F172461

General Info

Members Datasets Scaffolds Average Seq Length
138 99 138 393

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100276673|Ga0070679_1002766732
Length 424
Sequence MNNQASNTMTTKSSWRDLGLIYTAAWLRSFGIGLLGVILGIFLYRRGLSSIAIGAVLAAGIAGSAAGTIFVTFRADSVGRRRTLCCLSLLTALGSVAVIFNLSLPILLAVTFFGMLNGMGTDRSAAYALEQALIPSMVPDERRTWSLAWYSLVLDASGALGALAAALPLMMQRHLGMDLNAAYHYIFVGYGAINLASAGLYLLLSAQVEHPRVNLPGKTTAAVSRETKSTVKRLSALFAIDAFGGGFLIDALVAYWFFRRFGIAENNLAVLFFVVHILNALSHLGAAALAKRIGLIKTMIFTHLPSSIFLIAVPLAPSATWAVILFLLRESLVEMDVPTRQSYVAGVVPPEERTYASGITNLTRNAAWAASSSLAGVFMQTIAFSAPLLLGGGLKIIYDILLWRAFRHVAPPEEKIKDNVKAQK

Samples

Sample ID Description Type Environment
1 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
64 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
65 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
66 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
79 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
80 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
81 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
82 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049672 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought Metagenome Rhizosphere
92 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
95 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
96 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
97 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
98 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
99 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.35
Rhizosphere 94.93
Stem 0
Stem Tuber 0
Unclassified 0.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10006919 3300002459 Bacteria 2313
2 rootL2_10099045 3300003322 Bacteria 11297
3 Ga0070690_100020940 3300005330 Bacteria 3989
4 Ga0070680_100125929 3300005336 Bacteria 2140
5 Ga0070689_100234837 3300005340 Bacteria 1508
6 Ga0070675_100072710 3300005354 Bacteria 2854
7 Ga0070671_100001547 3300005355 Bacteria 17307
8 Ga0070713_100039339 3300005436 Bacteria 3837
9 Ga0070701_10058352 3300005438 Bacteria 2025
10 Ga0070694_100185724 3300005444 Bacteria 1540
11 Ga0070708_100123776 3300005445 Bacteria 2388
12 Ga0070681_10071331 3300005458 Bacteria 3438
13 Ga0070681_10177052 3300005458 Bacteria 2055
14 Ga0070685_10194623 3300005466 Bacteria 1314
15 Ga0070706_100000402 3300005467 Bacteria 52276
16 Ga0070706_100021409 3300005467 Bacteria 5955
17 Ga0070707_100000182 3300005468 Bacteria 61765
18 Ga0070707_100001591 3300005468 Bacteria 21981
19 Ga0070707_100001780 3300005468 Bacteria 20725
20 Ga0070707_100284017 3300005468 Unclassified 1608
21 Ga0070698_100058574 3300005471 Bacteria 3894
22 Ga0070699_100236853 3300005518 Bacteria 1628
23 Ga0070679_100276673 3300005530 Unclassified 1632
24 Ga0070684_100006708 3300005535 Bacteria 8924
25 Ga0070697_100006463 3300005536 Bacteria 9076
26 Ga0070697_100077503 3300005536 Unclassified 2734
27 Ga0068853_100009615 3300005539 Bacteria 7791
28 Ga0068853_100066096 3300005539 Bacteria 3140
29 Ga0070695_100107979 3300005545 Unclassified 1884
30 Ga0070696_100008096 3300005546 Bacteria 7027
31 Ga0070696_100044715 3300005546 Bacteria 3067
32 Ga0070696_100064675 3300005546 Unclassified 2563
33 Ga0070696_100107701 3300005546 Bacteria 2004
34 Ga0070696_100179482 3300005546 Bacteria 1570
35 Ga0070693_100008869 3300005547 Bacteria 4985
36 Ga0070704_100003563 3300005549 Bacteria 8948
37 Ga0068855_100057989 3300005563 Bacteria 4537
38 Ga0068856_100049849 3300005614 Bacteria 4127
39 Ga0070702_100042892 3300005615 Bacteria 2546
40 Ga0068852_100158098 3300005616 Bacteria 2113
41 Ga0068859_100000010 3300005617 Bacteria 311529
42 Ga0068859_100027493 3300005617 Bacteria 5705
43 Ga0068859_100088997 3300005617 Bacteria 3137
44 Ga0068861_100012409 3300005719 Bacteria 5941
45 Ga0068861_100040047 3300005719 Bacteria 3501
46 Ga0068863_100067333 3300005841 Bacteria 3387
47 Ga0068860_100096793 3300005843 Unclassified 2813
48 Ga0068860_100188953 3300005843 Bacteria 1993
49 Ga0097621_100293005 3300006237 Bacteria 1435
50 Ga0068871_100013549 3300006358 Bacteria 6053
51 Ga0075429_100008411 3300006880 Bacteria 8979
52 Ga0075429_100196694 3300006880 Bacteria 1766
