F165167

General Info

Members Datasets Scaffolds Average Seq Length
136 119 130 335

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10156618|rootH1_101566184
Length 384
Sequence MALTGTSWVRPGALDYGAKSKKLNPKALRFCQFSLIKRRFCTSLFNYICRMRYLCVLLVTCTAFIHQPAWRKIQISGKAQGTSYHITWYARDSTFGQQQIDSILAKIDTSLSIYNPQSLISQFNNSPGGVVMDKHFQNVLNKSMDTYRQTGGIFDITVQPLVQAWGFGPKKMTSLPDSGTIRLLKACVSSENLYTKGHTLLKRKTCTSIDVNGIAQGYSVDVIANYLEAHGIQNYLVEVGGEIRIKGHKQPGGEKMKIGIEAPGENDFELSMISKVVAVEQGAITTSGSYRKFYESEGKKITHIIDPRTGYPAQNELISVTVYAPDAITADAYDNALMVMGLKKALQFVEQRKEMAAHFIYRTPAGAIADTASSRFYKLLKAER

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
3 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
4 2738541278 Niastella sp. CF465 Isolate Unclassified
5 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
6 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
7 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
8 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
9 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
10 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
11 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
14 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
17 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
18 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
19 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
20 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
76 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
77 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
78 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
79 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
82 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
83 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
84 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
85 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
86 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
87 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
88 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
95 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
96 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
97 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
107 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
112 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
113 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
114 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
115 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
116 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
119 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.85
Metatranscriptomes 0
Isolates 5.15

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.71
Nodule 0
Rhizoplane 0
Rhizosphere 77.21
Stem 0
Stem Tuber 0
Unclassified 8.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1959581 2162886007 Bacteria 2131
2 JGI24744J21845_10021672 3300002077 Bacteria 1263
3 rootH1_10156618 3300003316 Bacteria 3291
4 rootH1_10156618 3300003323 Bacteria 2678
5 rootH2_10060529 3300003320 Bacteria 9542
6 rootH2_10210191 3300003320 Unclassified 1606
7 rootL2_10004285 3300003322 Bacteria 2276
8 rootL2_10327200 3300003322 Bacteria 2068
9 rootH1_10022949 3300003323 Bacteria 8621
10 JGI25160J50197_1007522 3300003354 Bacteria 4252
11 Ga0065165_1000066 3300005262 Bacteria 172490
