F169496

General Info

Members Datasets Scaffolds Average Seq Length
137 110 274 363

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100068083|Ga0075431_1000680833
Length 407
Sequence MPVKKRLGRYEASFSMPSGVSRYPTFIALKRIPQLPMAAMLGLRVPMRIISIVGARPQFIKVAVLCRAVASCRSGNRFSHSIIHTGQHYDDGMSDVFFRELGIPAPAYSLGVGSGAHGVQTGEMMKKLEPVLVDENPDWVVLYGDTNSTVAGALVASKLHQPVAHVEAGLRSYNRRLPEELNRIVTDHLSDLLLCPTPVSVENLRKEGLGERALLTGDVMYDAALTFRELAENRGGPLAANWRRGEFALATVHRASNTDDPARLRALLVTLDEIAAEICPVVLPLHPRTDKILAELGWKPKALSIIPPVSYLDMLLLEGRARFILTDSGGVQKEAYFVHAPCITLREDTEWQETLENNCNVLTGVDPIRIKEAAARAAMAGPWTAVYGDGRAGEKILEALSTRQSQN

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
19 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
33 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
34 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
35 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
45 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
46 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
47 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
48 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
53 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
54 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
55 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
56 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
57 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
58 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
59 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
60 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
61 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
62 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
63 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
64 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
65 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
66 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
67 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
77 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
78 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
79 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
83 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
84 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
87 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
88 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
89 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
92 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
93 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
94 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
95 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
96 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
97 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
98 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
99 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
100 2643221572 Leifsonia sp. Root60 Isolate Unclassified
101 2643221613 Oerskovia sp. Root22 Isolate Unclassified
102 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
103 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
104 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
105 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
106 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
107 2919395869 Microbacterium resistens 2980 Isolate Unclassified
108 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
109 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
110 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.24
Metatranscriptomes 0
Isolates 8.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.33
Nodule 1.46
Rhizoplane 3.65
Rhizosphere 70.8
Stem 0
Stem Tuber 0
Unclassified 10.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100068083 3300006847 Unclassified 3674
2 rootL2_10191422 3300003322 Bacteria 3840
3 rootH1_10218617 3300003323 Bacteria 2992
4 Ga0070683_100007814 3300005329 Bacteria 9057
5 Ga0070661_100160042 3300005344 Bacteria 1705
6 Ga0070711_100075853 3300005439 Bacteria 2382
7 Ga0070708_100165622 3300005445 Unclassified 2062
8 Ga0070681_10018853 3300005458 Bacteria 6904
9 Ga0070681_10026476 3300005458 Bacteria 5828
10 Ga0070681_10070732 3300005458 Bacteria 3454
11 Ga0070681_10080476 3300005458 Bacteria 3214
12 Ga0070681_10169392 3300005458 Bacteria 2106
13 Ga0070706_100002193 3300005467 Bacteria 19880
14 Ga0070707_100029651 3300005468 Bacteria 5208
15 Ga0070679_100205914 3300005530 Bacteria 1932
