F167342

General Info

Members Datasets Scaffolds Average Seq Length
136 39 272 285

Family's Representative Sequence

Representative Sequence 3300039093|Ga0400489_71369|Ga0400489_71369_1942_2904
Length 320
Sequence VSYAKVGRKAFHTGRTDSIFALAGVNLNLRRPTLYEILEKQVLSDIVKLMVVKAPQVARKAKAGQFVIVRIDESGERIPLTIADYDREAETITLIFQEVGKSTMQMGTLERGDGFLTLMGPLGHATEIENFGTVVCIGGGVGIAPIFPIARALKEAGNTVISIIGARTRDLLFWEDRMEAISDELIICTDDCSYGRGGVVTEPLKELLDARAEEIVKIWAIGPAIMMKFVTLTTQSYNVPTIVSLNTVMVDGTGMCGGCRVVLDDGAQFACVDGPEFDGHKVNWDILLSRLQFYQEQEQAALERWKQECALEDEVTEERV

Samples

Sample ID Description Type Environment
1 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
2 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
3 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
4 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
5 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
6 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
7 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
8 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
9 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
10 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
11 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
12 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
13 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
16 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
17 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
18 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
19 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
20 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
21 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
22 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
23 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
24 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
25 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
26 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
27 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
28 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
29 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
30 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
31 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
32 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
33 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
34 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
35 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
36 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
37 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
38 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
39 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.06
Metatranscriptomes 2.21
Isolates 0.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 90.44
Stem 0
Stem Tuber 0
Unclassified 10.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400489_71369 3300039093 Unclassified 4951
2 Ga0265323_10018270 3300028653 Bacteria 2715
3 Ga0265323_10070989 3300028653 Bacteria 1190
4 Ga0265327_10011824 3300031251 Bacteria 5964
5 Ga0265316_10000008 3300031344 Bacteria 261948
6 Ga0316575_10043917 3300031665 Bacteria 1772
7 Ga0316579_10001918 3300031691 Bacteria 7738
8 Ga0316579_10002830 3300031691 Bacteria 6638
9 Ga0316579_10006631 3300031691 Bacteria 4733
10 Ga0316579_10009956 3300031691 Bacteria 4009
11 Ga0316579_10010085 3300031691 Bacteria 3986
12 Ga0316579_10016749 3300031691 Bacteria 3206
13 Ga0316579_10020195 3300031691 Bacteria 2951
14 Ga0316579_10026621 3300031691 Bacteria 2620
15 Ga0316579_10028657 3300031691 Bacteria 2536
16 Ga0316579_10113423 3300031691 Bacteria 1301
17 Ga0316579_10155421 3300031691 Bacteria 1104
18 Ga0265342_10037250 3300031712 Bacteria 2967
19 Ga0316576_10002297 3300031727 Bacteria 10844
20 Ga0316576_10009197 3300031727 Bacteria 6366
21 Ga0316576_10035078 3300031727 Bacteria 3579
22 Ga0316576_10035915 3300031727 Bacteria 3542
23 Ga0316576_10037255 3300031727 Bacteria 3481
24 Ga0316576_10106444 3300031727 Bacteria 2100
25 Ga0316578_10011224 3300031728 Bacteria 4678
26 Ga0316578_10014889 3300031728 Bacteria 4169
