307408_100064855
170 Ga0316576_10087467
171 Ga0316578_10072526
172 Ga0307405_10028604
173 Ga0307410_10033753
174 Ga0307410_10036374
175 Ga0307406_10176370
176 Ga0307407_10126988
177 Ga0307409_100153155
178 Ga0307416_100010140
179 Ga0307416_100106735
180 Ga0307416_100116365
181 Ga0316582_0193152
182 Ga0316584_0039301
183 Ga0395900_0128053
184 Ga0395898_0067918
185 Ga0395901_0196434
186 Ga0451791_1420592
187 Ga0439448_0018873
188 Ga0439455_0008535
189 Ga0439463_002440
190 Ga0450900_004742
191 Ga0439464_0002244
192 Ga0439460_0018035
193 Ga0439440_0004781
194 Ga0466966_0066366
195 Ga0466966_0101389
196 Ga0466961_0079927
197 Ga0466961_0096419
198 Ga0466960_0052149
199 Ga0466967_0000277
200 Ga0496107_0165094
201 Ga0496108_0000343
202 Ga0496108_0219540
203 Ga0496109_0133385
204 Ga0496110_0028582
205 Ga0496110_0142656
206 Ga0496111_0136276
207 Ga0496122_0000832
208 Ga0496123_0000673
209 Ga0496124_0000370
210 Ga0496124_0040409
211 Ga0496124_0066444
212 Ga0496125_0000913
213 Ga0501031_0008877
214 Ga0501032_0058051
215 Ga0501033_0044015
216 Ga0501034_0102505
217 Ga0501036_0097783
218 Ga0501037_0034407
219 Ga0501037_0068603
220 Ga0501038_0031992
221 Ga0501040_0001953
222 Ga0501041_0060121
223 Ga0501042_0044807
224 Ga0501043_0167217
225 Ga0501046_0019605
226 Ga0501046_0123194
227 Ga0501047_0032171
228 Ga0501048_0083070
229 Ga0501068_0138654
230 Ga0501070_0075262
231 Ga0501072_0044869
232 Ga0501075_0000483
233 Ga0501076_0002980
234 Ga0501079_0213266
235 Ga0501081_0047761
236 Ga0501083_0005217
237 Ga0501035_0013493
238 Ga0501044_0009532
239 Ga0501044_0033642
240 Ga0501045_0022322
241 nmdc:mga0yw44_152634_c1
242 nmdc:mga0yw44_44096_c1
243 nmdc:mga0qj67_104648_c1
244 nmdc:mga06r32_33943_c1
245 nmdc:mga08y16_22955_c1
246 Ga0501084_0035027
247 Ga0501084_0041466
248 Ga0501082_0009605
249 Ga0501082_0036642
250 Ga0530510_0002973
251 2515852851
252 2537899785
253 2644084698
254 2644505074
255 2644527400
256 2644667310
257 2644667535
258 2676477766
259 2676482231
260 2729907090
261 2739603203
262 2784471505
263 2817508266
264 2827629089
265 2837275121
266 2839988162
267 2857480965
268 2857634501
269 2857720927
270 2857729173
271 2870803272
272 2870805314
273 2884994392
274 2928092728
275 2932433823
276 2935892513
277 2974296279
278 2984583723

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01547

SBP_bac_1

Bacterial extracellular solute-binding protein

79

382

0.87

PF13416

SBP_bac_8

Bacterial extracellular solute-binding protein

85

410

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
7wcj-assembly1.cif.gz_A crystal structure lpqy from mycobacterium tuberculosis 0.8778 35 433
7cag-assembly1.cif.gz_E mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state 0.8724 38 436
7wda-assembly4.cif.gz_D crystal structure lpqy in complex with trehalose from mycobacterium tuberculosis 0.8682 35 433
7wda-assembly3.cif.gz_C crystal structure lpqy in complex with trehalose from mycobacterium tuberculosis 0.8658 35 433
1eu8-assembly1.cif.gz_A structure of trehalose maltose binding protein from thermococcus litoralis 0.8553 37 432
ID Description Score Start End Superfamily
af_P9WGU9_36_151_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8785 41 152 3.40.190.10
3k02A01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8659 37 392 3.40.190.10
1eu8A01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8622 37 386 3.40.190.10
5ysdB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8614 35 392 3.40.190.10
5ysdB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8572 35 392 3.40.190.10
ID Description Score Start End GO Terms
AF-Q0RJA4-F1-model_v4 Putative Sugar ABC transporter (Sugar-binding lipoprotein) (Maltodextrin-binding protein) 0.9325 56 436 GO:0015768
GO:0042956
GO:0055052
GO:1901982
AF-A0A0Q8PWB1-F1-model_v4 ABC transporter substrate-binding protein 0.9194 38 437
AF-A0A7K1L1M6-F1-model_v4 Extracellular solute-binding protein 0.9076 4 437
AF-Q0RJA4-F1-model_v4 Putative Sugar ABC transporter (Sugar-binding lipoprotein) (Maltodextrin-binding protein) 0.9066 56 436 GO:0015768
GO:0042956
GO:0055052
GO:1901982
AF-A0A7K1L1M6-F1-model_v4 Extracellular solute-binding protein 0.9056 4 437

Map