F165434

General Info

Members Datasets Scaffolds Average Seq Length
136 82 272 340

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100134365|Ga0070683_1001343652
Length 372
Sequence MKMRAWTERNAGHHKRSTVRVLAVCLGSSQLVTMSSAARLATTEDAGVFAMLAPHLAELDRFLHGQLTAFEPEIRAMVDYCLDTSGKRIRPALVFLGGWRGAGAIAPDLVRAAAVVELVHVATLVHDDIMDEAHVRRSRLTASRVYGSAPAVLLGDSLFAHGLYLATQFPTTEICAAITESTRRVCAGEIVQSLRRRSIDITRGDYRRIVELKTAELFRVSCFFGARLAGSEPGFVDAASRFGQHLGAAYQMYDDLVDFFGDEARVGKTLGTDLASGKLTLPLLELLDRLPADEATALRAEIAGERPPQFALRLRQMRELAIFPVIAGAVQAELTAATAALREWPGQPPTPLLLLLCEMLQAQVAALRPTDG

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
7 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
8 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
9 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
12 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
13 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
14 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
20 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
30 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
33 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
34 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
35 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
36 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
37 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
38 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
39 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
40 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
47 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
48 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
49 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
50 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
54 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
55 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
56 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
59 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
72 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
73 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
74 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
77 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
78 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
79 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
80 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
81 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.88
Nodule 0
Rhizoplane 0
Rhizosphere 91.18
Stem 0
Stem Tuber 0
Unclassified 8.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100134365 3300005329 Bacteria 2342
2 rootH2_10001109 3300003320 Bacteria 43109
3 rootH2_10029355 3300003320 Bacteria 5942
4 rootL2_10218899 3300003322 Bacteria 3252
5 Ga0070658_10044543 3300005327 Unclassified 3586
6 Ga0070683_100004707 3300005329 Bacteria 11277
7 Ga0068869_100000732 3300005334 Bacteria 18669
8 Ga0068869_100056962 3300005334 Bacteria 2852
9 Ga0068867_100049260 3300005459 Unclassified 3101
10 Ga0070664_100264135 3300005564 Bacteria 1549
11 Ga0068856_100000489 3300005614 Bacteria 43770
12 Ga0070717_10000003 3300006028 Bacteria 370103
13 Ga0075365_10004671 3300006038 Bacteria 7299
14 Ga0075362_10000402 3300006177 Bacteria 12446
15 Ga0097621_100047350 3300006237 Bacteria 3484
16 Ga0068871_100001653 3300006358 Bacteria 14997
17 Ga0068865_100000665 3300006881 Bacteria 19407
18 Ga0105240_10535503 3300009093 Unclassified 1298
19 Ga0111539_10063690 3300009094 Bacteria 4363
20 Ga0105238_10159658 3300009551 Unclassified 2230
21 Ga0163163_10352864 3300014325 Bacteria 1527
22 Ga0157376_10079460 3300014969 Bacteria 2812
23 Ga0207652_10008475 3300025921 Bacteria 8272
24 Ga0207704_10004519 3300025938 Bacteria 6360
25 Ga0207689_10000773 3300025942 Bacteria 30688
26 Ga0207689_10233934 3300025942 Bacteria 1519
27 Ga0207661_10011097 3300025944 Bacteria 6512
28 Ga0207661_10093627 3300025944 Bacteria 2508
29 Ga0207702_10000347 3300026078 Bacteria 53267
30 Ga0207648_10002009 3300026089 Bacteria 22199
31 Ga0207674_10101961 3300026116 Unclassified 2850