53 Ga0097620_100000010 3300006931 Bacteria 311529
54 Ga0097620_100027492 3300006931 Bacteria 5705
55 Ga0097620_100088996 3300006931 Bacteria 3137
56 Ga0075435_100120813 3300007076 Unclassified 2186
57 Ga0075435_100201559 3300007076 Bacteria 1686
58 Ga0105240_10129219 3300009093 Unclassified 3032
59 Ga0105240_10163845 3300009093 Bacteria 2638
60 Ga0111539_10009729 3300009094 Bacteria 12135
61 Ga0111539_10018852 3300009094 Bacteria 8538
62 Ga0111539_10021647 3300009094 Bacteria 7909
63 Ga0111539_10173138 3300009094 Bacteria 2522
64 Ga0105245_10021163 3300009098 Bacteria 5703
65 Ga0105242_10116995 3300009176 Bacteria 2281
66 Ga0105238_10031001 3300009551 Bacteria 5443
67 Ga0105238_10091023 3300009551 Bacteria 3038
68 Ga0105238_10091184 3300009551 Bacteria 3035
69 Ga0157373_10102787 3300013100 Bacteria 2010
70 Ga0157369_10034359 3300013105 Bacteria 5565
71 Ga0157378_10061568 3300013297 Bacteria 3350
72 Ga0157380_10079732 3300014326 Bacteria 2674
73 Ga0207684_10000004 3300025910 Bacteria 755956
74 Ga0207684_10040821 3300025910 Unclassified 3934
75 Ga0207707_10150345 3300025912 Bacteria 2036
76 Ga0207695_10034726 3300025913 Bacteria 5479
77 Ga0207693_10116106 3300025915 Bacteria 2102
78 Ga0207660_10056562 3300025917 Unclassified 2807
79 Ga0207646_10000015 3300025922 Bacteria 337243
80 Ga0207646_10000016 3300025922 Bacteria 337048
81 Ga0207646_10007644 3300025922 Bacteria 10941
82 Ga0207646_10245293 3300025922 Unclassified 1618
83 Ga0207681_10128268 3300025923 Unclassified 1872
84 Ga0207687_10225498 3300025927 Bacteria 1478
85 Ga0207700_10002301 3300025928 Bacteria 10958
86 Ga0207644_10004662 3300025931 Bacteria 8911
87 Ga0207667_10015613 3300025949 Bacteria 8615
88 Ga0207702_10216450 3300026078 Bacteria 1783
89 Ga0207641_10102460 3300026088 Bacteria 2524
90 Ga0207675_100095376 3300026118 Unclassified 2799
91 Ga0207428_10006382 3300027907 Bacteria 10898
92 Ga0207428_10065808 3300027907 Bacteria 2857
93 Ga0265320_10017264 3300031240 Bacteria 4013
94 Ga0265313_10048789 3300031595 Bacteria 2041
95 Ga0373923_0045806 3300035111 Unclassified 1817
96 Ga0373923_0093029 3300035111 Bacteria 1321
97 Ga0373955_0007127 3300035172 Bacteria 5123
98 Ga0373927_0114981 3300035695 Unclassified 1754
99 Ga0373937_0000140 3300036401 Bacteria 69752
100 Ga0373937_0067037 3300036401 Unclassified 3307
101 Ga0373925_0295320 3300037068 Bacteria 1307
102 Ga0395898_0096555 3300037466 Bacteria 2839
103 Ga0451577_0046043 3300042876 Unclassified 3904
104 Ga0453683_0003392 3300044673 Bacteria 11763
105 Ga0453683_0137659 3300044673 Unclassified 1540
106 Ga0453684_0057482 3300044712 Bacteria 5034
107 Ga0466957_0000091 3300044842 Bacteria 36379
108 Ga0466959_0025401 3300045049 Bacteria 4391
109 Ga0451576_0313766 3300045051 Bacteria 1640
110 Ga0495651_0040869 3300046462 Bacteria 3603
111 Ga0495582_0057812 3300046473 Bacteria 2138
112 Ga0495594_0044208 3300046499 Unclassified 2443
113 Ga0495594_0086769 3300046499 Unclassified 1751
114 Ga0495594_0089673 3300046499 Bacteria 1722
115 Ga0495621_0007121 3300046539 Bacteria 3298
116 Ga0495658_0027158 3300046683 Bacteria 3076
117 Ga0495658_0111946 3300046683 Unclassified 1642
118 Ga0495636_0004143 3300047318 Bacteria 5682
119 Ga0496102_0031874 3300048905 Bacteria 4732
120 Ga0496105_0001619 3300048908 Bacteria 15993
121 Ga0496109_0150466 3300048912 Bacteria 2179
122 Ga0496110_0057159 3300048913 Bacteria 3434
123 Ga0496111_0006319 3300048914 Bacteria 7682
124 Ga0496115_0111428 3300048918 Bacteria 2248
125 Ga0501042_0044764 3300049578 Bacteria 3154
126 Ga0501076_0221786 3300049592 Bacteria 1545
127 Ga0501239_005613 3300049672 Bacteria 1269
128 Ga0501268_005888 3300049765 Unclassified 1777
129 Ga0501044_0126633 3300049823 Bacteria 2551
130 nmdc:mga09592_154491_c1 3300050508 Bacteria 1981
131 nmdc:mga09592_3075_c1 3300050508 Bacteria 13532
132 nmdc:mga08y16_204284_c1 3300050511 Bacteria 2047
133 nmdc:mga08y16_61031_c1 3300050511 Bacteria 3937
134 nmdc:mga08y16_70955_c1 3300050511 Bacteria 3631
135 nmdc:mga0rr50_91174_c1 3300050513 Unclassified 2373
136 nmdc:mga0a205_210062_c1 3300050515 Bacteria 1835
137 Ga0501084_0150171 3300054114 Bacteria 1964
138 Ga0501082_0036273 3300060353 Bacteria 4248