12 Ga0065704_10071492 3300005289 Bacteria 10939
13 Ga0068869_100085578 3300005334 Unclassified 2361
14 Ga0070666_10030254 3300005335 Unclassified 3566
15 Ga0068868_100005083 3300005338 Bacteria 9237
16 Ga0070674_100005850 3300005356 Bacteria 7150
17 Ga0070667_100142423 3300005367 Unclassified 2101
18 Ga0070678_100014586 3300005456 Bacteria 4965
19 Ga0070662_100100328 3300005457 Unclassified 2190
20 Ga0068867_100017789 3300005459 Bacteria 5047
21 Ga0070672_100129257 3300005543 Bacteria 2075
22 Ga0070665_100022680 3300005548 Bacteria 6320
23 Ga0068855_100397847 3300005563 Bacteria 1510
24 Ga0070664_100411962 3300005564 Bacteria 1237
25 Ga0068857_100022498 3300005577 Bacteria 5547
26 Ga0068854_100097003 3300005578 Viruses 2203
27 Ga0068856_100064637 3300005614 Bacteria 3615
28 Ga0068859_100014275 3300005617 Bacteria 7965
29 Ga0068866_10087107 3300005718 Unclassified 1692
30 Ga0068861_100127668 3300005719 Unclassified 2060
31 Ga0075366_10048988 3300006195 Bacteria 2506
32 Ga0097621_100014120 3300006237 Bacteria 5971
33 Ga0075370_10130323 3300006353 Bacteria 1467
34 Ga0068871_100074740 3300006358 Bacteria 2796
35 Ga0075428_100195092 3300006844 Bacteria 2190
36 Ga0075431_100009021 3300006847 Bacteria 10001
37 Ga0075429_100033117 3300006880 Bacteria 4490
38 Ga0068865_100159242 3300006881 Bacteria 1720
39 Ga0097620_100014276 3300006931 Bacteria 7965
40 Ga0111539_10030487 3300009094 Bacteria 6555
41 Ga0114129_10003229 3300009147 Bacteria 22876
42 Ga0114129_10036050 3300009147 Bacteria 6986
43 Ga0105243_10000008 3300009148 Bacteria 390270
44 Ga0105237_10103520 3300009545 Bacteria 2838
45 Ga0105249_10212771 3300009553 Unclassified 1898
46 Ga0105249_10250834 3300009553 Unclassified 1755
47 Ga0105239_10044837 3300010375 Bacteria 4847
48 Ga0105239_10102508 3300010375 Unclassified 3167
49 Ga0105239_10349902 3300010375 Unclassified 1668
50 Ga0157370_10163766 3300013104 Bacteria 2069
51 Ga0157374_10341022 3300013296 Bacteria 1488
52 Ga0163162_10008429 3300013306 Bacteria 10050
53 Ga0163162_10028557 3300013306 Bacteria 5520
54 Ga0163162_10590368 3300013306 Bacteria 1237
55 Ga0157372_10032203 3300013307 Bacteria 5746
56 Ga0157372_10246283 3300013307 Bacteria 2074
57 Ga0157372_10506172 3300013307 Bacteria 1408
58 Ga0157376_10375384 3300014969 Bacteria 1368
59 Ga0209676_1000845 3300025292 Bacteria 39579
60 Ga0207426_1000023 3300025302 Bacteria 545465
61 Ga0207680_10103555 3300025903 Bacteria 1833
62 Ga0207645_10001091 3300025907 Bacteria 22388
63 Ga0207671_10061125 3300025914 Bacteria 2795
64 Ga0207650_10335396 3300025925 Bacteria 1241
65 Ga0207686_10103444 3300025934 Bacteria 1905
66 Ga0207709_10000006 3300025935 Bacteria 800946
67 Ga0207669_10052611 3300025937 Bacteria 2447
68 Ga0207691_10256045 3300025940 Unclassified 1510
69 Ga0207689_10153418 3300025942 Unclassified 1898
70 Ga0207667_10051646 3300025949 Bacteria 4332
71 Ga0207712_10356508 3300025961 Unclassified 1217
72 Ga0207658_10282132 3300025986 Bacteria 1424
73 Ga0207648_10010398 3300026089 Bacteria 8821
74 Ga0207674_10044331 3300026116 Bacteria 4581
75 Ga0207675_100048512 3300026118 Unclassified 3964
76 Ga0207683_10001620 3300026121 Bacteria 20185
77 Ga0268266_10000022 3300028379 Bacteria 508060
78 Ga0268265_10356963 3300028380 Unclassified 1337
79 Ga0265331_10010268 3300031250 Bacteria 5191
80 Ga0265327_10000214 3300031251 Bacteria 120181
