F175027

General Info

Members Datasets Scaffolds Average Seq Length
139 108 107 346

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10242593|rootH1_102425932
Length 415
Sequence MQHKGRDNTKPLSRFYTKWFTFYTKVFRGNIWYTKEGISYIFRRHGVESLYLCTGFNSCISIMKHKHDERIIRLIIDDRYRLLRHAMVVLGILTMISFTNEIQGSREDRYFRLLCVSVFLILMCYVNMNVLVPRFFFKGSYILYLALLLILVVAGRMVMSRVLRRFDVAAHLDTMQNSKDKLGIYEGTIILIAVVLVTTMVKLFQRWMRDNERMAELRNLTLTMELNELRNQINPHFLFNMLNGIKALIRKDPEKANLVIMKLSEFLRYQLYENNNERTLLRSEINFLSNFLALEKLRRDHLSINISSETPPRIINWVSLPPNLFTTFLENAVKHSVDISGAESYINVGIEVKEDKLYFSCTNSKDPEFRPSDKRNSGLGLANIKRRLELLYGDRYRLDVSSTEREHNITLTIPL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
3 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
4 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
5 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
6 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
7 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
8 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
9 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
10 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
11 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
12 2738541278 Niastella sp. CF465 Isolate Unclassified
13 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
14 2738541283 Pedobacter sp. OK701 Isolate Unclassified
15 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
16 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
17 2738543023 Pedobacter sp. OK628 Isolate Unclassified
18 2739367663 Pedobacter sp. YR510 Isolate Unclassified
19 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
20 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
21 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
22 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
23 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
24 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
25 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
26 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
27 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
28 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
29 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
30 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
31 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
32 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
33 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
34 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
35 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
36 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
37 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
38 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
39 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
40 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
41 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
42 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
64 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
65 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
66 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
70 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
71 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
72 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
73 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
74 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
75 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
78 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
79 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
80 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
81 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
82 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
83 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
84 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
85 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
88 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
89 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
100 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
101 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
102 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
103 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
105 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
106 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
107 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
108 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.42
Metatranscriptomes 0
Isolates 21.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.99
Nodule 0.72
Rhizoplane 0
Rhizosphere 51.8
Stem 0
Stem Tuber 0
Unclassified 29.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1034238 2162886007 Bacteria 3132
2 SwRhRL2b_contig_3874380 2162886007 Bacteria 3482
3 JGI24740J21852_10004028 3300001979 Bacteria 6362
4 JGI24739J22299_10001703 3300001989 Bacteria 8358
