F176265

General Info

Members Datasets Scaffolds Average Seq Length
139 96 274 405

Family's Representative Sequence

Representative Sequence 3300010159|Ga0099796_10002921|Ga0099796_100029212
Length 463
Sequence MGNAAMLRDGLPPHRSARYQKRALPKTGQLDGGKCRVMADFADTTSAGIAASAPHRAASIEGRGSWIAAGVTLALLSVSYGSPLLVVVGLKPITEDLGTARQVVALAGALTWLGTGAGGILMGWVAERTSIRFTVIFGTVMIALGLTISASGNIWAILIGHTLFVGLLGNGALYPPLLVYISRWFDRRRGTALALISSGQYIAGMAWPILFERAMSDYGWRTTMIGWAVVMLVTIPPIAFLFLHRPPEVPTAFFRGGTAEERRIVLGLRPNTVLAIISIAGFCCCVPMAIPQGHLVAFCSDIGIPAAQGAAMLSVLQAAAFTSRMFWGWLSDRIGGLWTVLIGSVCQALAIAAFLTTQDEAGLFAVAAAYGLGFSGIIPAYVMAIRELFPAREASWRVPTVLFVSMGGMAFGSWFAGALYDHFGFYAPAFMTGVVFNLANLALIGFLVMRQRWDGGLRSQPAY

