F172569

General Info

Members Datasets Scaffolds Average Seq Length
138 96 133 436

Family's Representative Sequence

Representative Sequence 3300005617|Ga0068859_100016800|Ga0068859_1000168003
Length 483
Sequence MTNGMFGPDVRPFQGRISRRCFTSGFTRRYRICPFQGHQCMTYEINETHDPELKSWVESANDPNTDFPIQNLPFCAFRLKGYTNAAKIGVRIGECVLDVCYASFSELFSDDGSLVGLYSESSNDLNETVEYLAADEFSGFRRRLIEVLGENADEKVRKLIRRNLVNAEDCEFFSLFEIGDYTDFYCSIFHATNVGSMFRPDNPLLPNYKYVPIGYHGRASSIVISGTDIKRPKGQNRSDGEKPPVFIPCKNLDYEMEVGFFVGQGNELGRPIPIGEAEKHIFGLSLVNDWSARDIQAWEYQPLGPFLAKNFATTISPFVVTMEALAPFRTNAFVREEGDPAPLDYLNDEHDQKFGGIDINLEVYIQTQKMRDEKVEPHMLSRSNMKDLYWTIGQMLTHHASGGCNLQTGDLIATGTISGKEKSERGSMLELSWRGTEPIDLPSGETRRFLEDGDEIIMKGYCEREGFRRIGFGECRGRILPAD