16 Ga0070684_100010030 3300005535 Bacteria 7487
17 Ga0070684_100097485 3300005535 Bacteria 2622
18 Ga0070695_100248005 3300005545 Unclassified 1295
19 Ga0070664_100365145 3300005564 Unclassified 1315
20 Ga0075363_100027676 3300006048 Bacteria 2909
21 Ga0075362_10015632 3300006177 Bacteria 3091
22 Ga0075367_10028557 3300006178 Bacteria 3184
23 Ga0075369_10003361 3300006186 Bacteria 5817
24 Ga0075366_10001435 3300006195 Bacteria 11892
25 Ga0075366_10020063 3300006195 Bacteria 3875
26 Ga0075370_10000064 3300006353 Bacteria 31947
27 Ga0075370_10001457 3300006353 Bacteria 10272
28 Ga0075433_10001888 3300006852 Bacteria 15750
29 Ga0075433_10041223 3300006852 Bacteria 3999
30 Ga0075433_10052056 3300006852 Unclassified 3567
31 Ga0075434_100004380 3300006871 Bacteria 12719
32 Ga0075434_100005593 3300006871 Bacteria 11447
33 Ga0075434_100014396 3300006871 Bacteria 7559
34 Ga0075434_100112906 3300006871 Bacteria 2729
35 Ga0075429_100028743 3300006880 Bacteria 4829
36 Ga0075436_100000412 3300006914 Bacteria 27624
37 Ga0079104_1000016 3300006946 Bacteria 313865
38 Ga0105240_10342285 3300009093 Bacteria 1698
39 Ga0114129_10000150 3300009147 Bacteria 73834
40 Ga0114129_10113556 3300009147 Unclassified 3735
41 Ga0114129_10145646 3300009147 Unclassified 3245
42 Ga0105241_10281364 3300009174 Unclassified 1421
43 Ga0105248_10000201 3300009177 Bacteria 69110
44 Ga0105238_10004467 3300009551 Bacteria 13865
45 Ga0157375_10000798 3300013308 Bacteria 27600
46 Ga0157376_10096240 3300014969 Bacteria 2576
47 Ga0183362_10004 3300015683 Bacteria 569303
48 Ga0209130_1000739 3300025284 Bacteria 28635
49 Ga0209675_1003654 3300025291 Bacteria 7206
50 Ga0209676_1015623 3300025292 Bacteria 2786
51 Ga0207684_10055101 3300025910 Unclassified 3373
52 Ga0207707_10002508 3300025912 Bacteria 16519
53 Ga0207707_10147477 3300025912 Bacteria 2057
54 Ga0207646_10026006 3300025922 Bacteria 5350
55 Ga0207694_10002857 3300025924 Bacteria 13926
56 Ga0207687_10000102 3300025927 Bacteria 62098
57 Ga0207711_10000175 3300025941 Bacteria 69179
58 Ga0207679_10307302 3300025945 Unclassified 1369
59 Ga0209281_1000017 3300027111 Bacteria 583251
60 Ga0316576_10010771 3300031727 Bacteria 5955
61 Ga0316576_10052635 3300031727 Bacteria 2965
62 Ga0316576_10082057 3300031727 Bacteria 2393
63 Ga0316578_10012328 3300031728 Bacteria 4505
64 Ga0307405_10144103 3300031731 Bacteria 1666
65 Ga0316577_10007839 3300031733 Bacteria 5703
66 Ga0307406_10001162 3300031901 Bacteria 14729
67 Ga0307409_100119287 3300031995 Bacteria 2230
68 Ga0307414_10035202 3300032004 Unclassified 3330
69 Ga0307411_10140093 3300032005 Unclassified 1782
70 Ga0316574_0004982 3300035398 Bacteria 7042
71 Ga0436362_0745961 3300039453 Bacteria 2014
72 Ga0466960_0004853 3300044901 Bacteria 5286
73 Ga0495632_0016347 3300046519 Bacteria 4131
74 Ga0495625_0100435 3300046660 Bacteria 1989
75 Ga0495649_0003047 3300046694 Bacteria 11496
76 Ga0495687_000615 3300047443 Bacteria 41337
77 Ga0496105_0068038 3300048908 Bacteria 2941
78 Ga0496108_0044094 3300048911 Bacteria 3724
79 Ga0496109_0104068 3300048912 Bacteria 2635
80 Ga0496112_0271056 3300048915 Bacteria 1646
81 Ga0496114_0035536 3300048917 Bacteria 4115
82 Ga0496122_0080816 3300048925 Bacteria 2265
83 Ga0496126_0017268 3300048929 Bacteria 7190
84 Ga0501031_0000790 3300049568 Bacteria 19048
85 Ga0501032_0000808 3300049569 Bacteria 25474
86 Ga0501032_0023153 3300049569 Bacteria 4298
87 Ga0501033_0000011 3300049570 Bacteria 259130
88 Ga0501034_0000171 3300049571 Bacteria 120801
89 Ga0501036_0019923 3300049572 Bacteria 5631
90 Ga0501037_0002407 3300049573 Bacteria 13522
91 Ga0501038_0003841 3300049574 Bacteria 13972
92 Ga0501039_0068177 3300049575 Bacteria 2762
93 Ga0501048_0183093 3300049582 Bacteria 1485
94 Ga0501069_0007790 3300049585 Bacteria 5623
95 Ga0501070_0097790 3300049586 Bacteria 2428
96 Ga0501072_0027712 3300049588 Bacteria 4419
97 Ga0501076_0027959 3300049592 Bacteria 4375
98 Ga0501035_0002620 3300049822 Bacteria 17541
99 Ga0501044_0000177 3300049823 Bacteria 78892
100 Ga0501045_0001288 3300049824 Bacteria 16628
101 nmdc:mga03683_32518_c1 3300050489 Bacteria 2099
102 nmdc:mga03n38_15974_c1 3300050490 Bacteria 2911
103 nmdc:mga00v17_6447_c1 3300050491 Bacteria 6226
104 nmdc:mga0k408_11682_c1 3300050493 Bacteria 4787
105 nmdc:mga0k408_2238_c1 3300050493 Bacteria 10344
106 nmdc:mga07m45_1742_c1 3300050496 Bacteria 10017
107 nmdc:mga07m45_62245_c1 3300050496 Bacteria 2115
108 nmdc:mga05p37_157485_c1 3300050507 Unclassified 2775
