F167965

General Info

Members Datasets Scaffolds Average Seq Length
136 109 124 349

Family's Representative Sequence

Representative Sequence 3300049593|Ga0501077_0003513|Ga0501077_0003513_4879_5997
Length 372
Sequence MENKSRCLDIAGKRVGPGEAVYMVAEMSANHGQRFDQAVAILKAAKAAGADAIKLQTYTPDTLTINSNKKYFQVDGGTLWDGRSLYDLYGEAYTPWEWQPKLKKIADDLELDLFSTPFDHTAVDFLEEMGVMVYKIASFEVVDLPLIRRVARTGKPVIMSTGMATLSEIDEAVRVFEAEGGRQLALLKCTSAYPAPPEDMNLLTIPHLAEAFGLPVGLSDHTTGVAVSVVAVALGACIVEKHFTLSRQTSGPDSAFSLEPHEFKELVKAIRIAEKARGRVHYGVSREEAKSSAFRRSLFVVKDVKAGESFTAENVRSIRPGHGLHTRHLDEILGRTASRNIQRGTPLAWELVGTRDATTRNERERNQFRASG

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
3 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
4 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
5 2932828146 Bradyrhizobium sp. S3.9.2 Isolate Nodule
6 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
7 2935837841 Bradyrhizobium sp. RT4b Isolate Nodule
8 3005718088 Bradyrhizobium sp. CCBAU 53338 Isolate Nodule
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
46 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
47 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
60 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
61 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
67 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
68 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
69 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
73 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
74 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
75 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
76 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
77 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
78 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
79 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
80 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
81 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
92 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
95 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
103 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
104 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
105 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
106 8016511872 Bradyrhizobium sp. S3.14.4 Isolate Nodule
107 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
108 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
109 8017057580 Bradyrhizobium sp. S3.7.6 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 90.44
Metatranscriptomes 0.74
Isolates 8.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.47
Nodule 7.35
Rhizoplane 6.62
Rhizosphere 80.88
Stem 0
Stem Tuber 0
Unclassified 3.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10005516 3300005327 Bacteria 10273
2 Ga0070677_10010191 3300005333 Bacteria 3208
3 Ga0070659_100127279 3300005366 Bacteria 2067
4 Ga0070709_10149303 3300005434 Bacteria 1614
5 Ga0070714_100338722 3300005435 Bacteria 1410
6 Ga0070662_100085498 3300005457 Bacteria 2357
7 Ga0070662_100098642 3300005457 Bacteria 2207
8 Ga0070679_100053523 3300005530 Bacteria 4018
9 Ga0070686_100084901 3300005544 Unclassified 2105
10 Ga0070665_100000410 3300005548 Bacteria 62835
11 Ga0068855_100385678 3300005563 Unclassified 1538
12 Ga0068856_100002482 3300005614 Bacteria 18981
13 Ga0068856_100012773 3300005614 Bacteria 8131
14 Ga0068852_100113659 3300005616 Bacteria 2466
15 Ga0068858_100096602 3300005842 Unclassified 2753
16 Ga0097621_100012735 3300006237 Bacteria 6248
17 Ga0068871_100022064 3300006358 Bacteria 4905
18 Ga0079104_1000391 3300006946 Bacteria 50839
19 Ga0079104_1005812 3300006946 Bacteria 4829
20 Ga0114129_10028324 3300009147 Unclassified 7937
21 Ga0114129_10071590 3300009147 Bacteria 4835
22 Ga0157373_10090015 3300013100 Bacteria 2161
23 Ga0157371_10091617 3300013102 Bacteria 2153
24 Ga0157369_10210614 3300013105 Bacteria 2037
25 Ga0157369_10252240 3300013105 Unclassified 1841
26 Ga0157374_10006905 3300013296 Bacteria 9653
27 Ga0157374_10089841 3300013296 Unclassified 2927
28 Ga0157374_10131516 3300013296 Bacteria 2422
29 Ga0163162_10377881 3300013306 Bacteria 1550
30 Ga0157379_10241426 3300014968 Bacteria 1639
31 Ga0207680_10007440 3300025903 Unclassified 5338
32 Ga0207699_10030822 3300025906 Bacteria 3005
33 Ga0207705_10004754 3300025909 Bacteria 10228