Samples

Sample ID Description Type Environment
1 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
2 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
3 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
4 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
5 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
6 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
63 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
64 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
70 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
71 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
72 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
75 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
76 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
77 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
78 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
79 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
83 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
86 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
87 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
88 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
89 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
90 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
91 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
94 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
95 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
96 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.38
Metatranscriptomes 0
Isolates 3.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.17
Nodule 0
Rhizoplane 1.45
Rhizosphere 90.58
Stem 0
Stem Tuber 0
Unclassified 5.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1000663 3300000549 Bacteria 5539
2 rootL2_10172752 3300003322 Bacteria 2245
3 Ga0070670_100017689 3300005331 Bacteria 6115
4 Ga0070670_100062205 3300005331 Bacteria 3205
5 Ga0070674_100085657 3300005356 Bacteria 2262
6 Ga0070663_100121017 3300005455 Bacteria 1977
7 Ga0070681_10007539 3300005458 Bacteria 10633
8 Ga0070681_10245733 3300005458 Bacteria 1702
9 Ga0070685_10018172 3300005466 Bacteria 3777
10 Ga0070685_10021112 3300005466 Bacteria 3536
11 Ga0070679_100030095 3300005530 Bacteria 5359
12 Ga0070679_100214323 3300005530 Bacteria 1888
13 Ga0068853_100004092 3300005539 Bacteria 11235
14 Ga0068853_100134850 3300005539 Bacteria 2212
15 Ga0068852_100202118 3300005616 Bacteria 1881
16 Ga0068859_100016800 3300005617 Bacteria 7349
17 Ga0068859_100252118 3300005617 Bacteria 1855
18 Ga0068860_100122587 3300005843 Bacteria 2490
19 Ga0068862_100012272 3300005844 Bacteria 7085
20 Ga0081455_10001512 3300005937 Bacteria 28688
21 Ga0081455_10009954 3300005937 Bacteria 9720
22 Ga0081538_10046983 3300005981 Bacteria 2654
23 Ga0081539_10001041 3300005985 Bacteria 50862
24 Ga0070717_10033044 3300006028 Bacteria 4172
25 Ga0075364_10001919 3300006051 Bacteria 11578
26 Ga0075428_100313364 3300006844 Bacteria 1686
27 Ga0075430_100028926 3300006846 Bacteria 4704
28 Ga0075431_100014382 3300006847 Bacteria 8004
29 Ga0075431_100025130 3300006847 Bacteria 6106
30 Ga0075431_100089037 3300006847 Bacteria 3186
31 Ga0075433_10124910 3300006852 Bacteria 2285
32 Ga0075434_100050900 3300006871 Bacteria 4115
33 Ga0075429_100085611 3300006880 Bacteria 2747
34 Ga0097620_100016800 3300006931 Bacteria 7349
35 Ga0097620_100252120 3300006931 Bacteria 1855
36 Ga0105240_10194201 3300009093 Bacteria 2385
37 Ga0111539_10174415 3300009094 Bacteria 2512
38 Ga0105247_10006089 3300009101 Bacteria 7498
39 Ga0114129_10000201 3300009147 Bacteria 66395
40 Ga0114129_10246375 3300009147 Bacteria 2400
41 Ga0105249_10037955 3300009553 Bacteria 4372
42 Ga0105249_10090577 3300009553 Bacteria 2860
43 Ga0105249_10173749 3300009553 Bacteria 2091
44 Ga0105239_10075333 3300010375 Bacteria 3710
45 Ga0157370_10086283 3300013104 Bacteria 2949
46 Ga0163162_10081639 3300013306 Bacteria 3304
47 Ga0163162_10123955 3300013306 Bacteria 2689
48 Ga0157372_10015372 3300013307 Bacteria 8201
49 Ga0157372_10128883 3300013307 Bacteria 2910