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0057482 Ga0453684_0057482_2893_4140 341
2 3300049672 Ga0501239_005613 Ga0501239_005613_19_1107 341
3 3300049765 Ga0501268_005888 Ga0501268_005888_289_1518 343
4 3300046499 Ga0495594_0089673 Ga0495594_0089673_517_1611 344
5 3300049592 Ga0501076_0221786 Ga0501076_0221786_13_1206 345
6 3300005354 Ga0070675_100072710 Ga0070675_1000727102 353
7 3300005617 Ga0068859_100088997 Ga0068859_1000889972 353
8 3300006358 Ga0068871_100013549 Ga0068871_1000135493 353
9 3300006931 Ga0097620_100088996 Ga0097620_1000889962 353
10 3300046539 Ga0495621_0007121 Ga0495621_0007121_690_1883 355
11 3300050515 nmdc:mga0a205_210062_c1 nmdc:mga0a205_210062_c1_740_1825 360
12 3300005546 Ga0070696_100064675 Ga0070696_1000646752 364
13 3300005549 Ga0070704_100003563 Ga0070704_1000035634 364
14 3300005617 Ga0068859_100000010 Ga0068859_100000010244 364
15 3300006931 Ga0097620_100000010 Ga0097620_10000001024 364
16 3300009094 Ga0111539_10173138 Ga0111539_101731382 364
17 3300050511 nmdc:mga08y16_204284_c1 nmdc:mga08y16_204284_c1_753_1943 364
18 3300054114 Ga0501084_0150171 Ga0501084_0150171_118_1347 365
19 3300060353 Ga0501082_0036273 Ga0501082_0036273_62_1303 365
20 3300049578 Ga0501042_0044764 Ga0501042_0044764_672_1865 366
21 3300049823 Ga0501044_0126633 Ga0501044_0126633_1086_2186 366
22 3300025923 Ga0207681_10128268 Ga0207681_101282682 367
23 3300005546 Ga0070696_100179482 Ga0070696_1001794822 368
24 3300005444 Ga0070694_100185724 Ga0070694_1001857242 371
25 3300005468 Ga0070707_100284017 Ga0070707_1002840172 372
26 3300005615 Ga0070702_100042892 Ga0070702_1000428921 372
27 3300005719 Ga0068861_100040047 Ga0068861_1000400471 372
28 3300013297 Ga0157378_10061568 Ga0157378_100615682 372
29 3300025922 Ga0207646_10245293 Ga0207646_102452931 372
30 3300005355 Ga0070671_100001547 Ga0070671_1000015477 373
31 3300025931 Ga0207644_10004662 Ga0207644_100046623 373
32 3300014326 Ga0157380_10079732 Ga0157380_100797322 374
33 3300025922 Ga0207646_10000015 Ga0207646_10000015224 374
34 3300037068 Ga0373925_0295320 Ga0373925_0295320_21_1154 374
35 3300005467 Ga0070706_100000402 Ga0070706_10000040210 375
36 3300005468 Ga0070707_100001591 Ga0070707_10000159110 375
37 3300005518 Ga0070699_100236853 Ga0070699_1002368531 375
38 3300005536 Ga0070697_100077503 Ga0070697_1000775032 375
39 3300005545 Ga0070695_100107979 Ga0070695_1001079792 375
40 3300009094 Ga0111539_10018852 Ga0111539_100188527 375
41 3300025910 Ga0207684_10000004 Ga0207684_10000004251 375
42 3300025922 Ga0207646_10007644 Ga0207646_1000764411 375
43 3300027907 Ga0207428_10065808 Ga0207428_100658081 375
44 3300050511 nmdc:mga08y16_61031_c1 nmdc:mga08y16_61031_c1_2264_3466 375
45 3300005546 Ga0070696_100044715 Ga0070696_1000447152 377
46 3300048918 Ga0496115_0111428 Ga0496115_0111428_20_1162 377