Samples

Sample ID Description Type Environment
1 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
28 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
40 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
41 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
42 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
43 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
44 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
45 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
46 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
47 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
50 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
51 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
54 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
55 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
56 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
57 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
58 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
59 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
60 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
61 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
62 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
63 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
64 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
65 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
66 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
67 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
68 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
69 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
70 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
71 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
72 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
73 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
74 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
75 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
76 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
77 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
83 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
84 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
85 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
86 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
87 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
88 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
89 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
90 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
91 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
92 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
93 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
94 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
95 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
96 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.12
Metatranscriptomes 0
Isolates 2.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.76
Nodule 0
Rhizoplane 2.88
Rhizosphere 82.73
Stem 0
Stem Tuber 0
Unclassified 2.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099796_10002921 3300010159 Bacteria 3860
2 Ga0070658_10201549 3300005327 Bacteria 1679
3 Ga0070680_100016711 3300005336 Bacteria 5776
4 Ga0070680_100219804 3300005336 Unclassified 1603
5 Ga0070689_100047287 3300005340 Bacteria 3318
6 Ga0070691_10063016 3300005341 Bacteria 1786
7 Ga0070671_100022358 3300005355 Bacteria 5164
8 Ga0070709_10038009 3300005434 Bacteria 2944
9 Ga0070714_100027404 3300005435 Bacteria 4719
10 Ga0070681_10023442 3300005458 Bacteria 6206
11 Ga0070681_10091145 3300005458 Bacteria 2999
12 Ga0070681_10118223 3300005458 Bacteria 2587
13 Ga0070681_10269556 3300005458 Bacteria 1614
14 Ga0070707_100002237 3300005468 Bacteria 18485
15 Ga0070698_100014856 3300005471 Bacteria 8231
16 Ga0070699_100006465 3300005518 Bacteria 10208
17 Ga0070679_100039006 3300005530 Bacteria 4722
18 Ga0070697_100019696 3300005536 Bacteria 5329
19 Ga0068855_100073951 3300005563 Bacteria 3958
20 Ga0070664_100094984 3300005564 Bacteria 2586
21 Ga0070664_100149325 3300005564 Bacteria 2063
22 Ga0068857_100002875 3300005577 Bacteria 14164
23 Ga0081455_10000479 3300005937 Bacteria 51768
24 Ga0081455_10003599 3300005937 Bacteria 17790
25 Ga0075367_10044993 3300006178 Bacteria 2589
26 Ga0105240_10024744 3300009093 Bacteria 7908
27 Ga0111539_10157997 3300009094 Bacteria 2653
28 Ga0105242_10204837 3300009176 Bacteria 1754
29 Ga0105246_10074800 3300011119 Bacteria 2396
30 Ga0157370_10038642 3300013104 Bacteria 4617
31 Ga0213872_10011508 3300021361 Bacteria 4185
32 Ga0213875_10000412 3300021388 Bacteria 37606
33 Ga0213875_10000759 3300021388 Bacteria 24322
34 Ga0213875_10001769 3300021388 Bacteria 13535
35 Ga0213875_10003001 3300021388 Bacteria 9813
36 Ga0213871_10000796 3300021441 Bacteria 4701
37 Ga0207705_10108978 3300025909 Bacteria 2044
38 Ga0207684_10032211 3300025910 Bacteria 4458
39 Ga0207707_10064902 3300025912 Bacteria 3179
40 Ga0207707_10073880 3300025912 Bacteria 2973
41 Ga0207652_10116404 3300025921 Bacteria 2374
42 Ga0207646_10016089 3300025922 Bacteria 7029
43 Ga0207670_10032125 3300025936 Bacteria 3373
44 Ga0207665_10022404 3300025939 Bacteria 4156
45 Ga0207679_10221191 3300025945 Bacteria 1593
46 Ga0207667_10117291 3300025949 Bacteria 2743
47 Ga0207702_10134985 3300026078 Bacteria 2225
48 Ga0207674_10037469 3300026116 Bacteria 5043
49 Ga0265316_10078261 3300031344 Bacteria 2539
50 Ga0373934_0035771 3300035086 Bacteria 1955
51 Ga0373953_0025704 3300035117 Bacteria 2251
52 Ga0373954_0110678 3300035118 Bacteria 1328
53 Ga0373957_0019030 3300035120 Bacteria 2411
54 Ga0373943_0096394 3300035170 Bacteria 1540
55 Ga0373955_0009279 3300035172 Bacteria 4606
56 Ga0373955_0047813 3300035172 Bacteria 2318
57 Ga0373924_0049270 3300035410 Bacteria 1743
58 Ga0373924_0055778 3300035410 Bacteria 1644
59 Ga0373933_0002750 3300035724 Bacteria 9822
60 Ga0373933_0005219 3300035724 Bacteria 7086
61 Ga0373933_0009008 3300035724 Bacteria 5445
62 Ga0373933_0129198 3300035724 Bacteria 1587
63 Ga0373937_0003466 3300036401 Bacteria 13252
64 Ga0373937_0030107 3300036401 Bacteria 4917
65 Ga0373937_0094040 3300036401 Bacteria 2779
66 Ga0373937_0219981 3300036401 Bacteria 1787
67 Ga0395899_0020639 3300037312 Bacteria 4994
68 Ga0395900_0010114 3300037418 Bacteria 9648