81 Ga0307509_10066468 3300031507 Unclassified 3783
82 Ga0307508_10000841 3300031616 Bacteria 35677
83 Ga0307405_10048548 3300031731 Bacteria 2618
84 Ga0307406_10408085 3300031901 Unclassified 1079
85 Ga0307414_10149213 3300032004 Bacteria 1842
86 Ga0439436_0005594 3300041404 Bacteria 3853
87 Ga0451853_0730169 3300041512 Bacteria 2860
88 Ga0439449_0010083 3300042007 Bacteria 3574
89 Ga0439457_001513 3300042014 Bacteria 6973
90 Ga0439462_0018202 3300042015 Bacteria 1823
91 Ga0466969_0036855 3300044656 Bacteria 2467
92 Ga0466972_0003834 3300044658 Bacteria 7481
93 Ga0466966_0000357 3300044684 Bacteria 29675
94 Ga0453684_0003617 3300044712 Bacteria 34455
95 Ga0466957_0020213 3300044842 Bacteria 3917
96 Ga0466959_0000184 3300045049 Bacteria 40923
97 Ga0495638_0095890 3300046460 Unclassified 1781
98 Ga0495648_0000994 3300046524 Bacteria 29163
99 Ga0495668_0007975 3300046616 Bacteria 6674
100 Ga0495625_0163680 3300046660 Unclassified 1489
101 Ga0501032_0004555 3300049569 Bacteria 10429
102 Ga0501034_0010099 3300049571 Bacteria 9849
103 Ga0501034_0012213 3300049571 Bacteria 8879
104 Ga0501037_0034851 3300049573 Bacteria 3713
105 Ga0501038_0015689 3300049574 Bacteria 6885
106 Ga0501043_0016472 3300049579 Bacteria 5794
107 Ga0501043_0180013 3300049579 Bacteria 1647
108 Ga0501047_0034086 3300049581 Bacteria 4916
109 Ga0501225_0023345 3300049705 Bacteria 1704
110 Ga0501225_0060578 3300049705 Unclassified 1065
111 Ga0501035_0046161 3300049822 Bacteria 3918
112 Ga0501044_0003371 3300049823 Bacteria 18013
113 Ga0501044_0211586 3300049823 Bacteria 1893
114 Ga0501284_00065 3300050005 Bacteria 32381
115 nmdc:mga0k408_104193_c1 3300050493 Bacteria 1674
116 nmdc:mga0k408_15950_c1 3300050493 Bacteria 4161
117 nmdc:mga07m45_106830_c1 3300050496 Bacteria 1610
118 nmdc:mga05p37_2554_c1 3300050507 Bacteria 21166
119 nmdc:mga06r32_13898_c1 3300050510 Bacteria 7304
120 Ga0500578_0005906 3300053086 Bacteria 8239
121 Ga0500578_0036915 3300053086 Bacteria 3138
122 Ga0500583_0000141 3300053092 Bacteria 30432
123 Ga0500583_0027105 3300053092 Bacteria 2470
124 Ga0500650_0000007 3300053098 Bacteria 108097
125 Ga0500642_0079712 3300053130 Bacteria 1502
126 Ga0500559_0116750 3300053136 Bacteria 1239
127 Ga0500564_027475 3300053138 Bacteria 2619
128 Ga0500568_0015112 3300053139 Bacteria 3462
129 Ga0500588_0116047 3300053146 Unclassified 939
130 Ga0500622_0001222 3300053156 Bacteria 21108

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053146 Ga0500588_0116047 Ga0500588_0116047_84_911 270
2 3300009094 Ga0111539_10030487 Ga0111539_100304872 309
3 3300003320 rootH2_10060529 rootH2_100605296 311
4 3300003322 rootL2_10327200 rootL2_103272002 311
5 3300005289 Ga0065704_10071492 Ga0065704_100714923 313
6 3300053138 Ga0500564_027475 Ga0500564_027475_1352_2329 316
7 3300050493 nmdc:mga0k408_104193_c1 nmdc:mga0k408_104193_c1_379_1362 318
8 3300053136 Ga0500559_0116750 Ga0500559_0116750_36_998 318
9 3300053139 Ga0500568_0015112 Ga0500568_0015112_1375_2346 319
10 3300031901 Ga0307406_10408085 Ga0307406_104080851 321
11 3300049705 Ga0501225_0060578 Ga0501225_0060578_64_1050 324
12 3300006195 Ga0075366_10048988 Ga0075366_100489884 325
13 3300006353 Ga0075370_10130323 Ga0075370_101303231 325
14 3300009545 Ga0105237_10103520 Ga0105237_101035202 325
15 3300013307 Ga0157372_10032203 Ga0157372_100322034 325