47 3300005841 Ga0068863_100067333 Ga0068863_1000673332 381
48 3300026088 Ga0207641_10102460 Ga0207641_101024602 381
49 3300044673 Ga0453683_0003392 Ga0453683_0003392_3939_5108 381
50 3300005467 Ga0070706_100021409 Ga0070706_1000214094 382
51 3300005468 Ga0070707_100001780 Ga0070707_1000017805 382
52 3300005471 Ga0070698_100058574 Ga0070698_1000585744 382
53 3300009094 Ga0111539_10009729 Ga0111539_1000972911 382
54 3300025910 Ga0207684_10040821 Ga0207684_100408211 382
55 3300042876 Ga0451577_0046043 Ga0451577_0046043_1265_2437 382
56 3300044673 Ga0453683_0137659 Ga0453683_0137659_293_1465 382
57 3300006880 Ga0075429_100196694 Ga0075429_1001966942 388
58 3300050508 nmdc:mga09592_154491_c1 nmdc:mga09592_154491_c1_458_1627 388
59 3300037466 Ga0395898_0096555 Ga0395898_0096555_376_1620 390
60 3300007076 Ga0075435_100120813 Ga0075435_1001208132 391
61 3300031240 Ga0265320_10017264 Ga0265320_100172644 391
62 3300031595 Ga0265313_10048789 Ga0265313_100487892 391
63 3300050513 nmdc:mga0rr50_91174_c1 nmdc:mga0rr50_91174_c1_384_1598 391
64 3300005436 Ga0070713_100039339 Ga0070713_1000393391 393
65 3300005536 Ga0070697_100006463 Ga0070697_1000064634 395
66 3300005330 Ga0070690_100020940 Ga0070690_1000209404 396
67 3300005340 Ga0070689_100234837 Ga0070689_1002348372 396
68 3300005438 Ga0070701_10058352 Ga0070701_100583521 396
69 3300005466 Ga0070685_10194623 Ga0070685_101946231 396
70 3300005617 Ga0068859_100027493 Ga0068859_1000274933 396
71 3300005843 Ga0068860_100096793 Ga0068860_1000967932 396
72 3300005843 Ga0068860_100188953 Ga0068860_1001889532 396
73 3300006931 Ga0097620_100027492 Ga0097620_1000274923 396
74 3300006237 Ga0097621_100293005 Ga0097621_1002930051 397
75 3300006880 Ga0075429_100008411 Ga0075429_1000084113 397
76 3300050508 nmdc:mga09592_3075_c1 nmdc:mga09592_3075_c1_10269_11465 397
77 3300003322 rootL2_10099045 rootL2_1009904510 400
78 3300005546 Ga0070696_100008096 Ga0070696_1000080961 401
79 3300005719 Ga0068861_100012409 Ga0068861_1000124093 401
80 3300026118 Ga0207675_100095376 Ga0207675_1000953761 401
81 3300046473 Ga0495582_0057812 Ga0495582_0057812_395_1603 401
82 3300046683 Ga0495658_0027158 Ga0495658_0027158_297_1505 401
83 3300046462 Ga0495651_0040869 Ga0495651_0040869_510_1772 402
84 3300046499 Ga0495594_0086769 Ga0495594_0086769_133_1356 403
85 3300047318 Ga0495636_0004143 Ga0495636_0004143_905_2134 403
86 3300048912 Ga0496109_0150466 Ga0496109_0150466_762_1976 403
87 3300005458 Ga0070681_10071331 Ga0070681_100713312 404
88 3300005547 Ga0070693_100008869 Ga0070693_1000088692 404
89 3300005614 Ga0068856_100049849 Ga0068856_1000498492 404
90 3300007076 Ga0075435_100201559 Ga0075435_1002015592 404
91 3300009094 Ga0111539_10021647 Ga0111539_100216477 404
92 3300009098 Ga0105245_10021163 Ga0105245_100211632 404