69 Ga0395900_0066769 3300037418 Bacteria 3696
70 Ga0436364_1149423 3300037853 Bacteria 148108
71 Ga0436364_1266540 3300037853 Bacteria 46477
72 Ga0436364_1329714 3300037853 Bacteria 45658
73 Ga0436364_1333083 3300037853 Bacteria 22141
74 Ga0395901_0002009 3300038443 Bacteria 20939
75 Ga0436365_1256485 3300039437 Bacteria 1918
76 Ga0436365_1667491 3300039437 Bacteria 2568
77 Ga0436360_0512397 3300039438 Bacteria 16910
78 Ga0436361_1167970 3300039447 Bacteria 5610
79 Ga0436362_0446250 3300039453 Bacteria 2791
80 Ga0495592_0067961 3300046454 Bacteria 2603
81 Ga0495592_0070733 3300046454 Bacteria 2541
82 Ga0495651_0045603 3300046462 Bacteria 3396
83 Ga0495653_0058747 3300046463 Bacteria 2923
84 Ga0495608_0041783 3300046511 Bacteria 3067
85 Ga0495652_0009161 3300046529 Bacteria 9000
86 Ga0495652_0070943 3300046529 Bacteria 2910
87 Ga0495652_0166973 3300046529 Bacteria 1702
88 Ga0495587_0005939 3300046536 Bacteria 7962
89 Ga0495587_0044618 3300046536 Bacteria 2636
90 Ga0495587_0132261 3300046536 Bacteria 1426
91 Ga0495667_0016263 3300046559 Bacteria 5025
92 Ga0495667_0042809 3300046559 Bacteria 3002
93 Ga0495667_0043231 3300046559 Bacteria 2986
94 Ga0495667_0162174 3300046559 Bacteria 1438
95 Ga0495634_0029184 3300046642 Bacteria 3820
96 Ga0495657_0074179 3300046675 Bacteria 2214
97 Ga0495657_0106243 3300046675 Bacteria 1782
98 Ga0495623_0034179 3300046679 Bacteria 3261
99 Ga0495600_0031450 3300046809 Bacteria 3439
100 Ga0495600_0100045 3300046809 Bacteria 1890
101 Ga0495604_0014462 3300047317 Bacteria 6294
102 Ga0495680_0026253 3300047322 Bacteria 4805
103 Ga0495680_0040283 3300047322 Bacteria 3723
104 Ga0495680_0081458 3300047322 Bacteria 2443
105 Ga0495675_0030970 3300047444 Bacteria 3414
106 Ga0495675_0100852 3300047444 Bacteria 1807
107 Ga0495684_0223850 3300047471 Bacteria 1378
108 Ga0495602_0035073 3300048088 Bacteria 4683
109 Ga0496104_0002490 3300048907 Bacteria 15862
110 Ga0496105_0085534 3300048908 Bacteria 2605
111 Ga0496108_0204881 3300048911 Unclassified 1712
112 Ga0496109_0210216 3300048912 Unclassified 1830
113 Ga0501034_0007375 3300049571 Bacteria 11713
114 Ga0501034_0007943 3300049571 Bacteria 11269
115 Ga0501034_0118177 3300049571 Bacteria 2639
116 Ga0501039_0093921 3300049575 Bacteria 2338
117 Ga0501043_0053119 3300049579 Bacteria 3182
118 Ga0501047_0115731 3300049581 Bacteria 2563
119 Ga0501044_0013786 3300049823 Bacteria 8735
120 nmdc:mga03683_2768_c1 3300050489 Bacteria 5509
121 nmdc:mga0k408_3479_c2 3300050493 Bacteria 7770
122 nmdc:mga06z11_104943_c1 3300050494 Bacteria 1556
123 Ga0495601_0000777 3300053077 Bacteria 17226
124 Ga0495601_0011237 3300053077 Bacteria 5348
125 Ga0495612_0004674 3300053078 Bacteria 5671
126 Ga0495595_0003685 3300053084 Bacteria 6092
127 Ga0495619_0047763 3300053085 Bacteria 2820
128 Ga0495619_0054944 3300053085 Bacteria 2636
129 Ga0495619_0079733 3300053085 Bacteria 2202
130 Ga0500568_0009311 3300053139 Bacteria 4676
131 Ga0500616_0001129 3300053153 Bacteria 27455
132 Ga0500609_004901 3300053731 Bacteria 1836
133 Ga0500552_000155 3300053733 Bacteria 5913
134 2883579291 2883577096 Bacteria 4709178
135 2894776443 2894772417 Bacteria 5305674
136 2929204578 2929199973 Bacteria 7260745
137 8055914554 8055909800 Bacteria 7278581
138 Ga0099796_10002921
139 Ga0070658_10201549
140 Ga0070680_100016711
141 Ga0070680_100219804
142 Ga0070689_100047287
143 Ga0070691_10063016
144 Ga0070671_100022358
145 Ga0070709_10038009
146 Ga0070714_100027404
147 Ga0070681_10023442
148 Ga0070681_10091145
149 Ga0070681_10118223
150 Ga0070681_10269556
151 Ga0070707_100002237
152 Ga0070698_100014856
153 Ga0070699_100006465
154 Ga0070679_100039006
155 Ga0070697_100019696
156 Ga0068855_100073951
157 Ga0070664_100094984
158 Ga0070664_100149325
159 Ga0068857_100002875
160 Ga0081455_10000479
161 Ga0081455_10003599
162 Ga0075367_10044993
163 Ga0105240_10024744
164 Ga0111539_10157997
165 Ga0105242_10204837
166 Ga0105246_10074800
167 Ga0157370_10038642
168 Ga0213872_10011508
169 Ga0213875_10000412
170 Ga0213875_10000759
171 Ga0213875_10001769
172 Ga0213875_10003001
173 Ga0213871_10000796
174 Ga0207705_10108978
175 Ga0207684_10032211
176 Ga0207707_10064902
177 Ga0207707_10073880
178 Ga0207652_10116404
179 Ga0207646_10016089
180 Ga0207670_10032125
181 Ga0207665_10022404
182 Ga0207679_10221191
183 Ga0207667_10117291
184 Ga0207702_10134985
185 Ga0207674_10037469
186 Ga0265316_10078261
187 Ga0373934_0035771
188 Ga0373953_0025704
189 Ga0373954_0110678
190 Ga0373957_0019030
191 Ga0373943_0096394
192 Ga0373955_0009279
193 Ga0373955_0047813
194 Ga0373924_0049270
195 Ga0373924_0055778
196 Ga0373933_0002750
197 Ga0373933_0005219
198 Ga0373933_0009008
199 Ga0373933_0129198
200 Ga0373937_0003466
201 Ga0373937_0030107
202 Ga0373937_0094040
203 Ga0373937_0219981
204 Ga0395899_0020639
205 Ga0395900_0010114
206 Ga0395900_0066769
207 Ga0436364_1149423
208 Ga0436364_1266540
209 Ga0436364_1329714
210 Ga0436364_1333083
211 Ga0395901_0002009
212 Ga0436365_1256485
213 Ga0436365_1667491
214 Ga0436360_0512397
215 Ga0436361_1167970
216 Ga0436362_0446250
217 Ga0495592_0067961
218 Ga0495592_0070733
219 Ga0495651_0045603
220 Ga0495653_0058747
221 Ga0495608_0041783
222 Ga0495652_0009161
223 Ga0495652_0070943
224 Ga0495652_0166973
225 Ga0495587_0005939
226 Ga0495587_0044618
227 Ga0495587_0132261
228 Ga0495667_0016263
229 Ga0495667_0042809
230 Ga0495667_0043231
231 Ga0495667_0162174
232 Ga0495634_0029184
233 Ga0495657_0074179
234 Ga0495657_0106243
235 Ga0495623_0034179
236 Ga0495600_0031450
237 Ga0495600_0100045
238 Ga0495604_0014462
239 Ga0495680_0026253
240 Ga0495680_0040283
241 Ga0495680_0081458
242 Ga0495675_0030970
243 Ga0495675_0100852
244 Ga0495684_0223850
245 Ga0495602_0035073
246 Ga0496104_0002490
247 Ga0496105_0085534
248 Ga0496108_0204881
249 Ga0496109_0210216
250 Ga0501034_0007375
251 Ga0501034_0007943
252 Ga0501034_0118177
253 Ga0501039_0093921
254 Ga0501043_0053119
255 Ga0501047_0115731
256 Ga0501044_0013786
257 nmdc:mga03683_2768_c1
258 nmdc:mga0k408_3479_c2
259 nmdc:mga06z11_104943_c1
260 Ga0495601_0000777
261 Ga0495601_0011237
262 Ga0495612_0004674
263 Ga0495595_0003685
264 Ga0495619_0047763
265 Ga0495619_0054944
266 Ga0495619_0079733
267 Ga0500568_0009311
268 Ga0500616_0001129
269 Ga0500609_004901
270 Ga0500552_000155
271 2883579291
272 2894776443
273 2929204578
274 8055914554