5 JGI25154J39366_1000008 3300002738 Bacteria 315375
6 JGI25153J46596_10000655 3300003215 Bacteria 21176
7 rootH2_10020670 3300003320 Bacteria 3036
8 rootL2_10001837 3300003322 Bacteria 22242
9 rootL2_10012409 3300003322 Bacteria 4520
10 rootL2_10180888 3300003322 Bacteria 3283
11 rootH1_10040472 3300003323 Bacteria 6907
12 rootH1_10242593 3300003323 Bacteria 1934
13 JGI25160J50197_1010084 3300003354 Bacteria 3447
14 Ga0055534_1007027 3300003784 Bacteria 2746
15 Ga0055528_1013378 3300003790 Bacteria 3109
16 Ga0065165_1000112 3300005262 Bacteria 135988
17 Ga0065165_1034367 3300005262 Unclassified 1568
18 Ga0065714_10005617 3300005288 Bacteria 6980
19 Ga0065704_10000223 3300005289 Bacteria 110188
20 Ga0065704_10070907 3300005289 Bacteria 14796
21 Ga0070668_100121496 3300005347 Bacteria 2088
22 Ga0105237_10011788 3300009545 Bacteria 9250
23 Ga0105239_10338860 3300010375 Bacteria 1697
24 Ga0157373_10002432 3300013100 Bacteria 14174
25 Ga0157371_10010965 3300013102 Bacteria 7024
26 Ga0157371_10139091 3300013102 Bacteria 1730
27 Ga0157370_10003512 3300013104 Bacteria 18379
28 Ga0157370_10005114 3300013104 Bacteria 14793
29 Ga0157370_10042419 3300013104 Bacteria 4385
30 Ga0157370_10109449 3300013104 Bacteria 2583
31 Ga0157370_10113586 3300013104 Bacteria 2531
32 Ga0157370_10546630 3300013104 Bacteria 1062
33 Ga0157369_10000005 3300013105 Bacteria 470816
34 Ga0157374_10000007 3300013296 Bacteria 595643
35 Ga0163162_10051670 3300013306 Unclassified 4124
36 Ga0182006_1003630 3300015261 Bacteria 7839
37 Ga0163161_10032893 3300017792 Bacteria 3704
38 Ga0209646_1000045 3300025246 Bacteria 333765
39 Ga0209646_1001450 3300025246 Bacteria 6337
40 Ga0209026_1000075 3300025250 Bacteria 202874
41 Ga0209673_1000096 3300025273 Bacteria 194819
42 Ga0209673_1021260 3300025273 Bacteria 2274
43 Ga0209675_1000088 3300025291 Bacteria 147320
44 Ga0209564_1007016 3300025295 Bacteria 5908
45 Ga0209758_1000926 3300025297 Bacteria 39667
46 Ga0209758_1001132 3300025297 Bacteria 34267
47 Ga0209758_1002730 3300025297 Bacteria 17379
48 Ga0207426_1000159 3300025302 Bacteria 175899
49 Ga0207426_1000699 3300025302 Bacteria 39800
50 Ga0209051_1029226 3300025303 Bacteria 2161
51 Ga0207668_10056156 3300025972 Bacteria 2741
52 Ga0307515_10000001 3300028794 Bacteria 4259510
53 Ga0316176_1207301 3300030732 Bacteria 4143
54 Ga0316183_1106139 3300030742 Bacteria 8986
55 Ga0316181_1016191 3300030744 Bacteria 12753
56 Ga0316181_1045288 3300030744 Bacteria 1640
57 Ga0307509_10080365 3300031507 Bacteria 3372
58 Ga0307412_10000017 3300031911 Bacteria 294698
59 Ga0307414_10000586 3300032004 Bacteria 18882
60 Ga0307414_10009687 3300032004 Bacteria 5549
61 Ga0307510_10187760 3300033180 Bacteria 1619
62 Ga0373939_0052500 3300035114 Bacteria 1271
63 Ga0373927_0222146 3300035695 Bacteria 1241
64 Ga0439431_0016130 3300041997 Bacteria 1745
65 Ga0466968_0153678 3300044735 Bacteria 1059
66 Ga0495627_000002 3300046453 Bacteria 903861
67 Ga0495590_0008793 3300046457 Bacteria 3840
68 Ga0495638_0062011 3300046460 Bacteria 2309
69 Ga0495585_0006132 3300046492 Bacteria 7502
70 Ga0495596_0012930 3300046500 Bacteria 3557
71 Ga0495583_0107441 3300046506 Bacteria 1185
72 Ga0495610_0000009 3300046512 Bacteria 554843
73 Ga0495610_0026172 3300046512 Bacteria 3118
74 Ga0495632_0002641 3300046519 Bacteria 13481
75 Ga0495648_0001876 3300046524 Bacteria 20086
76 Ga0495652_0109778 3300046529 Bacteria 2220
77 Ga0495654_0000001 3300046530 Bacteria 1513197
78 Ga0495633_0000002 3300046558 Bacteria 488754
79 Ga0495633_0018100 3300046558 Bacteria 3583
80 Ga0495625_0005092 3300046660 Bacteria 12162
81 Ga0495625_0276554 3300046660 Bacteria 1081
82 Ga0495649_0000003 3300046694 Bacteria 880817
83 Ga0495687_003675 3300047443 Bacteria 10921
84 Ga0495614_0018724 3300048089 Bacteria 2999
85 Ga0496117_0000074 3300048920 Bacteria 232732
86 Ga0496118_0002167 3300048921 Bacteria 27343
87 Ga0496119_0000017 3300048922 Bacteria 309779
88 Ga0496120_0042797 3300048923 Bacteria 2643
89 Ga0496122_0000354 3300048925 Bacteria 98798
90 Ga0496122_0000357 3300048925 Bacteria 98456
91 Ga0496122_0003747 3300048925 Bacteria 19611
92 Ga0496122_0021885 3300048925 Bacteria 5703
93 Ga0496123_0005800 3300048926 Bacteria 12262
94 Ga0496123_0007828 3300048926 Bacteria 9948
95 Ga0496124_0001335 3300048927 Bacteria 37051
96 Ga0496125_0000156 3300048928 Bacteria 151400
97 Ga0496126_0002108 3300048929 Bacteria 27861
98 Ga0501241_015092 3300049758 Bacteria 1404
99 Ga0500646_0013100 3300053090 Bacteria 2146
100 Ga0500583_0000036 3300053092 Bacteria 95404
101 Ga0500583_0000666 3300053092 Bacteria 10123
102 Ga0500651_0000048 3300053093 Bacteria 83662
103 Ga0500651_0007401 3300053093 Bacteria 6410
104 Ga0500641_0000102 3300053096 Bacteria 33019
105 Ga0500622_0016077 3300053156 Bacteria 4002
106 Ga0500624_000189 3300053157 Bacteria 24348
107 Ga0500584_024422 3300053726 Bacteria 2811