50 Ga0157372_10317052 3300013307 Bacteria 1815
51 Ga0157375_10009303 3300013308 Bacteria 8624
52 Ga0157375_10230770 3300013308 Bacteria 2010
53 Ga0163163_10049295 3300014325 Bacteria 4144
54 Ga0163163_10077767 3300014325 Bacteria 3313
55 Ga0163163_10128052 3300014325 Bacteria 2578
56 Ga0157379_10239749 3300014968 Bacteria 1645
57 Ga0157376_10258287 3300014969 Unclassified 1631
58 Ga0163161_10015493 3300017792 Bacteria 5315
59 Ga0213872_10046381 3300021361 Bacteria 1977
60 Ga0209026_1000560 3300025250 Bacteria 25350
61 Ga0209676_1024733 3300025292 Bacteria 1938
62 Ga0207705_10004591 3300025909 Bacteria 10426
63 Ga0207707_10012272 3300025912 Bacteria 7448
64 Ga0207707_10209381 3300025912 Bacteria 1699
65 Ga0207652_10115100 3300025921 Bacteria 2388
66 Ga0207669_10157974 3300025937 Bacteria 1597
67 Ga0207711_10121055 3300025941 Bacteria 2336
68 Ga0207711_10158459 3300025941 Bacteria 2047
69 Ga0207679_10051019 3300025945 Bacteria 3027
70 Ga0207712_10001827 3300025961 Bacteria 14056
71 Ga0207676_10034275 3300026095 Bacteria 3843
72 Ga0207675_100095930 3300026118 Bacteria 2791
73 Ga0207683_10164509 3300026121 Bacteria 2007
74 Ga0207428_10004771 3300027907 Bacteria 12808
75 Ga0268265_10006638 3300028380 Bacteria 7829
76 Ga0268264_10001440 3300028381 Bacteria 22259
77 Ga0268264_10288297 3300028381 Bacteria 1541
78 Ga0307408_100012186 3300031548 Bacteria 5691
79 Ga0307408_100069768 3300031548 Bacteria 2593
80 Ga0307405_10010406 3300031731 Bacteria 4818
81 Ga0307413_10001701 3300031824 Bacteria 8578
82 Ga0307413_10004253 3300031824 Bacteria 6197
83 Ga0307413_10008835 3300031824 Bacteria 4785
84 Ga0307410_10016967 3300031852 Bacteria 4357
85 Ga0307410_10074907 3300031852 Bacteria 2358
86 Ga0307410_10131345 3300031852 Bacteria 1840
87 Ga0307407_10001714 3300031903 Bacteria 8153
88 Ga0307407_10031097 3300031903 Bacteria 2888
89 Ga0307407_10036961 3300031903 Bacteria 2695
90 Ga0307407_10116508 3300031903 Bacteria 1686
91 Ga0307412_10024224 3300031911 Bacteria 3745
92 Ga0307412_10063410 3300031911 Bacteria 2493
93 Ga0307409_100008029 3300031995 Bacteria 6364
94 Ga0307409_100094271 3300031995 Bacteria 2462
95 Ga0307409_100148419 3300031995 Bacteria 2032
96 Ga0307409_100306399 3300031995 Bacteria 1480
97 Ga0307409_100315851 3300031995 Bacteria 1460
98 Ga0307416_100009035 3300032002 Bacteria 6485
99 Ga0307416_100331200 3300032002 Bacteria 1530
100 Ga0307411_10005766 3300032005 Bacteria 6128
101 Ga0307415_100043344 3300032126 Bacteria 3002
102 Ga0307415_100078743 3300032126 Bacteria 2345
103 Ga0436364_1436746 3300037853 Bacteria 2768
104 Ga0436365_1354495 3300039437 Bacteria 2710
105 Ga0436361_0041652 3300039447 Bacteria 2021
106 Ga0495620_0000829 3300046515 Bacteria 19093
107 Ga0495668_0003456 3300046616 Bacteria 11817
108 Ga0495669_0008479 3300046684 Bacteria 4324
109 Ga0495613_0091572 3300046689 Bacteria 2202
110 Ga0495675_0085897 3300047444 Bacteria 1978
111 Ga0496106_0131939 3300048909 Bacteria 1960
112 Ga0496109_0000156 3300048912 Bacteria 66509
113 Ga0501039_0139461 3300049575 Bacteria 1905
114 Ga0501072_0009378 3300049588 Bacteria 7444
115 Ga0501073_0001018 3300049589 Bacteria 20257
116 Ga0501073_0001766 3300049589 Bacteria 16076
117 Ga0501080_0007200 3300049742 Bacteria 10043
118 Ga0501080_0009197 3300049742 Bacteria 9001
119 Ga0501083_0038857 3300049744 Bacteria 3234
120 Ga0501045_0097185 3300049824 Bacteria 2179
121 nmdc:mga05p37_53432_c1 3300050507 Bacteria 4968
122 nmdc:mga05p37_63488_c1 3300050507 Bacteria 4545
123 nmdc:mga09592_10193_c1 3300050508 Bacteria 7650
124 nmdc:mga0qj67_96624_c1 3300050509 Bacteria 2378
125 nmdc:mga06r32_1766_c2 3300050510 Bacteria 10750
126 nmdc:mga06r32_43278_c1 3300050510 Bacteria 4285
127 nmdc:mga08y16_140348_c1 3300050511 Bacteria 2512
128 nmdc:mga08y16_35484_c1 3300050511 Bacteria 5237
129 nmdc:mga0n895_49308_c1 3300050512 Bacteria 4124
130 nmdc:mga0a205_97359_c1 3300050515 Bacteria 2841
131 Ga0500641_0041885 3300053096 Bacteria 1854
132 Ga0590075_014519 3300059424 Bacteria 1926
133 Ga0501082_0122627 3300060353 Bacteria 2254