34 Ga0207657_10103615 3300025919 Bacteria 2358
35 Ga0207652_10036415 3300025921 Bacteria 4160
36 Ga0207664_10299643 3300025929 Bacteria 1414
37 Ga0207690_10083409 3300025932 Bacteria 2238
38 Ga0207706_10204321 3300025933 Bacteria 1732
39 Ga0207702_10106161 3300026078 Bacteria 2488
40 Ga0207698_10005917 3300026142 Bacteria 7601
41 Ga0209371_1002763 3300027312 Bacteria 9399
42 Ga0268266_10000294 3300028379 Bacteria 81573
43 Ga0265338_10015688 3300028800 Bacteria 8301
44 Ga0265338_10024588 3300028800 Bacteria 6148
45 Ga0265338_10125056 3300028800 Bacteria 2042
46 Ga0268256_1002467 3300030500 Bacteria 9399
47 Ga0265770_1002537 3300030878 Bacteria 2478
48 Ga0265325_10044945 3300031241 Unclassified 2297
49 Ga0265339_10008057 3300031249 Bacteria 6734
50 Ga0265316_10235958 3300031344 Bacteria 1346
51 Ga0307408_100025688 3300031548 Bacteria 4036
52 Ga0265313_10000280 3300031595 Bacteria 55923
53 Ga0316576_10065534 3300031727 Bacteria 2670
54 Ga0307410_10183575 3300031852 Bacteria 1585
55 Ga0307407_10058538 3300031903 Bacteria 2240
56 Ga0307409_100039097 3300031995 Bacteria 3517
57 Ga0307416_100214631 3300032002 Bacteria 1839
58 Ga0307414_10016687 3300032004 Bacteria 4472
59 Ga0307414_10064955 3300032004 Bacteria 2601
60 Ga0307415_100010827 3300032126 Bacteria 5184
61 Ga0373937_0419472 3300036401 Unclassified 1270
62 Ga0316582_0117191 3300036647 Bacteria 1779
63 Ga0316584_0041180 3300036712 Bacteria 3444
64 Ga0395899_0054865 3300037312 Bacteria 2948
65 Ga0395900_0017114 3300037418 Bacteria 7401
66 Ga0395900_0224658 3300037418 Bacteria 1891
67 Ga0395898_0128689 3300037466 Bacteria 2425
68 Ga0395905_0009645 3300037471 Bacteria 9422
69 Ga0316581_0019889 3300037588 Bacteria 1962
70 Ga0400490_32739 3300038726 Bacteria 3877
71 Ga0400490_41317 3300038726 Bacteria 23150
72 Ga0400489_43072 3300039093 Bacteria 3639
73 Ga0439445_0011470 3300042004 Bacteria 2115
74 Ga0453684_0000045 3300044712 Bacteria 582917
75 Ga0453684_0005036 3300044712 Archaea 26800
76 Ga0453684_0026438 3300044712 Unclassified 8380
77 Ga0453684_0188571 3300044712 Unclassified 2414
78 Ga0451576_0023133 3300045051 Bacteria 6733
79 Ga0451576_0032898 3300045051 Bacteria 5514
80 Ga0495679_000925 3300047446 Bacteria 18323
81 Ga0496106_0017845 3300048909 Bacteria 5248
82 Ga0496108_0003350 3300048911 Bacteria 12874
83 Ga0496109_0018366 3300048912 Bacteria 6144
84 Ga0496109_0299668 3300048912 Bacteria 1516
85 Ga0496110_0045640 3300048913 Bacteria 3831
86 Ga0496112_0010937 3300048915 Bacteria 8263
87 Ga0496113_0052005 3300048916 Bacteria 3058
88 Ga0496114_0239062 3300048917 Bacteria 1597
89 Ga0496115_0197154 3300048918 Bacteria 1664
90 Ga0501031_0010743 3300049568 Bacteria 5965
91 Ga0501032_0016244 3300049569 Bacteria 5236
92 Ga0501032_0020905 3300049569 Bacteria 4554
93 Ga0501033_0019839 3300049570 Bacteria 5081
94 Ga0501034_0027816 3300049571 Bacteria 5750
95 Ga0501036_0088556 3300049572 Bacteria 2616
96 Ga0501037_0040319 3300049573 Bacteria 3436
97 Ga0501038_0000257 3300049574 Bacteria 44845
98 Ga0501038_0016280 3300049574 Bacteria 6741
99 Ga0501039_0173093 3300049575 Bacteria 1697
100 Ga0501040_0011190 3300049576 Bacteria 5869
101 Ga0501046_0049394 3300049580 Bacteria 3327
102 Ga0501046_0141470 3300049580 Bacteria 1820
103 Ga0501067_0005697 3300049583 Bacteria 6919
104 Ga0501074_0009585 3300049590 Bacteria 7030
105 Ga0501077_0003513 3300049593 Bacteria 9409
106 Ga0501249_001198 3300049679 Bacteria 5447
107 Ga0501081_0126980 3300049743 Bacteria 1820
108 Ga0501083_0025713 3300049744 Bacteria 4075
109 Ga0501083_0037909 3300049744 Bacteria 3279
110 Ga0501035_0001174 3300049822 Bacteria 27293
111 Ga0501035_0226373 3300049822 Bacteria 1595
112 Ga0501044_0014337 3300049823 Bacteria 8557
113 Ga0501044_0074946 3300049823 Bacteria 3436
114 Ga0501044_0102511 3300049823 Bacteria 2877
115 Ga0501044_0144471 3300049823 Unclassified 2366
116 Ga0501044_0284439 3300049823 Unclassified 1586
117 Ga0501044_0496903 3300049823 Bacteria 1121
118 Ga0501045_0040194 3300049824 Bacteria 3404
119 nmdc:mga03683_78054_c1 3300050489 Bacteria 1425
120 nmdc:mga05p37_18266_c1 3300050507 Bacteria 8471
121 nmdc:mga0n895_26664_c1 3300050512 Bacteria 5477
122 Ga0500618_000099 3300053125 Bacteria 70839
123 Ga0501084_0052320 3300054114 Bacteria 3417
124 Ga0501082_0354953 3300060353 Bacteria 1278