27 Ga0316578_10026231 3300031728 Bacteria 3284
28 Ga0316577_10000051 3300031733 Bacteria 27441
29 Ga0316577_10003533 3300031733 Bacteria 7909
30 Ga0316577_10005993 3300031733 Bacteria 6405
31 Ga0316577_10008079 3300031733 Bacteria 5626
32 Ga0316577_10010549 3300031733 Bacteria 4989
33 Ga0316577_10016598 3300031733 Unclassified 4062
34 Ga0316577_10016872 3300031733 Bacteria 4029
35 Ga0316577_10018991 3300031733 Bacteria 3804
36 Ga0316577_10020756 3300031733 Bacteria 3639
37 Ga0316577_10022841 3300031733 Bacteria 3474
38 Ga0316577_10041412 3300031733 Bacteria 2577
39 Ga0316577_10126292 3300031733 Bacteria 1438
40 Ga0316577_10129715 3300031733 Bacteria 1419
41 Ga0316577_10174218 3300031733 Bacteria 1214
42 Ga0316585_10016405 3300032137 Bacteria 2230
43 Ga0316585_10083015 3300032137 Unclassified 1044
44 Ga0316580_10039069 3300032139 Bacteria 1467
45 Ga0316580_10040175 3300032139 Unclassified 1445
46 Ga0316593_10043431 3300032168 Bacteria 1502
47 Ga0316593_10054167 3300032168 Unclassified 1360
48 Ga0316596_1028005 3300033541 Unclassified 1455
49 Ga0316574_0005897 3300035398 Bacteria 6571
50 Ga0316574_0215024 3300035398 Unclassified 1233
51 Ga0316574_0257207 3300035398 Bacteria 1115
52 Ga0316582_0005117 3300036647 Bacteria 6708
53 Ga0316582_0015273 3300036647 Unclassified 4386
54 Ga0316582_0016330 3300036647 Bacteria 4268
55 Ga0316582_0016399 3300036647 Bacteria 4259
56 Ga0316582_0026426 3300036647 Unclassified 3495
57 Ga0316582_0041892 3300036647 Bacteria 2865
58 Ga0316582_0065614 3300036647 Bacteria 2338
59 Ga0316582_0079078 3300036647 Bacteria 2143
60 Ga0316582_0091774 3300036647 Bacteria 2000
61 Ga0316582_0125838 3300036647 Bacteria 1718
62 Ga0316582_0157066 3300036647 Bacteria 1539
63 Ga0316582_0184875 3300036647 Bacteria 1419
64 Ga0316582_0268907 3300036647 Bacteria 1169
65 Ga0316584_0004272 3300036712 Bacteria 9436
66 Ga0316584_0006125 3300036712 Bacteria 8133
67 Ga0316584_0016994 3300036712 Bacteria 5222
68 Ga0316584_0019533 3300036712 Bacteria 4899
69 Ga0316584_0025448 3300036712 Bacteria 4340
70 Ga0316584_0034414 3300036712 Bacteria 3756
71 Ga0316584_0059053 3300036712 Bacteria 2872
72 Ga0316584_0064618 3300036712 Bacteria 2740
73 Ga0316584_0078552 3300036712 Bacteria 2472
74 Ga0316584_0096172 3300036712 Bacteria 2217
75 Ga0316584_0123868 3300036712 Bacteria 1931
76 Ga0316584_0140955 3300036712 Bacteria 1798
77 Ga0316581_0003034 3300037588 Bacteria 4131
78 Ga0316581_0010800 3300037588 Bacteria 2540
79 Ga0316581_0013973 3300037588 Bacteria 2282
80 Ga0400491_25539 3300038727 Bacteria 3792
81 Ga0400485_04027 3300038735 Bacteria 17737
82 Ga0400485_17970 3300038735 Bacteria 7751
83 Ga0400486_22880 3300038742 Bacteria 11550
84 Ga0400486_31968 3300038742 Bacteria 7509
85 Ga0400489_23887 3300039093 Bacteria 2551
86 Ga0400489_29841 3300039093 Bacteria 13361
87 Ga0400489_57687 3300039093 Bacteria 1935
88 Ga0400489_59199 3300039093 Bacteria 41959
89 Ga0400489_87775 3300039093 Unclassified 3147
90 Ga0400489_95118 3300039093 Unclassified 1724
91 Ga0400487_17695 3300039110 Bacteria 1934
92 Ga0451577_0003440 3300042876 Bacteria 17629
93 Ga0451577_0107491 3300042876 Bacteria 2494
94 Ga0451577_0132548 3300042876 Bacteria 2236
95 Ga0451577_0137867 3300042876 Bacteria 2191
96 Ga0451577_0310400 3300042876 Bacteria 1429
97 Ga0453683_0013980 3300044673 Bacteria 5222
98 Ga0453683_0014465 3300044673 Bacteria 5121
99 Ga0453684_0000055 3300044712 Bacteria 532014
100 Ga0453684_0000093 3300044712 Bacteria 384050
101 Ga0453684_0000106 3300044712 Bacteria 364365
102 Ga0453684_0000748 3300044712 Bacteria 113352
103 Ga0453684_0007740 3300044712 Bacteria 19617
104 Ga0453684_0017076 3300044712 Bacteria 11268
105 Ga0453684_0062738 3300044712 Bacteria 4758
106 Ga0453684_0111856 3300044712 Bacteria 3316
107 Ga0453684_0114627 3300044712 Bacteria 3267
108 Ga0453684_0122053 3300044712 Bacteria 3144
109 Ga0453684_0127012 3300044712 Unclassified 3067
110 Ga0453684_0145885 3300044712 Bacteria 2819
111 Ga0453684_0152046 3300044712 Bacteria 2749
112 Ga0453684_0190087 3300044712 Bacteria 2402
113 Ga0453684_0512004 3300044712 Unclassified 1327