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053096 Ga0500641_0041885 Ga0500641_0041885_688_1818 369
2 3300046515 Ga0495620_0000829 Ga0495620_0000829_15958_17115 385
3 3300049589 Ga0501073_0001766 Ga0501073_0001766_934_2097 387
4 3300049742 Ga0501080_0007200 Ga0501080_0007200_3207_4370 387
5 3300005466 Ga0070685_10018172 Ga0070685_100181722 393
6 3300006028 Ga0070717_10033044 Ga0070717_100330442 394
7 3300006847 Ga0075431_100025130 Ga0075431_1000251303 394
8 3300050510 nmdc:mga06r32_1766_c2 nmdc:mga06r32_1766_c2_3106_4335 394
9 3300037853 Ga0436364_1436746 Ga0436364_1436746_1517_2734 399
10 3300013307 Ga0157372_10015372 Ga0157372_100153724 400
11 3300039437 Ga0436365_1354495 Ga0436365_1354495_869_2077 401
12 3300005937 Ga0081455_10009954 Ga0081455_1000995410 403
13 3300006846 Ga0075430_100028926 Ga0075430_1000289263 406
14 3300006847 Ga0075431_100089037 Ga0075431_1000890374 406
15 3300006880 Ga0075429_100085611 Ga0075429_1000856112 406
16 3300009147 Ga0114129_10000201 Ga0114129_100002014 406
17 3300050507 nmdc:mga05p37_53432_c1 nmdc:mga05p37_53432_c1_151_1386 406
18 3300050508 nmdc:mga09592_10193_c1 nmdc:mga09592_10193_c1_6186_7421 406
19 3300005981 Ga0081538_10046983 Ga0081538_100469832 408
20 3300005331 Ga0070670_100062205 Ga0070670_1000622053 415
21 3300049575 Ga0501039_0139461 Ga0501039_0139461_555_1826 416
22 3300049824 Ga0501045_0097185 Ga0501045_0097185_226_1497 416
23 3300060353 Ga0501082_0122627 Ga0501082_0122627_966_2237 416
24 3300031824 Ga0307413_10004253 Ga0307413_100042537 419
25 3300006051 Ga0075364_10001919 Ga0075364_100019199 423
26 iso_pu_bacteria 2643221614 2644085882 423
27 iso_pu_bacteria 2643221661 2644344942 423
28 iso_pu_bacteria 2643221666 2644369216 423
29 iso_pu_bacteria 2811994881 2812366206 425
30 iso_pu_bacteria 2923519811 2923520229 425
31 3300021361 Ga0213872_10046381 Ga0213872_100463812 426
32 3300031903 Ga0307407_10031097 Ga0307407_100310971 426
33 3300031995 Ga0307409_100315851 Ga0307409_1003158511 426
34 3300039447 Ga0436361_0041652 Ga0436361_0041652_347_1636 426
35 3300009094 Ga0111539_10174415 Ga0111539_101744153 427
36 3300050511 nmdc:mga08y16_140348_c1 nmdc:mga08y16_140348_c1_25_1353 427
37 3300025292 Ga0209676_1024733 Ga0209676_10247332 429
38 3300025250 Ga0209026_1000560 Ga0209026_10005602 430
39 3300006847 Ga0075431_100014382 Ga0075431_1000143827 431
40 3300009553 Ga0105249_10090577 Ga0105249_100905772 431
41 3300014969 Ga0157376_10258287 Ga0157376_102582872 431
42 3300031903 Ga0307407_10036961 Ga0307407_100369612 431
43 3300031995 Ga0307409_100148419 Ga0307409_1001484192 431
44 3300032002 Ga0307416_100009035 Ga0307416_1000090355 431
45 3300032126 Ga0307415_100078743 Ga0307415_1000787432 431
46 3300049589 Ga0501073_0001018 Ga0501073_0001018_5257_6606 433
47 3300049742 Ga0501080_0009197 Ga0501080_0009197_7327_8676 433
48 3300059424 Ga0590075_014519 Ga0590075_014519_378_1685 433
49 3300014325 Ga0163163_10049295 Ga0163163_100492952 435
50 3300031548 Ga0307408_100012186 Ga0307408_1000121864 435
51 3300031995 Ga0307409_100094271 Ga0307409_1000942712 435
52 3300046684 Ga0495669_0008479 Ga0495669_0008479_2576_3883 435
53 3300005356 Ga0070674_100085657 Ga0070674_1000856572 436
54 3300006852 Ga0075433_10124910 Ga0075433_101249102 436
55 3300006871 Ga0075434_100050900 Ga0075434_1000509003 436
56 3300025937 Ga0207669_10157974 Ga0207669_101579741 436
57 3300031731 Ga0307405_10010406 Ga0307405_100104061 436
58 3300031852 Ga0307410_10016967 Ga0307410_100169673 436
59 3300031903 Ga0307407_10116508 Ga0307407_101165082 436
60 3300032005 Ga0307411_10005766 Ga0307411_100057664 436
61 3300048909 Ga0496106_0131939 Ga0496106_0131939_82_1398 436
62 3300050510 nmdc:mga06r32_43278_c1 nmdc:mga06r32_43278_c1_1222_2550 436
63 3300050512 nmdc:mga0n895_49308_c1 nmdc:mga0n895_49308_c1_992_2320 436
64 3300050515 nmdc:mga0a205_97359_c1 nmdc:mga0a205_97359_c1_860_2188 436
65 3300031911 Ga0307412_10063410 Ga0307412_100634102 437
66 3300050509 nmdc:mga0qj67_96624_c1 nmdc:mga0qj67_96624_c1_485_1819 437
67 3300005455 Ga0070663_100121017 Ga0070663_1001210172 438
68 3300005616 Ga0068852_100202118 Ga0068852_1002021181 438
