F169758

General Info

Members Datasets Scaffolds Average Seq Length
137 68 274 299

Family's Representative Sequence

Representative Sequence 3300012513|Ga0157326_1005944|Ga0157326_10059442
Length 319
Sequence MGCRPGRSAPVGQGFLAVVAKEGAMSISLRHRRAARDAAAARPREAFVFSGGGSLGAAQIGSLRALLEAGIRPDVVVGCSVGALNAAALAVDPTLDRVLEMERVWRGVEREHVFGRSRRLAPTPLLNAVRRDDHLYEPEALRSLVRAWVPIADLADTAVPCHVVTTDLERGQPAWWSSGDPVEVLSASACLPALFPPVRLGDSLHVDGGVTTPVPVNRALELGAMRVWVLDVSGGILGRKGARMTALDVLLHSFAISRSLLDQQAPGPHPDQQVVRLRRPDVGHLEMRDFSQTNRLLAAGYAVAREALHALEVTARRTG

Samples

Sample ID Description Type Environment
1 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
15 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
16 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
17 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
20 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
21 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
24 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
28 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
29 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
30 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
46 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
47 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
48 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
49 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
52 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
53 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
54 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
55 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
56 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
57 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
58 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
59 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
60 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
61 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
62 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
63 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
67 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
68 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.24
Metatranscriptomes 8.76
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.19
Rhizosphere 94.89
Stem 0
Stem Tuber 0
Unclassified 2.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157326_1005944 3300012513 Bacteria 1297
2 Ga0070658_10000814 3300005327 Bacteria 26670
3 Ga0070658_10008045 3300005327 Bacteria 8477
4 Ga0070658_10009619 3300005327 Bacteria 7760
5 Ga0070658_10054353 3300005327 Bacteria 3251
6 Ga0070683_100040393 3300005329 Bacteria 4290
7 Ga0070683_100450430 3300005329 Bacteria 1228
8 Ga0068869_100111476 3300005334 Bacteria 2082
9 Ga0070680_100000061 3300005336 Bacteria 56357
10 Ga0070680_100000279 3300005336 Bacteria 33924
11 Ga0070680_100001185 3300005336 Bacteria 18761
12 Ga0070680_100086178 3300005336 Bacteria 2596
13 Ga0070660_100048003 3300005339 Bacteria 3278
14 Ga0070660_100073094 3300005339 Bacteria 2681
15 Ga0070660_100176328 3300005339 Bacteria 1729
16 Ga0070692_10071422 3300005345 Bacteria 1850
17 Ga0070659_100000294 3300005366 Bacteria 39077
18 Ga0070659_100000541 3300005366 Bacteria 27562
19 Ga0070659_100005650 3300005366 Bacteria 8990
20 Ga0070659_100059122 3300005366 Bacteria 3026
21 Ga0070708_100060295 3300005445 Bacteria 3386
22 Ga0070681_10000009 3300005458 Bacteria 146582
23 Ga0070681_10000077 3300005458 Bacteria 72675
24 Ga0070681_10000471 3300005458 Bacteria 32815
25 Ga0070681_10011834 3300005458 Bacteria 8649
26 Ga0070681_10072412 3300005458 Bacteria 3409
27 Ga0070681_10206662 3300005458 Bacteria 1880
28 Ga0070679_100000107 3300005530 Bacteria 65501
29 Ga0070679_100000135 3300005530 Bacteria 59584
30 Ga0070679_100000720 3300005530 Bacteria 28535
31 Ga0070679_100244942 3300005530 Bacteria 1749
32 Ga0070679_100246622 3300005530 Bacteria 1743
33 Ga0070679_100281988 3300005530 Bacteria 1614
34 Ga0070679_100341610 3300005530 Unclassified 1445