114 Ga0453684_0628767 3300044712 Bacteria 1173
115 Ga0453684_0793161 3300044712 Bacteria 1022
116 Ga0451576_0004935 3300045051 Bacteria 16987
117 Ga0451576_0006725 3300045051 Bacteria 14004
118 Ga0451576_0056895 3300045051 Bacteria 4088
119 Ga0451576_0058952 3300045051 Bacteria 4009
120 Ga0451576_0121228 3300045051 Bacteria 2722
121 Ga0451576_0176271 3300045051 Bacteria 2232
122 Ga0451576_0184187 3300045051 Unclassified 2180
123 Ga0451576_0274562 3300045051 Bacteria 1762
124 Ga0501033_0044505 3300049570 Bacteria 3304
125 Ga0501034_0143653 3300049571 Bacteria 2365
126 Ga0501038_0105872 3300049574 Bacteria 2336
127 Ga0501039_0350331 3300049575 Bacteria 1160
128 Ga0501040_0075600 3300049576 Bacteria 2328
129 Ga0501041_0034526 3300049577 Bacteria 3063
130 Ga0501046_0109292 3300049580 Bacteria 2114
131 Ga0501071_0427409 3300049587 Bacteria 1012
132 Ga0501075_0013671 3300049591 Bacteria 5798
133 Ga0501080_0316073 3300049742 Bacteria 1415
134 Ga0501045_0110779 3300049824 Bacteria 2035
135 Ga0501084_0492001 3300054114 Bacteria 1036
136 2929297874 2929297113 Bacteria 3141306
137 Ga0400489_71369
138 Ga0265323_10018270
139 Ga0265323_10070989
140 Ga0265327_10011824
141 Ga0265316_10000008
142 Ga0316575_10043917
143 Ga0316579_10001918
144 Ga0316579_10002830
145 Ga0316579_10006631
146 Ga0316579_10009956
147 Ga0316579_10010085
148 Ga0316579_10016749
149 Ga0316579_10020195
150 Ga0316579_10026621
151 Ga0316579_10028657
152 Ga0316579_10113423
153 Ga0316579_10155421
154 Ga0265342_10037250
155 Ga0316576_10002297
156 Ga0316576_10009197
157 Ga0316576_10035078
158 Ga0316576_10035915
159 Ga0316576_10037255
160 Ga0316576_10106444
161 Ga0316578_10011224
162 Ga0316578_10014889
163 Ga0316578_10026231
164 Ga0316577_10000051
165 Ga0316577_10003533
166 Ga0316577_10005993
167 Ga0316577_10008079
168 Ga0316577_10010549
169 Ga0316577_10016598
170 Ga0316577_10016872
171 Ga0316577_10018991
172 Ga0316577_10020756
173 Ga0316577_10022841
174 Ga0316577_10041412
175 Ga0316577_10126292
176 Ga0316577_10129715
177 Ga0316577_10174218
178 Ga0316585_10016405
179 Ga0316585_10083015
180 Ga0316580_10039069
181 Ga0316580_10040175
182 Ga0316593_10043431
183 Ga0316593_10054167
184 Ga0316596_1028005
185 Ga0316574_0005897
186 Ga0316574_0215024
187 Ga0316574_0257207
188 Ga0316582_0005117
189 Ga0316582_0015273
190 Ga0316582_0016330
191 Ga0316582_0016399
192 Ga0316582_0026426
193 Ga0316582_0041892
194 Ga0316582_0065614
195 Ga0316582_0079078
196 Ga0316582_0091774
197 Ga0316582_0125838
198 Ga0316582_0157066
199 Ga0316582_0184875
200 Ga0316582_0268907
201 Ga0316584_0004272
202 Ga0316584_0006125
203 Ga0316584_0016994
204 Ga0316584_0019533
205 Ga0316584_0025448
206 Ga0316584_0034414
207 Ga0316584_0059053
208 Ga0316584_0064618
209 Ga0316584_0078552
210 Ga0316584_0096172
211 Ga0316584_0123868
212 Ga0316584_0140955
213 Ga0316581_0003034
214 Ga0316581_0010800
215 Ga0316581_0013973
216 Ga0400491_25539
217 Ga0400485_04027
218 Ga0400485_17970
219 Ga0400486_22880
220 Ga0400486_31968
221 Ga0400489_23887
222 Ga0400489_29841
223 Ga0400489_57687
224 Ga0400489_59199
225 Ga0400489_87775
226 Ga0400489_95118
227 Ga0400487_17695
228 Ga0451577_0003440
229 Ga0451577_0107491
230 Ga0451577_0132548
231 Ga0451577_0137867
232 Ga0451577_0310400
233 Ga0453683_0013980
234 Ga0453683_0014465
235 Ga0453684_0000055
236 Ga0453684_0000093
237 Ga0453684_0000106
238 Ga0453684_0000748
239 Ga0453684_0007740
240 Ga0453684_0017076
241 Ga0453684_0062738
242 Ga0453684_0111856
243 Ga0453684_0114627
244 Ga0453684_0122053
245 Ga0453684_0127012
246 Ga0453684_0145885
247 Ga0453684_0152046
248 Ga0453684_0190087
249 Ga0453684_0512004
250 Ga0453684_0628767
251 Ga0453684_0793161
252 Ga0451576_0004935
253 Ga0451576_0006725
254 Ga0451576_0056895
255 Ga0451576_0058952
256 Ga0451576_0121228
257 Ga0451576_0176271
258 Ga0451576_0184187
259 Ga0451576_0274562
260 Ga0501033_0044505
261 Ga0501034_0143653
262 Ga0501038_0105872
263 Ga0501039_0350331
264 Ga0501040_0075600
265 Ga0501041_0034526
266 Ga0501046_0109292
267 Ga0501071_0427409
268 Ga0501075_0013671
269 Ga0501080_0316073
270 Ga0501045_0110779
271 Ga0501084_0492001
272 2929297874