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025906 Ga0207699_10030822 Ga0207699_100308222 280
2 3300036712 Ga0316584_0041180 Ga0316584_0041180_48_929 290
3 3300049572 Ga0501036_0088556 Ga0501036_0088556_10_882 290
4 3300049823 Ga0501044_0496903 Ga0501044_0496903_239_1111 290
5 iso_pu_bacteria 8016603502 8016612562 292
6 3300036647 Ga0316582_0117191 Ga0316582_0117191_765_1766 333
7 3300037312 Ga0395899_0054865 Ga0395899_0054865_1861_2907 334
8 3300037418 Ga0395900_0017114 Ga0395900_0017114_267_1313 334
9 3300037466 Ga0395898_0128689 Ga0395898_0128689_1085_2131 334
10 3300037471 Ga0395905_0009645 Ga0395905_0009645_5676_6722 334
11 3300037418 Ga0395900_0224658 Ga0395900_0224658_667_1680 335
12 3300048912 Ga0496109_0299668 Ga0496109_0299668_349_1389 342
13 3300045051 Ga0451576_0023133 Ga0451576_0023133_5196_6245 344
14 iso_pu_bacteria 2511231026 2511383583 344
15 iso_pu_bacteria 2521172590 2521560358 344
16 iso_pu_bacteria 2919534386 2919536977 344
17 3300005530 Ga0070679_100053523 Ga0070679_1000535232 346
18 3300005544 Ga0070686_100084901 Ga0070686_1000849012 346
19 3300014968 Ga0157379_10241426 Ga0157379_102414261 346
20 3300025921 Ga0207652_10036415 Ga0207652_100364152 346
21 3300027312 Ga0209371_1002763 Ga0209371_100276310 346
22 3300030500 Ga0268256_1002467 Ga0268256_10024674 346
23 3300031344 Ga0265316_10235958 Ga0265316_102359582 346
24 3300044712 Ga0453684_0026438 Ga0453684_0026438_3561_4613 346
25 3300049823 Ga0501044_0144471 Ga0501044_0144471_103_1158 346
26 3300053125 Ga0500618_000099 Ga0500618_000099_52583_53644 346
27 3300049679 Ga0501249_001198 Ga0501249_001198_962_2008 347
28 iso_pu_bacteria 2885409591 2885412401 347
29 iso_pu_bacteria 2932828146 2932836857 347
30 iso_pu_bacteria 2935769743 2935774391 347
31 iso_pu_bacteria 2935837841 2935845077 347
32 iso_pu_bacteria 3005718088 3005720534 347
33 iso_pu_bacteria 8016511872 8016515520 347
34 iso_pu_bacteria 8016613128 8016621252 347
35 iso_pu_bacteria 8017057580 8017060966 347
36 3300009147 Ga0114129_10028324 Ga0114129_100283248 348
37 3300032004 Ga0307414_10064955 Ga0307414_100649552 348
38 3300038726 Ga0400490_32739 Ga0400490_32739_298_1344 348
39 3300047446 Ga0495679_000925 Ga0495679_000925_11738_12787 348
40 3300005366 Ga0070659_100127279 Ga0070659_1001272792 349
41 3300005434 Ga0070709_10149303 Ga0070709_101493031 349
42 3300005457 Ga0070662_100085498 Ga0070662_1000854982 349
43 3300005614 Ga0068856_100002482 Ga0068856_10000248214 349
44 3300005616 Ga0068852_100113659 Ga0068852_1001136592 349
45 3300006946 Ga0079104_1000391 Ga0079104_100039111 349
46 3300006946 Ga0079104_1005812 Ga0079104_10058123 349
47 3300013105 Ga0157369_10252240 Ga0157369_102522402 349
48 3300025903 Ga0207680_10007440 Ga0207680_100074404 349