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

277

461

0.84

PF07690

MFS_1

Major Facilitator Superfamily

67

323

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hpk-assembly1.cif.gz_A crystal structure of the bacterial oxalate transporter oxlt in an oxalate-bound occluded form 0.8712 20 391
7yr5-assembly1.cif.gz_A embigin facilitates monocarboxylate transporter 1 localization to plasma membrane and transition to a decoupling state 0.8657 21 401
6e9n-assembly2.cif.gz_B e. coli d-galactonate:proton symporter in the inward open form 0.8495 18 388
7yr5-assembly1.cif.gz_A embigin facilitates monocarboxylate transporter 1 localization to plasma membrane and transition to a decoupling state 0.8446 21 401
7da5-assembly1.cif.gz_A cryo-em structure of the human mct1 d309n mutant in complex with basigin-2 in the inward-open conformation. 0.8401 17 402
ID Description Score Start End Superfamily
af_Q7JWI7_52_243_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9366 17 199 1.20.1250.20
af_F1QFN0_14_227_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9325 20 199 1.20.1250.20
af_A0A1D8PNK9_184_377_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9197 20 199 1.20.1250.20
af_A0A0R4IK09_14_317_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9189 20 199 1.20.1250.20
af_Q7TM99_11_268_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9186 20 201 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A6V8P0B8-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9129 49 201 GO:0016020
GO:0022857
AF-A0A160PPB4-F1-model_v4 Arabinose efflux permease family protein 0.8893 17 384 GO:0016020
GO:0022857
AF-A0A2E5KP56-F1-model_v4 MFS transporter 0.8818 19 405 GO:0016020
GO:0022857
AF-A0A7V2KUQ2-F1-model_v4 MFS transporter 0.8811 19 384 GO:0016020
GO:0022857
AF-A0A4P9Y4K5-F1-model_v4 Major facilitator superfamily domain-containing protein 0.881 16 392 GO:0016020
GO:0022857

Map