109 nmdc:mga05p37_222246_c1 3300050507 Unclassified 2279
110 nmdc:mga05p37_298_c1 3300050507 Bacteria 51949
111 nmdc:mga05p37_51902_c1 3300050507 Bacteria 5042
112 nmdc:mga06r32_29005_c1 3300050510 Bacteria 5182
113 nmdc:mga0n895_12121_c1 3300050512 Bacteria 7715
114 nmdc:mga0n895_98515_c1 3300050512 Bacteria 2930
115 nmdc:mga0rr50_27292_c1 3300050513 Bacteria 3995
116 nmdc:mga08x19_491_c1 3300050514 Bacteria 26311
117 nmdc:mga0a205_32535_c1 3300050515 Bacteria 5000
118 nmdc:mga0a205_36093_c1 3300050515 Bacteria 4749
119 Ga0500607_000297 3300053121 Bacteria 47120
120 Ga0500608_017110 3300053122 Unclassified 3288
121 Ga0500658_0000949 3300053134 Bacteria 11845
122 Ga0501084_0047761 3300054114 Bacteria 3585
123 Ga0501082_0280002 3300060353 Bacteria 1452
124 Ga0530510_0029425 3300061734 Bacteria 3942
125 Ga0530510_0078193 3300061734 Bacteria 2405
126 2643874598 2643221572 Bacteria 3614809
127 2644083650 2643221613 Bacteria 4622396
128 2644180957 2643221632 Bacteria 3406696
129 2644381654 2643221669 Bacteria 3611286
130 2747952621 2747842429 Bacteria 3914386
131 2839989550 2839986021 Bacteria 3685650
132 2895663386 2895660088 Bacteria 3782833
133 2919396791 2919395869 Bacteria 3704152
134 2945970819 2945968032 Bacteria 4111363
135 2945971272 2945968032 Bacteria 4111363
136 2946081466 2946080515 Bacteria 4310960
137 8004185949 8004182704 Bacteria 3391155
138 Ga0075431_100068083
139 rootL2_10191422
140 rootH1_10218617
141 Ga0070683_100007814
142 Ga0070661_100160042
143 Ga0070711_100075853
144 Ga0070708_100165622
145 Ga0070681_10018853
146 Ga0070681_10026476
147 Ga0070681_10070732
148 Ga0070681_10080476
149 Ga0070681_10169392
150 Ga0070706_100002193
151 Ga0070707_100029651
152 Ga0070679_100205914
153 Ga0070684_100010030
154 Ga0070684_100097485
155 Ga0070695_100248005
156 Ga0070664_100365145
157 Ga0075363_100027676
158 Ga0075362_10015632
159 Ga0075367_10028557
160 Ga0075369_10003361
161 Ga0075366_10001435
162 Ga0075366_10020063
163 Ga0075370_10000064
164 Ga0075370_10001457
165 Ga0075433_10001888
166 Ga0075433_10041223
167 Ga0075433_10052056
168 Ga0075434_100004380
169 Ga0075434_100005593
170 Ga0075434_100014396
171 Ga0075434_100112906
172 Ga0075429_100028743
173 Ga0075436_100000412
174 Ga0079104_1000016
175 Ga0105240_10342285
176 Ga0114129_10000150
177 Ga0114129_10113556
178 Ga0114129_10145646
179 Ga0105241_10281364
180 Ga0105248_10000201
181 Ga0105238_10004467
182 Ga0157375_10000798
183 Ga0157376_10096240
184 Ga0183362_10004
185 Ga0209130_1000739
186 Ga0209675_1003654
187 Ga0209676_1015623
188 Ga0207684_10055101
189 Ga0207707_10002508
190 Ga0207707_10147477
191 Ga0207646_10026006
192 Ga0207694_10002857
193 Ga0207687_10000102
194 Ga0207711_10000175
195 Ga0207679_10307302
196 Ga0209281_1000017
197 Ga0316576_10010771
198 Ga0316576_10052635
199 Ga0316576_10082057
200 Ga0316578_10012328
201 Ga0307405_10144103
202 Ga0316577_10007839
203 Ga0307406_10001162
204 Ga0307409_100119287
205 Ga0307414_10035202
206 Ga0307411_10140093
207 Ga0316574_0004982
208 Ga0436362_0745961
209 Ga0466960_0004853
210 Ga0495632_0016347
211 Ga0495625_0100435
212 Ga0495649_0003047
213 Ga0495687_000615
214 Ga0496105_0068038
215 Ga0496108_0044094
216 Ga0496109_0104068
217 Ga0496112_0271056
218 Ga0496114_0035536
219 Ga0496122_0080816
220 Ga0496126_0017268
221 Ga0501031_0000790
222 Ga0501032_0000808
223 Ga0501032_0023153
224 Ga0501033_0000011
225 Ga0501034_0000171
226 Ga0501036_0019923
227 Ga0501037_0002407
228 Ga0501038_0003841
229 Ga0501039_0068177
230 Ga0501048_0183093
231 Ga0501069_0007790
232 Ga0501070_0097790
233 Ga0501072_0027712
234 Ga0501076_0027959
235 Ga0501035_0002620
236 Ga0501044_0000177
237 Ga0501045_0001288
238 nmdc:mga03683_32518_c1
239 nmdc:mga03n38_15974_c1
240 nmdc:mga00v17_6447_c1
241 nmdc:mga0k408_11682_c1
242 nmdc:mga0k408_2238_c1
243 nmdc:mga07m45_1742_c1
244 nmdc:mga07m45_62245_c1
245 nmdc:mga05p37_157485_c1
246 nmdc:mga05p37_222246_c1
247 nmdc:mga05p37_298_c1
248 nmdc:mga05p37_51902_c1
249 nmdc:mga06r32_29005_c1
250 nmdc:mga0n895_12121_c1
251 nmdc:mga0n895_98515_c1
252 nmdc:mga0rr50_27292_c1
253 nmdc:mga08x19_491_c1
254 nmdc:mga0a205_32535_c1
255 nmdc:mga0a205_36093_c1
256 Ga0500607_000297
257 Ga0500608_017110
258 Ga0500658_0000949
259 Ga0501084_0047761
260 Ga0501082_0280002
261 Ga0530510_0029425
262 Ga0530510_0078193
263 2643874598
264 2644083650
265 2644180957
266 2644381654
267 2747952621
268 2839989550
269 2895663386
270 2919396791
271 2945970819
272 2945971272
273 2946081466
274 8004185949