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046453 Ga0495627_000002 Ga0495627_000002_200228_201085 285
2 3300044735 Ga0466968_0153678 Ga0466968_0153678_30_896 288
3 3300046530 Ga0495654_0000001 Ga0495654_0000001_1236660_1237529 289
4 3300013104 Ga0157370_10546630 Ga0157370_105466302 293
5 3300048928 Ga0496125_0000156 Ga0496125_0000156_30640_31521 293
6 3300046558 Ga0495633_0000002 Ga0495633_0000002_180967_181851 294
7 3300046660 Ga0495625_0276554 Ga0495625_0276554_20_934 304
8 3300046512 Ga0495610_0000009 Ga0495610_0000009_84985_86061 306
9 3300013104 Ga0157370_10003512 Ga0157370_100035124 308
10 3300013105 Ga0157369_10000005 Ga0157369_1000000591 308
11 3300048920 Ga0496117_0000074 Ga0496117_0000074_98267_99343 322
12 3300048921 Ga0496118_0002167 Ga0496118_0002167_14528_15604 322
13 3300048922 Ga0496119_0000017 Ga0496119_0000017_133307_134383 322
14 3300048923 Ga0496120_0042797 Ga0496120_0042797_343_1419 322
15 3300048925 Ga0496122_0000354 Ga0496122_0000354_20382_21458 322
16 3300048926 Ga0496123_0005800 Ga0496123_0005800_2592_3668 322
17 3300048927 Ga0496124_0001335 Ga0496124_0001335_16692_17768 322
18 3300010375 Ga0105239_10338860 Ga0105239_103388602 325
19 3300013104 Ga0157370_10042419 Ga0157370_100424192 325
20 3300005347 Ga0070668_100121496 Ga0070668_1001214963 327
21 3300025972 Ga0207668_10056156 Ga0207668_100561562 327
22 3300046506 Ga0495583_0107441 Ga0495583_0107441_44_1126 328
23 3300013306 Ga0163162_10051670 Ga0163162_100516705 334
24 3300046460 Ga0495638_0062011 Ga0495638_0062011_435_1511 334
25 3300053090 Ga0500646_0013100 Ga0500646_0013100_466_1542 334
26 3300053092 Ga0500583_0000666 Ga0500583_0000666_5945_7021 334
27 3300003322 rootL2_10180888 rootL2_101808882 336
28 3300002738 JGI25154J39366_1000008 JGI25154J39366_1000008104 338
29 3300025246 Ga0209646_1000045 Ga0209646_1000045106 338
30 3300025250 Ga0209026_1000075 Ga0209026_1000075126 338
31 3300025273 Ga0209673_1021260 Ga0209673_10212602 338
32 3300025295 Ga0209564_1007016 Ga0209564_10070166 338
33 3300025297 Ga0209758_1001132 Ga0209758_100113214 338
34 3300046512 Ga0495610_0026172 Ga0495610_0026172_1144_2241 339
35 3300048929 Ga0496126_0002108 Ga0496126_0002108_15744_16820 339
36 3300041997 Ga0439431_0016130 Ga0439431_0016130_28_1053 341
37 iso_pu_bacteria 2772190705 2772604868 341
38 3300001989 JGI24739J22299_10001703 JGI24739J22299_100017037 342
39 3300003322 rootL2_10001837 rootL2_1000183711 342
40 3300003790 Ga0055528_1013378 Ga0055528_10133783 342
41 3300005262 Ga0065165_1000112 Ga0065165_100011239 342
42 3300013102 Ga0157371_10139091 Ga0157371_101390912 342
43 3300025273 Ga0209673_1000096 Ga0209673_100009675 342
44 3300025297 Ga0209758_1002730 Ga0209758_100273012 342
45 3300025302 Ga0207426_1000699 Ga0207426_100069928 342
46 3300025303 Ga0209051_1029226 Ga0209051_10292263 342
47 3300030732 Ga0316176_1207301 Ga0316176_12073013 343
48 3300030742 Ga0316183_1106139 Ga0316183_11061396 343
49 3300030744 Ga0316181_1016191 Ga0316181_101619110 343
50 3300046500 Ga0495596_0012930 Ga0495596_0012930_2017_3093 343
51 3300009545 Ga0105237_10011788 Ga0105237_100117883 344
52 3300013104 Ga0157370_10005114 Ga0157370_1000511411 344
53 3300015261 Ga0182006_1003630 Ga0182006_10036303 344
54 3300017792 Ga0163161_10032893 Ga0163161_100328933 344
55 3300048925 Ga0496122_0003747 Ga0496122_0003747_951_2075 344
56 3300048926 Ga0496123_0007828 Ga0496123_0007828_2430_3554 344
57 3300031507 Ga0307509_10080365 Ga0307509_100803652 345
58 3300053726 Ga0500584_024422 Ga0500584_024422_524_1603 345
59 3300013102 Ga0157371_10010965 Ga0157371_100109658 347
60 3300049758 Ga0501241_015092 Ga0501241_015092_294_1370 347
61 3300053093 Ga0500651_0007401 Ga0500651_0007401_1363_2439 347
62 3300053096 Ga0500641_0000102 Ga0500641_0000102_3282_4361 347
63 3300053157 Ga0500624_000189 Ga0500624_000189_12957_14033 347
64 3300003215 JGI25153J46596_10000655 JGI25153J46596_100006555 348
65 3300003320 rootH2_10020670 rootH2_100206701 348
66 3300003323 rootH1_10040472 rootH1_100404725 348