35 Ga0070684_100039088 3300005535 Bacteria 4080
36 Ga0070684_100120346 3300005535 Bacteria 2362
37 Ga0070684_100516249 3300005535 Bacteria 1107
38 Ga0068855_100195231 3300005563 Bacteria 2281
39 Ga0105245_10053744 3300009098 Bacteria 3616
40 Ga0105245_10097796 3300009098 Bacteria 2711
41 Ga0105245_10302789 3300009098 Unclassified 1569
42 Ga0105237_10006117 3300009545 Bacteria 13454
43 Ga0105237_10039376 3300009545 Bacteria 4772
44 Ga0157371_10017523 3300013102 Bacteria 5320
45 Ga0157371_10022119 3300013102 Bacteria 4664
46 Ga0157370_10047629 3300013104 Bacteria 4108
47 Ga0157369_10001599 3300013105 Bacteria 27722
48 Ga0157369_10002510 3300013105 Bacteria 21969
49 Ga0157369_10002584 3300013105 Bacteria 21674
50 Ga0157369_10014305 3300013105 Bacteria 8963
51 Ga0157369_10049026 3300013105 Bacteria 4580
52 Ga0157369_10180279 3300013105 Bacteria 2222
53 Ga0157369_10346318 3300013105 Bacteria 1543
54 Ga0157372_10047098 3300013307 Bacteria 4789
55 Ga0157372_10285348 3300013307 Bacteria 1920
56 Ga0157372_10373038 3300013307 Bacteria 1663
57 Ga0197907_11301567 3300020069 Bacteria 2210
58 Ga0206356_11098761 3300020070 Bacteria 1441
59 Ga0206349_1571958 3300020075 Bacteria 2119
60 Ga0206355_1159494 3300020076 Bacteria 1618
61 Ga0206351_10051165 3300020077 Bacteria 1545
62 Ga0206354_10063131 3300020081 Bacteria 1153
63 Ga0206354_10667016 3300020081 Bacteria 9751
64 Ga0206353_11212436 3300020082 Bacteria 4019
65 Ga0213873_10013208 3300021358 Bacteria 1807
66 Ga0213874_10022432 3300021377 Bacteria 1752
67 Ga0213874_10050050 3300021377 Bacteria 1279
68 Ga0224712_10005330 3300022467 Bacteria 3571
69 Ga0224712_10069809 3300022467 Bacteria 1423
70 Ga0224712_10085683 3300022467 Bacteria 1309
71 Ga0224712_10104686 3300022467 Bacteria 1205
72 Ga0207705_10002542 3300025909 Bacteria 14047
73 Ga0207705_10008780 3300025909 Bacteria 7366
74 Ga0207707_10000089 3300025912 Bacteria 90919
75 Ga0207707_10000277 3300025912 Bacteria 55264
76 Ga0207707_10000458 3300025912 Bacteria 42371
77 Ga0207707_10070025 3300025912 Bacteria 3057
78 Ga0207707_10234277 3300025912 Bacteria 1597
79 Ga0207671_10185717 3300025914 Bacteria 1619
80 Ga0207660_10000091 3300025917 Bacteria 49157
81 Ga0207660_10000649 3300025917 Bacteria 23431
82 Ga0207660_10046996 3300025917 Bacteria 3049
83 Ga0207660_10069484 3300025917 Bacteria 2558
84 Ga0207657_10044948 3300025919 Bacteria 3879
85 Ga0207657_10075660 3300025919 Bacteria 2841
86 Ga0207657_10252948 3300025919 Bacteria 1404
87 Ga0207652_10000015 3300025921 Bacteria 193042
88 Ga0207652_10000118 3300025921 Bacteria 87541
89 Ga0207652_10000333 3300025921 Bacteria 48970
90 Ga0207652_10167085 3300025921 Bacteria 1973
91 Ga0207652_10170728 3300025921 Bacteria 1951
92 Ga0207652_10378006 3300025921 Bacteria 1279
93 Ga0207652_10448620 3300025921 Bacteria 1163
94 Ga0207687_10170680 3300025927 Bacteria 1677
95 Ga0207690_10000426 3300025932 Bacteria 27493
96 Ga0207690_10001825 3300025932 Bacteria 13064
97 Ga0207690_10024792 3300025932 Bacteria 3760
98 Ga0207690_10027058 3300025932 Bacteria 3621
99 Ga0207686_10412810 3300025934 Bacteria 1031
100 Ga0207689_10139426 3300025942 Bacteria 1997
101 Ga0207661_10030681 3300025944 Bacteria 4144
102 Ga0207667_10293026 3300025949 Bacteria 1662
103 Ga0207677_10002090 3300026023 Bacteria 10514
104 Ga0207677_10074587 3300026023 Bacteria 2408
105 Ga0207683_10330588 3300026121 Bacteria 1397
106 Ga0265338_10070917 3300028800 Bacteria 2984
107 Ga0265325_10017631 3300031241 Bacteria 3967
108 Ga0265340_10011108 3300031247 Bacteria 4799
109 Ga0265339_10013106 3300031249 Bacteria 5035
110 Ga0265316_10138601 3300031344 Bacteria 1829
111 Ga0265314_10191753 3300031711 Unclassified 1215
112 Ga0265342_10038935 3300031712 Bacteria 2892
113 Ga0436360_0306089 3300039438 Bacteria 1137
114 Ga0436361_0372061 3300039447 Bacteria 4668
115 Ga0436363_0606704 3300039450 Bacteria 1641
116 Ga0436363_1175362 3300039450 Bacteria 2308
117 Ga0436362_0557435 3300039453 Bacteria 1758
118 Ga0466966_0101212 3300044684 Bacteria 1782
119 Ga0466966_0118220 3300044684 Bacteria 1630