69 3300025909 Ga0207705_10004591 Ga0207705_100045914 438
70 3300047444 Ga0495675_0085897 Ga0495675_0085897_450_1766 438
71 3300005331 Ga0070670_100017689 Ga0070670_1000176891 439
72 3300005466 Ga0070685_10021112 Ga0070685_100211123 439
73 3300005539 Ga0068853_100004092 Ga0068853_10000409210 439
74 3300005617 Ga0068859_100252118 Ga0068859_1002521181 439
75 3300005843 Ga0068860_100122587 Ga0068860_1001225872 439
76 3300005937 Ga0081455_10001512 Ga0081455_1000151224 439
77 3300005985 Ga0081539_10001041 Ga0081539_1000104123 439
78 3300006844 Ga0075428_100313364 Ga0075428_1003133642 439
79 3300006931 Ga0097620_100252120 Ga0097620_1002521202 439
80 3300009147 Ga0114129_10246375 Ga0114129_102463752 439
81 3300014325 Ga0163163_10077767 Ga0163163_100777672 439
82 3300026118 Ga0207675_100095930 Ga0207675_1000959301 439
83 3300031995 Ga0307409_100306399 Ga0307409_1003063991 439
84 3300046689 Ga0495613_0091572 Ga0495613_0091572_740_2185 439
85 3300048912 Ga0496109_0000156 Ga0496109_0000156_20520_21845 439
86 3300049588 Ga0501072_0009378 Ga0501072_0009378_3354_4679 439
87 3300049744 Ga0501083_0038857 Ga0501083_0038857_1183_2502 439
88 3300050507 nmdc:mga05p37_63488_c1 nmdc:mga05p37_63488_c1_589_1926 439
89 3300005458 Ga0070681_10007539 Ga0070681_100075392 440
90 3300005530 Ga0070679_100214323 Ga0070679_1002143231 440
91 3300025912 Ga0207707_10012272 Ga0207707_100122721 440
92 3300025921 Ga0207652_10115100 Ga0207652_101151002 440
93 3300025941 Ga0207711_10158459 Ga0207711_101584592 440
94 3300027907 Ga0207428_10004771 Ga0207428_100047716 440
95 3300031852 Ga0307410_10131345 Ga0307410_101313452 440
96 3300050511 nmdc:mga08y16_35484_c1 nmdc:mga08y16_35484_c1_2453_3781 440
97 3300003322 rootL2_10172752 rootL2_101727522 441
98 3300005458 Ga0070681_10245733 Ga0070681_102457331 441
99 3300005539 Ga0068853_100134850 Ga0068853_1001348502 441
100 3300005617 Ga0068859_100016800 Ga0068859_1000168003 441
101 3300005844 Ga0068862_100012272 Ga0068862_1000122726 441
102 3300006931 Ga0097620_100016800 Ga0097620_1000168006 441
103 3300009093 Ga0105240_10194201 Ga0105240_101942012 441
104 3300009553 Ga0105249_10173749 Ga0105249_101737492 441
105 3300010375 Ga0105239_10075333 Ga0105239_100753334 441
106 3300013104 Ga0157370_10086283 Ga0157370_100862833 441
107 3300013306 Ga0163162_10081639 Ga0163162_100816393 441
108 3300013306 Ga0163162_10123955 Ga0163162_101239552 441
109 3300013307 Ga0157372_10128883 Ga0157372_101288833 441
110 3300013308 Ga0157375_10009303 Ga0157375_100093036 441
111 3300013308 Ga0157375_10230770 Ga0157375_102307702 441
112 3300014325 Ga0163163_10128052 Ga0163163_101280523 441
113 3300014968 Ga0157379_10239749 Ga0157379_102397492 441
114 3300017792 Ga0163161_10015493 Ga0163161_100154933 441
115 3300025912 Ga0207707_10209381 Ga0207707_102093811 441
116 3300025941 Ga0207711_10121055 Ga0207711_101210552 441
117 3300025961 Ga0207712_10001827 Ga0207712_100018273 441
118 3300026095 Ga0207676_10034275 Ga0207676_100342753 441
119 3300026121 Ga0207683_10164509 Ga0207683_101645092 441
120 3300028380 Ga0268265_10006638 Ga0268265_100066383 441
121 3300028381 Ga0268264_10001440 Ga0268264_1000144025 441
122 3300028381 Ga0268264_10288297 Ga0268264_102882972 441
123 3300031548 Ga0307408_100069768 Ga0307408_1000697682 441
124 3300031824 Ga0307413_10001701 Ga0307413_100017012 441
125 3300031903 Ga0307407_10001714 Ga0307407_100017146 441
126 3300031995 Ga0307409_100008029 Ga0307409_1000080296 441
127 3300032002 Ga0307416_100331200 Ga0307416_1003312001 441
128 3300032126 Ga0307415_100043344 Ga0307415_1000433443 441
129 3300000549 LJQas_1000663 LJQas_10006635 442
130 3300005530 Ga0070679_100030095 Ga0070679_1000300952 442
131 3300009101 Ga0105247_10006089 Ga0105247_100060896 442
132 3300009553 Ga0105249_10037955 Ga0105249_100379552 442
133 3300013307 Ga0157372_10317052 Ga0157372_103170522 442
134 3300025945 Ga0207679_10051019 Ga0207679_100510192 442
135 3300031824 Ga0307413_10008835 Ga0307413_100088356 442
136 3300031852 Ga0307410_10074907 Ga0307410_100749072 442
137 3300031911 Ga0307412_10024224 Ga0307412_100242241 442
138 3300046616 Ga0495668_0003456 Ga0495668_0003456_1076_2404 442