49 3300025919 Ga0207657_10103615 Ga0207657_101036151 349
50 3300025932 Ga0207690_10083409 Ga0207690_100834092 349
51 3300026142 Ga0207698_10005917 Ga0207698_100059174 349
52 3300028800 Ga0265338_10015688 Ga0265338_100156882 349
53 3300028800 Ga0265338_10125056 Ga0265338_101250562 349
54 3300030878 Ga0265770_1002537 Ga0265770_10025372 349
55 3300031249 Ga0265339_10008057 Ga0265339_100080572 349
56 3300031548 Ga0307408_100025688 Ga0307408_1000256882 349
57 3300031595 Ga0265313_10000280 Ga0265313_1000028033 349
58 3300031727 Ga0316576_10065534 Ga0316576_100655342 349
59 3300031852 Ga0307410_10183575 Ga0307410_101835752 349
60 3300031903 Ga0307407_10058538 Ga0307407_100585382 349
61 3300031995 Ga0307409_100039097 Ga0307409_1000390973 349
62 3300032002 Ga0307416_100214631 Ga0307416_1002146312 349
63 3300032004 Ga0307414_10016687 Ga0307414_100166872 349
64 3300032126 Ga0307415_100010827 Ga0307415_1000108273 349
65 3300038726 Ga0400490_41317 Ga0400490_41317_12261_13325 349
66 3300044712 Ga0453684_0000045 Ga0453684_0000045_221116_222168 349
67 3300045051 Ga0451576_0032898 Ga0451576_0032898_4138_5187 349
68 3300048909 Ga0496106_0017845 Ga0496106_0017845_2982_4034 349
69 3300048911 Ga0496108_0003350 Ga0496108_0003350_203_1255 349
70 3300048912 Ga0496109_0018366 Ga0496109_0018366_2237_3289 349
71 3300048913 Ga0496110_0045640 Ga0496110_0045640_2609_3661 349
72 3300048915 Ga0496112_0010937 Ga0496112_0010937_5837_6889 349
73 3300048916 Ga0496113_0052005 Ga0496113_0052005_354_1406 349
74 3300048917 Ga0496114_0239062 Ga0496114_0239062_235_1287 349
75 3300048918 Ga0496115_0197154 Ga0496115_0197154_152_1204 349
76 3300049568 Ga0501031_0010743 Ga0501031_0010743_1886_2938 349
77 3300049569 Ga0501032_0016244 Ga0501032_0016244_3462_4517 349
78 3300049569 Ga0501032_0020905 Ga0501032_0020905_1854_2906 349
79 3300049570 Ga0501033_0019839 Ga0501033_0019839_2260_3315 349
80 3300049571 Ga0501034_0027816 Ga0501034_0027816_3718_4770 349
81 3300049573 Ga0501037_0040319 Ga0501037_0040319_2017_3072 349
82 3300049574 Ga0501038_0000257 Ga0501038_0000257_36922_37974 349
83 3300049574 Ga0501038_0016280 Ga0501038_0016280_56_1108 349
84 3300049575 Ga0501039_0173093 Ga0501039_0173093_224_1276 349
85 3300049576 Ga0501040_0011190 Ga0501040_0011190_4462_5517 349
86 3300049580 Ga0501046_0049394 Ga0501046_0049394_2254_3306 349
87 3300049580 Ga0501046_0141470 Ga0501046_0141470_80_1135 349
88 3300049583 Ga0501067_0005697 Ga0501067_0005697_1358_2413 349
89 3300049590 Ga0501074_0009585 Ga0501074_0009585_4511_5566 349
90 3300049744 Ga0501083_0037909 Ga0501083_0037909_717_1772 349
91 3300049822 Ga0501035_0001174 Ga0501035_0001174_7200_8252 349
92 3300049822 Ga0501035_0226373 Ga0501035_0226373_488_1540 349