67 3300003354 JGI25160J50197_1010084 JGI25160J50197_10100844 348
68 3300003784 Ga0055534_1007027 Ga0055534_10070272 348
69 3300005262 Ga0065165_1034367 Ga0065165_10343672 348
70 3300025291 Ga0209675_1000088 Ga0209675_1000088118 348
71 3300025297 Ga0209758_1000926 Ga0209758_100092627 348
72 3300025302 Ga0207426_1000159 Ga0207426_100015934 348
73 3300053092 Ga0500583_0000036 Ga0500583_0000036_86590_87669 348
74 3300046457 Ga0495590_0008793 Ga0495590_0008793_182_1300 349
75 iso_pu_bacteria 2842903701 2842904589 349
76 iso_pu_bacteria 2738543023 2739304557 350
77 3300013100 Ga0157373_10002432 Ga0157373_100024329 351
78 3300033180 Ga0307510_10187760 Ga0307510_101877602 351
79 iso_pu_bacteria 2738541278 2738730163 351
80 iso_pu_bacteria 2738541283 2738755180 351
81 2162886007 SwRhRL2b_contig_3874380 SwRhRL2b_0689.00006710 352
82 3300003322 rootL2_10012409 rootL2_100124092 352
83 3300003323 rootH1_10242593 rootH1_102425932 352
84 3300005289 Ga0065704_10070907 Ga0065704_100709073 352
85 3300025246 Ga0209646_1001450 Ga0209646_10014504 352
86 iso_pu_bacteria 2585428115 2587943292 352
87 3300047443 Ga0495687_003675 Ga0495687_003675_603_1682 353
88 3300035114 Ga0373939_0052500 Ga0373939_0052500_180_1250 354
89 3300035695 Ga0373927_0222146 Ga0373927_0222146_156_1223 354
90 iso_pu_bacteria 2582581278 2585145332 354
91 iso_pu_bacteria 2585428060 2587746776 354
92 iso_pu_bacteria 2585428115 2587943499 354
93 iso_pu_bacteria 2585428182 2588209542 354
94 iso_pu_bacteria 2585428183 2588213827 354
95 iso_pu_bacteria 2585428184 2588218555 354
96 iso_pu_bacteria 2585428185 2588225762 354
97 iso_pu_bacteria 2588253712 2588444994 354
98 iso_pu_bacteria 2588254257 2590612428 354
99 iso_pu_bacteria 2728369107 2729199147 354
100 iso_pu_bacteria 2739367663 2739644553 354
101 iso_pu_bacteria 2765235839 2765573241 354
102 iso_pu_bacteria 2816332188 2816873650 354
103 iso_pu_bacteria 2871720351 2871720800 354
104 iso_pu_bacteria 2889290771 2889291083 354
105 iso_pu_bacteria 2919399522 2919400520 354
106 iso_pu_bacteria 2946019816 2946021898 354
107 iso_pu_bacteria 2738541279 2738734557 355
108 iso_pu_bacteria 2738541285 2738767316 355
109 iso_pu_bacteria 2738543007 2739216139 355
110 iso_pu_bacteria 2929177148 2929182110 355
111 iso_pu_bacteria 2929921140 2929924029 355
112 iso_pu_bacteria 8003151029 8003157848 355
113 iso_pu_bacteria 8036736890 8036739307 355
114 3300013104 Ga0157370_10109449 Ga0157370_101094491 357
115 3300013296 Ga0157374_10000007 Ga0157374_10000007341 357
116 3300046453 Ga0495627_000002 Ga0495627_000002_141874_142959 357
117 3300046492 Ga0495585_0006132 Ga0495585_0006132_1336_2412 357
118 3300046519 Ga0495632_0002641 Ga0495632_0002641_1034_2113 357
119 3300046524 Ga0495648_0001876 Ga0495648_0001876_17000_18076 357
120 3300046529 Ga0495652_0109778 Ga0495652_0109778_683_1759 357
121 3300046530 Ga0495654_0000001 Ga0495654_0000001_1179581_1180699 357
122 3300046558 Ga0495633_0018100 Ga0495633_0018100_1436_2512 357
123 3300046660 Ga0495625_0005092 Ga0495625_0005092_1364_2440 357
124 3300046694 Ga0495649_0000003 Ga0495649_0000003_438800_439876 357
125 3300048089 Ga0495614_0018724 Ga0495614_0018724_1909_2985 357
126 3300048925 Ga0496122_0000357 Ga0496122_0000357_87454_88530 357
127 3300048925 Ga0496122_0021885 Ga0496122_0021885_1660_2736 357
128 3300053156 Ga0500622_0016077 Ga0500622_0016077_233_1309 357
129 2162886007 SwRhRL2b_contig_1034238 SwRhRL2b_0231.00002620 358
130 3300001979 JGI24740J21852_10004028 JGI24740J21852_100040288 358
131 3300005288 Ga0065714_10005617 Ga0065714_100056172 358
132 3300005289 Ga0065704_10000223 Ga0065704_100002238 358
133 3300013104 Ga0157370_10113586 Ga0157370_101135862 358
134 3300028794 Ga0307515_10000001 Ga0307515_10000001759 358
135 3300030744 Ga0316181_1045288 Ga0316181_10452881 358
136 3300031911 Ga0307412_10000017 Ga0307412_1000001770 358
137 3300032004 Ga0307414_10000586 Ga0307414_100005862 358
138 3300032004 Ga0307414_10009687 Ga0307414_100096872 358
139 3300053093 Ga0500651_0000048 Ga0500651_0000048_17270_18346 358