32 Ga0207675_100442956 3300026118 Unclassified 1286
33 Ga0207683_10536801 3300026121 Bacteria 1081
34 Ga0265337_1028652 3300028556 Bacteria 1670
35 Ga0265319_1000022 3300028563 Bacteria 150752
36 Ga0265319_1000481 3300028563 Bacteria 28070
37 Ga0265319_1015004 3300028563 Bacteria 3019
38 Ga0265319_1016677 3300028563 Unclassified 2813
39 Ga0265319_1023568 3300028563 Bacteria 2229
40 Ga0265334_10007252 3300028573 Bacteria 4756
41 Ga0265334_10044411 3300028573 Bacteria 1726
42 Ga0265318_10000007 3300028577 Bacteria 280699
43 Ga0265318_10000158 3300028577 Bacteria 60618
44 Ga0265318_10000401 3300028577 Bacteria 33792
45 Ga0265318_10001679 3300028577 Bacteria 12708
46 Ga0265323_10001472 3300028653 Bacteria 11527
47 Ga0265322_10001456 3300028654 Bacteria 7744
48 Ga0265336_10010214 3300028666 Unclassified 3218
49 Ga0265338_10022341 3300028800 Bacteria 6552
50 Ga0265338_10025333 3300028800 Bacteria 6024
51 Ga0265324_10002803 3300029957 Bacteria 8600
52 Ga0265330_10094706 3300031235 Bacteria 1280
53 Ga0265332_10016097 3300031238 Unclassified 3299
54 Ga0265328_10010289 3300031239 Bacteria 3771
55 Ga0265328_10057420 3300031239 Bacteria 1429
56 Ga0265320_10002889 3300031240 Bacteria 11783
57 Ga0265320_10009144 3300031240 Bacteria 5998
58 Ga0265320_10029720 3300031240 Unclassified 2825
59 Ga0265320_10096774 3300031240 Bacteria 1362
60 Ga0265331_10002222 3300031250 Bacteria 13313
61 Ga0265331_10007926 3300031250 Bacteria 6082
62 Ga0265331_10011225 3300031250 Bacteria 4913
63 Ga0265327_10000342 3300031251 Bacteria 88184
64 Ga0265327_10006442 3300031251 Bacteria 9382
65 Ga0265327_10015258 3300031251 Bacteria 4971
66 Ga0265327_10035960 3300031251 Bacteria 2729
67 Ga0265327_10121452 3300031251 Bacteria 1237
68 Ga0265316_10005988 3300031344 Bacteria 11701
69 Ga0265316_10016270 3300031344 Bacteria 6456
70 Ga0265316_10018772 3300031344 Bacteria 5936
71 Ga0265316_10052181 3300031344 Unclassified 3209
72 Ga0265316_10148133 3300031344 Bacteria 1759
73 Ga0265313_10000163 3300031595 Bacteria 69742
74 Ga0265313_10000876 3300031595 Bacteria 30406
75 Ga0265313_10001356 3300031595 Bacteria 23076
76 Ga0265313_10001488 3300031595 Bacteria 21832
77 Ga0307508_10000071 3300031616 Bacteria 118790
78 Ga0265314_10001238 3300031711 Bacteria 29136
79 Ga0265314_10004799 3300031711 Bacteria 12372
80 Ga0265314_10079103 3300031711 Bacteria 2174
81 Ga0265342_10022095 3300031712 Bacteria 4051
82 Ga0265342_10032116 3300031712 Bacteria 3239
83 Ga0265342_10073482 3300031712 Bacteria 1989
84 Ga0307410_10000021 3300031852 Bacteria 63358
85 Ga0307407_10011575 3300031903 Bacteria 4205
86 Ga0307409_100000013 3300031995 Bacteria 64596
87 Ga0307416_100000057 3300032002 Bacteria 105624
88 Ga0307411_10145170 3300032005 Bacteria 1755
89 Ga0373935_0051335 3300035692 Bacteria 2619
90 Ga0439461_0019385 3300041410 Bacteria 1339
91 Ga0439446_0007216 3300042156 Bacteria 2917
92 Ga0451577_0000076 3300042876 Bacteria 225346
93 Ga0451577_0175724 3300042876 Bacteria 1930
94 Ga0453683_0000265 3300044673 Bacteria 68647
95 Ga0453683_0053473 3300044673 Bacteria 2527
96 Ga0453684_0024682 3300044712 Bacteria 8769
97 Ga0453684_0113276 3300044712 Bacteria 3290
98 Ga0453684_0351778 3300044712 Bacteria 1661
99 Ga0453684_0612284 3300044712 Bacteria 1192
100 Ga0451576_0000416 3300045051 Bacteria 98951
101 Ga0451576_0016882 3300045051 Bacteria 8041
102 Ga0451576_0019023 3300045051 Bacteria 7506
103 Ga0451576_0550462 3300045051 Bacteria 1212
104 Ga0466967_0006981 3300045976 Bacteria 8082
105 Ga0501031_0127927 3300049568 Bacteria 1659
106 Ga0501032_0016097 3300049569 Bacteria 5262
107 Ga0501033_0000404 3300049570 Bacteria 41364
108 Ga0501033_0108431 3300049570 Bacteria 2022
109 Ga0501033_0239787 3300049570 Bacteria 1286
110 Ga0501038_0081372 3300049574 Bacteria 2728
111 Ga0501039_0013698 3300049575 Bacteria 6201
112 Ga0501043_0047945 3300049579 Bacteria 3358
113 Ga0501043_0280457 3300049579 Bacteria 1277
114 Ga0501046_0003719 3300049580 Bacteria 13965
115 Ga0501046_0060608 3300049580 Bacteria 2960
116 Ga0501046_0093088 3300049580 Bacteria 2316