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10418

DHODB_Fe-S_bind

Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B

246

283

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5jca-assembly1.cif.gz_S nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni) from pyrococcus furiosus 0.9559 2 272
4yry-assembly1.cif.gz_A insights into flavin-based electron bifurcation via the nadh-dependent reduced ferredoxin-nadp oxidoreductase structure 0.9387 2 275
5jca-assembly1.cif.gz_S nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni) from pyrococcus furiosus 0.9289 2 272
4yry-assembly2.cif.gz_C insights into flavin-based electron bifurcation via the nadh-dependent reduced ferredoxin-nadp oxidoreductase structure 0.9169 2 275
4yry-assembly1.cif.gz_A insights into flavin-based electron bifurcation via the nadh-dependent reduced ferredoxin-nadp oxidoreductase structure 0.9158 2 275
ID Description Score Start End Superfamily
af_Q58841_92_194_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.985 103 204 3.40.50.80
af_Q58841_92_194_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.957 103 204 3.40.50.80
5ue9D02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.8459 97 204 3.40.50.80
2rc5C01 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.8228 2 91 2.40.30.10
af_P75824_106_229_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.8108 103 207 3.40.50.80
ID Description Score Start End GO Terms
AF-W2CGR8-F1-model_v4 FAD-binding FR-type domain-containing protein 0.9946 19 126 GO:0016491
AF-A0A3D3F8H6-F1-model_v4 Sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein 0.9942 31 165 GO:0016491
AF-A0A6M1XVM3-F1-model_v4 Sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein 0.9936 69 182 GO:0016020
AF-X0ZU85-F1-model_v4 Uncharacterized protein 0.9925 116 205
AF-A0A7X8M762-F1-model_v4 Sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein 0.9917 2 177 GO:0016491

Map