120 Ga0466961_0021440 3300044693 Bacteria 4158
121 Ga0466961_0126950 3300044693 Bacteria 1600
122 Ga0466961_0128963 3300044693 Bacteria 1585
123 Ga0466959_0394744 3300045049 Bacteria 941
124 Ga0466958_0178151 3300045836 Bacteria 1348
125 Ga0495669_0002047 3300046684 Bacteria 8268
126 Ga0495680_0193154 3300047322 Bacteria 1464
127 Ga0496108_0543098 3300048911 Archaea 1014
128 Ga0496109_0088039 3300048912 Bacteria 2869
129 Ga0496110_0218299 3300048913 Archaea 1734
130 Ga0501032_0017109 3300049569 Bacteria 5095
131 Ga0501034_0179295 3300049571 Bacteria 2084
132 Ga0501070_0000918 3300049586 Bacteria 26690
133 Ga0501070_0002657 3300049586 Bacteria 15598
134 Ga0501070_0003127 3300049586 Bacteria 14411
135 Ga0501080_0001736 3300049742 Bacteria 18660
136 Ga0501080_0136640 3300049742 Bacteria 2268
137 Ga0495601_0053472 3300053077 Bacteria 2553
138 Ga0157326_1005944
139 Ga0070658_10000814
140 Ga0070658_10008045
141 Ga0070658_10009619
142 Ga0070658_10054353
143 Ga0070683_100040393
144 Ga0070683_100450430
145 Ga0068869_100111476
146 Ga0070680_100000061
147 Ga0070680_100000279
148 Ga0070680_100001185
149 Ga0070680_100086178
150 Ga0070660_100048003
151 Ga0070660_100073094
152 Ga0070660_100176328
153 Ga0070692_10071422
154 Ga0070659_100000294
155 Ga0070659_100000541
156 Ga0070659_100005650
157 Ga0070659_100059122
158 Ga0070708_100060295
159 Ga0070681_10000009
160 Ga0070681_10000077
161 Ga0070681_10000471
162 Ga0070681_10011834
163 Ga0070681_10072412
164 Ga0070681_10206662
165 Ga0070679_100000107
166 Ga0070679_100000135
167 Ga0070679_100000720
168 Ga0070679_100244942
169 Ga0070679_100246622
170 Ga0070679_100281988
171 Ga0070679_100341610
172 Ga0070684_100039088
173 Ga0070684_100120346
174 Ga0070684_100516249
175 Ga0068855_100195231
176 Ga0105245_10053744
177 Ga0105245_10097796
178 Ga0105245_10302789
179 Ga0105237_10006117
180 Ga0105237_10039376
181 Ga0157371_10017523
182 Ga0157371_10022119
183 Ga0157370_10047629
184 Ga0157369_10001599
185 Ga0157369_10002510
186 Ga0157369_10002584
187 Ga0157369_10014305
188 Ga0157369_10049026
189 Ga0157369_10180279
190 Ga0157369_10346318
191 Ga0157372_10047098
192 Ga0157372_10285348
193 Ga0157372_10373038
194 Ga0197907_11301567
195 Ga0206356_11098761
196 Ga0206349_1571958
197 Ga0206355_1159494
198 Ga0206351_10051165
199 Ga0206354_10063131
200 Ga0206354_10667016
201 Ga0206353_11212436
202 Ga0213873_10013208
203 Ga0213874_10022432
204 Ga0213874_10050050
205 Ga0224712_10005330
206 Ga0224712_10069809
207 Ga0224712_10085683
208 Ga0224712_10104686
209 Ga0207705_10002542
210 Ga0207705_10008780
211 Ga0207707_10000089
212 Ga0207707_10000277
213 Ga0207707_10000458
214 Ga0207707_10070025
215 Ga0207707_10234277
216 Ga0207671_10185717
217 Ga0207660_10000091
218 Ga0207660_10000649
219 Ga0207660_10046996
220 Ga0207660_10069484
221 Ga0207657_10044948
222 Ga0207657_10075660
223 Ga0207657_10252948
224 Ga0207652_10000015
225 Ga0207652_10000118
226 Ga0207652_10000333
227 Ga0207652_10167085
228 Ga0207652_10170728
229 Ga0207652_10378006
230 Ga0207652_10448620
231 Ga0207687_10170680
232 Ga0207690_10000426
233 Ga0207690_10001825
234 Ga0207690_10024792
235 Ga0207690_10027058
236 Ga0207686_10412810
237 Ga0207689_10139426
238 Ga0207661_10030681
239 Ga0207667_10293026
240 Ga0207677_10002090
241 Ga0207677_10074587
242 Ga0207683_10330588
243 Ga0265338_10070917
244 Ga0265325_10017631
245 Ga0265340_10011108
246 Ga0265339_10013106
247 Ga0265316_10138601
248 Ga0265314_10191753
249 Ga0265342_10038935
250 Ga0436360_0306089
251 Ga0436361_0372061
252 Ga0436363_0606704
253 Ga0436363_1175362
254 Ga0436362_0557435
255 Ga0466966_0101212
256 Ga0466966_0118220
257 Ga0466961_0021440
258 Ga0466961_0126950
259 Ga0466961_0128963
260 Ga0466959_0394744
261 Ga0466958_0178151
262 Ga0495669_0002047
263 Ga0495680_0193154
264 Ga0496108_0543098
265 Ga0496109_0088039
266 Ga0496110_0218299
267 Ga0501032_0017109
268 Ga0501034_0179295
269 Ga0501070_0000918
270 Ga0501070_0002657
271 Ga0501070_0003127
272 Ga0501080_0001736
273 Ga0501080_0136640
274 Ga0495601_0053472