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

70

401

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4nes-assembly1.cif.gz_A-2 crystal structure of methanocaldococcus jannaschii udp-glcnac 2-epimerase in complex with udp-glcnac and udp 0.8982 1 340
8sye-assembly1.cif.gz_A x-ray crystal structure of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27, d98n variant in the presence of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid and udp at ph 6 0.8818 1 341
8sy0-assembly1.cif.gz_A x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 9 0.878 1 339
4nes-assembly1.cif.gz_A-2 crystal structure of methanocaldococcus jannaschii udp-glcnac 2-epimerase in complex with udp-glcnac and udp 0.8707 1 340
4fkz-assembly1.cif.gz_B crystal structure of bacillus subtilis udp-glcnac 2-epimerase in complex with udp-glcnac and udp 0.8654 1 344
ID Description Score Start End Superfamily
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9439 3 167 3.40.50.2000
5enzB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.919 2 163 3.40.50.2000
4hwgA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9123 1 164 3.40.50.2000
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8996 3 167 3.40.50.2000
af_Q58899_3_336_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8943 4 310 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A7K4DCU3-F1-model_v4 UDP-N-acetyl glucosamine 2-epimerase 0.9812 1 146 GO:0008761
AF-A0A7K4DCU3-F1-model_v4 UDP-N-acetyl glucosamine 2-epimerase 0.9743 1 146 GO:0008761
AF-A0A151EI50-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase domain-containing protein 0.9712 1 104 GO:0008761
AF-A0A661S8D5-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.968 1 107 GO:0008761
AF-A0A6J4Y436-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (EC) (EC 5.1.3.14) 0.965 2 107 GO:0008761

Map