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06580

His_kinase

Histidine kinase

224

302

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
8h70-assembly1.cif.gz_A crystal structure of the catalytic atp-binding domain of the phor sensor histidine kinase from vibrio cholera 0.7582 219 357
8dwz-assembly1.cif.gz_A ca domain of vansa histidine kinase, 7 kev data 0.7468 221 357
8dwz-assembly1.cif.gz_A ca domain of vansa histidine kinase, 7 kev data 0.7271 221 357
8h70-assembly1.cif.gz_A crystal structure of the catalytic atp-binding domain of the phor sensor histidine kinase from vibrio cholera 0.715 219 357
6qbx-assembly1.cif.gz_a2 ovine respiratory supercomplex i+iii2 closed class. 0.7093 332 357
ID Description Score Start End Superfamily
af_P0AD14_423_557_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8235 222 358 3.30.565.10
af_P0AD14_423_557_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8128 222 358 3.30.565.10
af_Q2G1E0_342_515_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8025 196 358 3.30.565.10
af_Q53705_433_584_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.7586 222 357 3.30.565.10
af_Q2G1E0_342_515_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.7514 196 358 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A2W6V2W6-F1-model_v4 Histidine kinase 0.9093 206 358 GO:0000155
GO:0016020
AF-A0A015X5H6-F1-model_v4 deleted 0.9026 5 358
AF-A0A015X5H6-F1-model_v4 deleted 0.8976 5 358
AF-A0A645IJ17-F1-model_v4 Sensor histidine kinase BtsS (EC 2.7.13.3) 0.8925 195 357 GO:0000155
GO:0016020
AF-A0A3D0QD76-F1-model_v4 Signal transduction histidine kinase internal region domain-containing protein 0.8875 203 357 GO:0000155
GO:0016020

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pLDDT pTM Quality
77.55 0.53 Medium
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Predicted Structure (AlphaFold2)

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