93 3300049823 Ga0501044_0014337 Ga0501044_0014337_4140_5192 349
94 3300049823 Ga0501044_0074946 Ga0501044_0074946_365_1420 349
95 3300049823 Ga0501044_0102511 Ga0501044_0102511_1723_2775 349
96 3300049824 Ga0501045_0040194 Ga0501045_0040194_887_1942 349
97 3300050489 nmdc:mga03683_78054_c1 nmdc:mga03683_78054_c1_285_1340 349
98 3300054114 Ga0501084_0052320 Ga0501084_0052320_1888_2943 349
99 3300060353 Ga0501082_0354953 Ga0501082_0354953_104_1159 349
100 3300005327 Ga0070658_10005516 Ga0070658_100055164 350
101 3300005333 Ga0070677_10010191 Ga0070677_100101912 350
102 3300005435 Ga0070714_100338722 Ga0070714_1003387222 350
103 3300005457 Ga0070662_100098642 Ga0070662_1000986422 350
104 3300005548 Ga0070665_100000410 Ga0070665_10000041017 350
105 3300005563 Ga0068855_100385678 Ga0068855_1003856781 350
106 3300005614 Ga0068856_100012773 Ga0068856_1000127735 350
107 3300005842 Ga0068858_100096602 Ga0068858_1000966022 350
108 3300006237 Ga0097621_100012735 Ga0097621_1000127354 350
109 3300006358 Ga0068871_100022064 Ga0068871_1000220646 350
110 3300009147 Ga0114129_10071590 Ga0114129_100715904 350
111 3300013100 Ga0157373_10090015 Ga0157373_100900152 350
112 3300013102 Ga0157371_10091617 Ga0157371_100916172 350
113 3300013105 Ga0157369_10210614 Ga0157369_102106142 350
114 3300013296 Ga0157374_10006905 Ga0157374_100069059 350
115 3300013296 Ga0157374_10089841 Ga0157374_100898411 350
116 3300013296 Ga0157374_10131516 Ga0157374_101315162 350
117 3300013306 Ga0163162_10377881 Ga0163162_103778812 350
118 3300025909 Ga0207705_10004754 Ga0207705_100047547 350
119 3300025929 Ga0207664_10299643 Ga0207664_102996432 350
120 3300025933 Ga0207706_10204321 Ga0207706_102043212 350
121 3300026078 Ga0207702_10106161 Ga0207702_101061611 350
122 3300028379 Ga0268266_10000294 Ga0268266_1000029467 350
123 3300028800 Ga0265338_10024588 Ga0265338_100245884 350
124 3300031241 Ga0265325_10044945 Ga0265325_100449452 350
125 3300036401 Ga0373937_0419472 Ga0373937_0419472_38_1117 350
126 3300037588 Ga0316581_0019889 Ga0316581_0019889_235_1335 350
127 3300039093 Ga0400489_43072 Ga0400489_43072_1570_2622 350
128 3300042004 Ga0439445_0011470 Ga0439445_0011470_866_1927 350
129 3300044712 Ga0453684_0005036 Ga0453684_0005036_8419_9489 350
130 3300044712 Ga0453684_0188571 Ga0453684_0188571_291_1346 350
131 3300049593 Ga0501077_0003513 Ga0501077_0003513_4879_5997 350
132 3300049743 Ga0501081_0126980 Ga0501081_0126980_705_1763 350
133 3300049744 Ga0501083_0025713 Ga0501083_0025713_650_1705 350
134 3300049823 Ga0501044_0284439 Ga0501044_0284439_281_1333 350
135 3300050507 nmdc:mga05p37_18266_c1 nmdc:mga05p37_18266_c1_5159_6232 350
136 3300050512 nmdc:mga0n895_26664_c1 nmdc:mga0n895_26664_c1_3679_4749 350