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01734

Patatin

Patatin-like phospholipase

47

220

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fya-assembly1.cif.gz_A cubic crystal of the native plpd 0.859 25 291
5fya-assembly1.cif.gz_A cubic crystal of the native plpd 0.8432 25 291
5fqu-assembly1.cif.gz_A orthorhombic crystal structure of of plpd (selenomethionine derivative) 0.8233 25 290
5fya-assembly1.cif.gz_B cubic crystal of the native plpd 0.8227 25 290
5fqu-assembly1.cif.gz_B orthorhombic crystal structure of of plpd (selenomethionine derivative) 0.8193 25 290
ID Description Score Start End Superfamily
af_O69695_801_1044_3.40.1090.10 Alpha Beta;3-Layer(aba) Sandwich;Cytosolic phospholipase A2 catalytic domain;Cytosolic phospholipase A2 catalytic domain 0.7851 26 274 3.40.1090.10
af_P0AFR0_2_250_3.40.1090.10 Alpha Beta;3-Layer(aba) Sandwich;Cytosolic phospholipase A2 catalytic domain;Cytosolic phospholipase A2 catalytic domain 0.7843 26 242 3.40.1090.10
af_Q54JJ8_18_280_3.40.1090.10 Alpha Beta;3-Layer(aba) Sandwich;Cytosolic phospholipase A2 catalytic domain;Cytosolic phospholipase A2 catalytic domain 0.7841 26 255 3.40.1090.10
af_B0G109_19_215_3.40.1090.10 Alpha Beta;3-Layer(aba) Sandwich;Cytosolic phospholipase A2 catalytic domain;Cytosolic phospholipase A2 catalytic domain 0.7752 14 203 3.40.1090.10
af_O69695_801_1044_3.40.1090.10 Alpha Beta;3-Layer(aba) Sandwich;Cytosolic phospholipase A2 catalytic domain;Cytosolic phospholipase A2 catalytic domain 0.7733 26 274 3.40.1090.10
ID Description Score Start End GO Terms
AF-A0A524PKT0-F1-model_v4 Patatin-like phospholipase family protein 0.9564 27 210 GO:0016042
GO:0016787
AF-A0A1M6G4A6-F1-model_v4 NTE family protein 0.9111 23 292 GO:0016042
GO:0016787
AF-A0A1V5RTU4-F1-model_v4 PNPLA domain-containing protein 0.9089 26 283 GO:0016042
GO:0016787
AF-A0A3D0RU52-F1-model_v4 Alpha/beta hydrolase 0.9073 26 292 GO:0016042
GO:0016787
AF-A0A3L7X1L6-F1-model_v4 PNPLA domain-containing protein 0.9068 27 283 GO:0016042
GO:0016787

Map