117 Ga0501047_0001814 3300049581 Bacteria 20633
118 Ga0501048_0001932 3300049582 Bacteria 15751
119 Ga0501070_0136009 3300049586 Bacteria 2029
120 Ga0501243_000088 3300049675 Bacteria 9416
121 Ga0501083_0001211 3300049744 Bacteria 17470
122 Ga0501083_0032399 3300049744 Bacteria 3583
123 Ga0501035_0006288 3300049822 Bacteria 11173
124 Ga0501035_0016783 3300049822 Bacteria 6750
125 Ga0501035_0094794 3300049822 Bacteria 2624
126 Ga0501044_0000080 3300049823 Bacteria 116837
127 Ga0501044_0009733 3300049823 Bacteria 10458
128 Ga0501044_0014100 3300049823 Bacteria 8628
129 Ga0501045_0098155 3300049824 Bacteria 2167
130 nmdc:mga03683_4406_c1 3300050489 Bacteria 4670
131 nmdc:mga0yw44_69554_c1 3300050492 Bacteria 2181
132 nmdc:mga0k408_25357_c1 3300050493 Bacteria 2534
133 nmdc:mga0k408_69164_c1 3300050493 Bacteria 2060
134 Ga0500568_0004907 3300053139 Bacteria 7042
135 Ga0500622_0002057 3300053156 Bacteria 14993
136 Ga0501082_0167750 3300060353 Bacteria 1908
137 Ga0070683_100134365
138 rootH2_10001109
139 rootH2_10029355
140 rootL2_10218899
141 Ga0070658_10044543
142 Ga0070683_100004707
143 Ga0068869_100000732
144 Ga0068869_100056962
145 Ga0068867_100049260
146 Ga0070664_100264135
147 Ga0068856_100000489
148 Ga0070717_10000003
149 Ga0075365_10004671
150 Ga0075362_10000402
151 Ga0097621_100047350
152 Ga0068871_100001653
153 Ga0068865_100000665
154 Ga0105240_10535503
155 Ga0111539_10063690
156 Ga0105238_10159658
157 Ga0163163_10352864
158 Ga0157376_10079460
159 Ga0207652_10008475
160 Ga0207704_10004519
161 Ga0207689_10000773
162 Ga0207689_10233934
163 Ga0207661_10011097
164 Ga0207661_10093627
165 Ga0207702_10000347
166 Ga0207648_10002009
167 Ga0207674_10101961
168 Ga0207675_100442956
169 Ga0207683_10536801
170 Ga0265337_1028652
171 Ga0265319_1000022
172 Ga0265319_1000481
173 Ga0265319_1015004
174 Ga0265319_1016677
175 Ga0265319_1023568
176 Ga0265334_10007252
177 Ga0265334_10044411
178 Ga0265318_10000007
179 Ga0265318_10000158
180 Ga0265318_10000401
181 Ga0265318_10001679
182 Ga0265323_10001472
183 Ga0265322_10001456
184 Ga0265336_10010214
185 Ga0265338_10022341
186 Ga0265338_10025333
187 Ga0265324_10002803
188 Ga0265330_10094706
189 Ga0265332_10016097
190 Ga0265328_10010289
191 Ga0265328_10057420
192 Ga0265320_10002889
193 Ga0265320_10009144
194 Ga0265320_10029720
195 Ga0265320_10096774
196 Ga0265331_10002222
197 Ga0265331_10007926
198 Ga0265331_10011225
199 Ga0265327_10000342
200 Ga0265327_10006442
201 Ga0265327_10015258
202 Ga0265327_10035960
203 Ga0265327_10121452
204 Ga0265316_10005988
205 Ga0265316_10016270
206 Ga0265316_10018772
207 Ga0265316_10052181
208 Ga0265316_10148133
209 Ga0265313_10000163
210 Ga0265313_10000876
211 Ga0265313_10001356
212 Ga0265313_10001488
213 Ga0307508_10000071
214 Ga0265314_10001238
215 Ga0265314_10004799
216 Ga0265314_10079103
217 Ga0265342_10022095
218 Ga0265342_10032116
219 Ga0265342_10073482
220 Ga0307410_10000021
221 Ga0307407_10011575
222 Ga0307409_100000013
223 Ga0307416_100000057
224 Ga0307411_10145170
225 Ga0373935_0051335
226 Ga0439461_0019385
227 Ga0439446_0007216
228 Ga0451577_0000076
229 Ga0451577_0175724
230 Ga0453683_0000265
231 Ga0453683_0053473
232 Ga0453684_0024682
233 Ga0453684_0113276
234 Ga0453684_0351778
235 Ga0453684_0612284
236 Ga0451576_0000416
237 Ga0451576_0016882
238 Ga0451576_0019023
239 Ga0451576_0550462
240 Ga0466967_0006981
241 Ga0501031_0127927
242 Ga0501032_0016097
243 Ga0501033_0000404
244 Ga0501033_0108431
245 Ga0501033_0239787
246 Ga0501038_0081372
247 Ga0501039_0013698
248 Ga0501043_0047945
249 Ga0501043_0280457
250 Ga0501046_0003719
251 Ga0501046_0060608
252 Ga0501046_0093088
253 Ga0501047_0001814
254 Ga0501048_0001932
255 Ga0501070_0136009
256 Ga0501243_000088
257 Ga0501083_0001211
258 Ga0501083_0032399
259 Ga0501035_0006288
260 Ga0501035_0016783
261 Ga0501035_0094794
262 Ga0501044_0000080
263 Ga0501044_0009733
264 Ga0501044_0014100
265 Ga0501045_0098155
266 nmdc:mga03683_4406_c1
267 nmdc:mga0yw44_69554_c1
268 nmdc:mga0k408_25357_c1
269 nmdc:mga0k408_69164_c1
270 Ga0500568_0004907
271 Ga0500622_0002057
272 Ga0501082_0167750