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03102

NeuB

NeuB family

41

282

0.98

PF08666

SAF

SAF domain

295

352

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ncs-assembly1.cif.gz_B crystal structure of n-acetylneuraminic acid (sialic acid) synthetase from leptospira borgpetersenii serovar hardjo-bovis in complex with citrate 0.9376 1 289
4ipi-assembly1.cif.gz_A-2 crystal structure of r314a n-acetyl neuraminic acid synthase from neiserria meningitidis with malate bound 0.915 1 350
4ipj-assembly1.cif.gz_A-2 crystal structure of r314k n-acetyl neuraminic acid synthase from neiserria meningitidis with malate bound 0.914 1 350
2wqp-assembly1.cif.gz_A-2 crystal structure of sialic acid synthase neub-inhibitor complex 0.9138 1 350
2wqp-assembly1.cif.gz_A-2 crystal structure of sialic acid synthase neub-inhibitor complex 0.9088 1 350
ID Description Score Start End Superfamily
af_Q58465_3_262_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9494 5 276 3.20.20.70
af_Q58465_3_262_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.935 5 276 3.20.20.70
2wqpA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9263 6 278 3.20.20.70
2wqpA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9129 6 278 3.20.20.70
1wvoA00 Alpha Beta;Alpha-Beta Complex;Type Iii Antifreeze Protein Isoform Hplc 12;Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.9045 294 350 3.90.1210.10
ID Description Score Start End GO Terms
AF-A0A4Y7U3F0-F1-model_v4 Pseudaminic acid synthase 0.9923 107 196 GO:0016051
GO:0047444
GO:0070085
AF-A0A2U3B8J1-F1-model_v4 Pseudaminic acid synthase 0.9872 5 350 GO:0016051
GO:0047444
GO:0070085
AF-A0A3C1AV52-F1-model_v4 deleted 0.9864 14 260
AF-A0A5N9CC24-F1-model_v4 Pseudaminic acid synthase (EC 2.5.1.97) 0.9856 1 350 GO:0016051
GO:0047444
GO:0070085
AF-V1E5B7-F1-model_v4 deleted 0.9849 1 350

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pLDDT pTM Quality
95.78 0.89 High
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Predicted Structure (AlphaFold2)

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