93 3300009176 Ga0105242_10116995 Ga0105242_101169952 404
94 3300025915 Ga0207693_10116106 Ga0207693_101161062 404
95 3300025927 Ga0207687_10225498 Ga0207687_102254981 404
96 3300026078 Ga0207702_10216450 Ga0207702_102164502 404
97 3300027907 Ga0207428_10006382 Ga0207428_100063824 404
98 3300035111 Ga0373923_0045806 Ga0373923_0045806_236_1462 404
99 3300035111 Ga0373923_0093029 Ga0373923_0093029_59_1294 404
100 3300035172 Ga0373955_0007127 Ga0373955_0007127_2454_3680 404
101 3300035695 Ga0373927_0114981 Ga0373927_0114981_350_1576 404
102 3300036401 Ga0373937_0067037 Ga0373937_0067037_955_2190 404
103 3300046499 Ga0495594_0044208 Ga0495594_0044208_322_1548 404
104 3300046683 Ga0495658_0111946 Ga0495658_0111946_316_1542 404
105 3300048905 Ga0496102_0031874 Ga0496102_0031874_1288_2514 404
106 3300048913 Ga0496110_0057159 Ga0496110_0057159_1038_2264 404
107 3300048914 Ga0496111_0006319 Ga0496111_0006319_5810_7036 404
108 3300050511 nmdc:mga08y16_70955_c1 nmdc:mga08y16_70955_c1_1300_2550 404
109 3300005336 Ga0070680_100125929 Ga0070680_1001259292 405
110 3300005468 Ga0070707_100000182 Ga0070707_10000018227 405
111 3300009093 Ga0105240_10129219 Ga0105240_101292194 405
112 3300013100 Ga0157373_10102787 Ga0157373_101027873 405
113 3300025922 Ga0207646_10000016 Ga0207646_10000016136 405
114 3300044842 Ga0466957_0000091 Ga0466957_0000091_33795_35024 405
115 3300045049 Ga0466959_0025401 Ga0466959_0025401_270_1499 406
116 3300045051 Ga0451576_0313766 Ga0451576_0313766_128_1381 407
117 3300005563 Ga0068855_100057989 Ga0068855_1000579893 408
118 3300009093 Ga0105240_10163845 Ga0105240_101638453 408
119 3300009551 Ga0105238_10031001 Ga0105238_100310015 408
120 3300025913 Ga0207695_10034726 Ga0207695_100347263 408
121 3300025949 Ga0207667_10015613 Ga0207667_100156134 408
122 3300036401 Ga0373937_0000140 Ga0373937_0000140_56290_57537 408
123 3300005458 Ga0070681_10177052 Ga0070681_101770521 409
124 3300005535 Ga0070684_100006708 Ga0070684_1000067088 409
125 3300005539 Ga0068853_100009615 Ga0068853_1000096155 409
126 3300005539 Ga0068853_100066096 Ga0068853_1000660962 409
127 3300005546 Ga0070696_100107701 Ga0070696_1001077012 409
128 3300005616 Ga0068852_100158098 Ga0068852_1001580982 409
129 3300009551 Ga0105238_10091023 Ga0105238_100910232 409
130 3300009551 Ga0105238_10091184 Ga0105238_100911842 409
131 3300013105 Ga0157369_10034359 Ga0157369_100343594 409
132 3300025912 Ga0207707_10150345 Ga0207707_101503451 409
133 3300025928 Ga0207700_10002301 Ga0207700_100023017 409
134 3300005445 Ga0070708_100123776 Ga0070708_1001237762 410
135 3300005530 Ga0070679_100276673 Ga0070679_1002766732 411
136 3300025917 Ga0207660_10056562 Ga0207660_100565623 411
137 3300002459 JGI24751J29686_10006919 JGI24751J29686_100069192 412
138 3300048908 Ga0496105_0001619 Ga0496105_0001619_3261_4523 412