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01557

FAA_hydrolase

Fumarylacetoacetate (FAA) hydrolase family

181

480

0.88

PF09298

FAA_hydrolase_N

Fumarylacetoacetase N-terminal

70

173

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5ti1-assembly1.cif.gz_B crystal structure of fumarylacetoacetate hydrolase from burkholderia xenovorans lb400 0.9585 8 442
5ti1-assembly4.cif.gz_G crystal structure of fumarylacetoacetate hydrolase from burkholderia xenovorans lb400 0.9584 8 442
5ti1-assembly1.cif.gz_A crystal structure of fumarylacetoacetate hydrolase from burkholderia xenovorans lb400 0.9495 8 442
4qku-assembly2.cif.gz_C crystal structure of a putative hydrolase from burkholderia cenocepacia 0.9488 8 442
4qku-assembly1.cif.gz_A crystal structure of a putative hydrolase from burkholderia cenocepacia 0.9482 8 442
ID Description Score Start End Superfamily
af_Q1ZXQ1_120_425_3.90.850.10 Alpha Beta;Alpha-Beta Complex;Fumarylacetoacetate hydrolase; domain 2;Fumarylacetoacetase-like, C-terminal domain 0.9551 133 442 3.90.850.10
af_Q1ZXQ1_120_425_3.90.850.10 Alpha Beta;Alpha-Beta Complex;Fumarylacetoacetate hydrolase; domain 2;Fumarylacetoacetase-like, C-terminal domain 0.9459 133 442 3.90.850.10
5ti1E01 Mainly Beta;Roll;SH3 type barrels.;Fumarylacetoacetase, N-terminal domain 0.8649 8 130 2.30.30.230
af_Q9VZI8_1_112_2.30.30.230 Mainly Beta;Roll;SH3 type barrels.;Fumarylacetoacetase, N-terminal domain 0.8643 13 130 2.30.30.230
1qcnB01 Mainly Beta;Roll;SH3 type barrels.;Fumarylacetoacetase, N-terminal domain 0.8519 22 130 2.30.30.230
ID Description Score Start End GO Terms
AF-A0A353CE29-F1-model_v4 Fumarylacetoacetase 0.9966 325 442 GO:0004334
GO:0006559
GO:0006572
GO:1902000
AF-A0A7V8LV16-F1-model_v4 deleted 0.9961 276 439
AF-A0A109LME1-F1-model_v4 Fumarylacetoacetate (FAA) hydrolase family protein 0.9942 276 442 GO:0004334
GO:0006559
GO:0006572
GO:1902000
AF-S6TH18-F1-model_v4 Fumarylacetoacetase 0.9908 302 439 GO:0004334
GO:0006559
GO:0006572
GO:1902000
AF-A0A7T9FU59-F1-model_v4 deleted 0.9897 2 442

Feature Viewer

pLDDT pTM Quality
93.16 0.93 High
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Predicted Structure (AlphaFold2)

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