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

71

313

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jyx-assembly1.cif.gz_G-2 crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.9377 19 337
4jxy-assembly1.cif.gz_A crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica 0.9288 19 337
3wjn-assembly1.cif.gz_A crystal structure of octaprenyl pyrophosphate synthase from escherichia coli with farnesyl s-thiol-pyrophosphate (fspp) 0.9277 17 331
4jyx-assembly2.cif.gz_B crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.9244 19 335
3wjo-assembly1.cif.gz_A crystal structure of octaprenyl pyrophosphate synthase from escherichia coli with isopentenyl pyrophosphate (ipp) 0.917 19 331
ID Description Score Start End Superfamily
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9329 19 337 1.10.600.10
3oyrB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9138 20 333 1.10.600.10
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9135 19 337 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9007 25 332 1.10.600.10
4lobA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8974 24 335 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A349N8T9-F1-model_v4 Polyprenyl synthetase 0.9779 43 339 GO:0004659
GO:0008299
AF-B5JQS8-F1-model_v4 Polyprenyl synthetase superfamily 0.9702 31 337 GO:0004659
GO:0008299
AF-A0A2V5ZH57-F1-model_v4 Polyprenyl synthetase family protein 0.9557 18 251 GO:0004659
GO:0008299
AF-A0A2E7SSF7-F1-model_v4 Geranylgeranyl pyrophosphate synthase 0.9552 20 234 GO:0004659
GO:0008299
AF-A0A7C7Z777-F1-model_v4 deleted 0.9546 18 338

Map