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

21

335

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8g92-assembly1.cif.gz_A structure of inhibitor 16d-bound spns2 0.7994 2 389
8t6b-assembly1.cif.gz_A human vmat2 in complex with serotonin 0.7976 7 398
8t6b-assembly1.cif.gz_A human vmat2 in complex with serotonin 0.7846 7 398
6kkl-assembly1.cif.gz_A crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward conformation (h115n mutant) 0.784 7 394
6kkl-assembly1.cif.gz_A crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward conformation (h115n mutant) 0.7748 7 394
ID Description Score Start End Superfamily
af_A0A1D8PNU2_13_476_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8914 8 395 1.20.1250.20
af_P47159_20_427_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8752 13 385 1.20.1250.20
af_A4HWI5_421_596_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8692 221 392 1.20.1250.20
af_Q55F73_59_238_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8627 224 389 1.20.1250.20
af_Q5API4_21_440_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8603 7 385 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A2V8U2A1-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9581 7 261 GO:0016020
GO:0022857
AF-A0A1Q7L8A5-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9477 6 401 GO:0016020
GO:0022857
AF-A0A1Q7ZH00-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9447 7 401 GO:0016020
GO:0022857
AF-A0A3N5HQX6-F1-model_v4 MFS transporter 0.9428 4 401 GO:0016020
GO:0022857
AF-A0A2H0LCS4-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9418 7 402 GO:0016020
GO:0022857

Feature Viewer

pLDDT pTM Quality
88.12 0.89 High
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Predicted Structure (AlphaFold2)

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