16 3300025914 Ga0207671_10061125 Ga0207671_100611252 325
17 3300041512 Ga0451853_0730169 Ga0451853_0730169_1639_2622 325
18 3300050496 nmdc:mga07m45_106830_c1 nmdc:mga07m45_106830_c1_565_1548 325
19 3300053092 Ga0500583_0000141 Ga0500583_0000141_290_1306 325
20 3300053092 Ga0500583_0027105 Ga0500583_0027105_1243_2226 325
21 iso_pu_bacteria 2738541278 2738731379 325
22 3300005335 Ga0070666_10030254 Ga0070666_100302544 328
23 3300006358 Ga0068871_100074740 Ga0068871_1000747403 328
24 3300009553 Ga0105249_10250834 Ga0105249_102508342 328
25 3300010375 Ga0105239_10102508 Ga0105239_101025083 328
26 3300025942 Ga0207689_10153418 Ga0207689_101534182 328
27 3300025961 Ga0207712_10356508 Ga0207712_103565081 328
28 3300028380 Ga0268265_10356963 Ga0268265_103569631 328
29 3300031507 Ga0307509_10066468 Ga0307509_100664683 328
30 3300031616 Ga0307508_10000841 Ga0307508_1000084122 328
31 3300046460 Ga0495638_0095890 Ga0495638_0095890_468_1466 328
32 3300050005 Ga0501284_00065 Ga0501284_00065_28532_29533 328
33 iso_pu_bacteria 2890737413 2890739397 328
34 3300003320 rootH2_10210191 rootH2_102101911 329
35 3300003323 rootH1_10022949 rootH1_100229497 329
36 3300009148 Ga0105243_10000008 Ga0105243_1000000827 329
37 3300010375 Ga0105239_10044837 Ga0105239_100448375 329
38 3300025935 Ga0207709_10000006 Ga0207709_10000006452 329
39 3300031250 Ga0265331_10010268 Ga0265331_100102682 329
40 3300031251 Ga0265327_10000214 Ga0265327_1000021460 329
41 3300049705 Ga0501225_0023345 Ga0501225_0023345_645_1640 329
42 3300003316 rootH1_10156618 rootH1_101566184 330
43 3300003322 rootL2_10004285 rootL2_100042852 330
44 3300005563 Ga0068855_100397847 Ga0068855_1003978472 330
45 3300005577 Ga0068857_100022498 Ga0068857_1000224985 330
46 3300005614 Ga0068856_100064637 Ga0068856_1000646373 330
47 3300006844 Ga0075428_100195092 Ga0075428_1001950922 330
48 3300006847 Ga0075431_100009021 Ga0075431_1000090216 330
49 3300006880 Ga0075429_100033117 Ga0075429_1000331172 330
50 3300009147 Ga0114129_10003229 Ga0114129_1000322916 330
51 3300009147 Ga0114129_10036050 Ga0114129_100360505 330
52 3300013296 Ga0157374_10341022 Ga0157374_103410222 330
53 3300013307 Ga0157372_10246283 Ga0157372_102462832 330
54 3300025949 Ga0207667_10051646 Ga0207667_100516461 330
55 3300026116 Ga0207674_10044331 Ga0207674_100443314 330
56 3300032004 Ga0307414_10149213 Ga0307414_101492132 330
57 3300041404 Ga0439436_0005594 Ga0439436_0005594_276_1292 330
58 3300042007 Ga0439449_0010083 Ga0439449_0010083_429_1445 330
59 3300042014 Ga0439457_001513 Ga0439457_001513_5570_6586 330
60 3300042015 Ga0439462_0018202 Ga0439462_0018202_578_1594 330
61 3300044656 Ga0466969_0036855 Ga0466969_0036855_238_1236 330
62 3300044658 Ga0466972_0003834 Ga0466972_0003834_504_1505 330
63 3300044684 Ga0466966_0000357 Ga0466966_0000357_213_1211 330
64 3300044842 Ga0466957_0020213 Ga0466957_0020213_2084_3082 330
65 3300045049 Ga0466959_0000184 Ga0466959_0000184_38512_39510 330
66 3300049569 Ga0501032_0004555 Ga0501032_0004555_1869_2870 330
67 3300049571 Ga0501034_0010099 Ga0501034_0010099_1155_2174 330
68 3300049571 Ga0501034_0012213 Ga0501034_0012213_7262_8263 330
69 3300049573 Ga0501037_0034851 Ga0501037_0034851_1785_2786 330
70 3300049574 Ga0501038_0015689 Ga0501038_0015689_928_1929 330
71 3300049579 Ga0501043_0180013 Ga0501043_0180013_509_1510 330
72 3300049581 Ga0501047_0034086 Ga0501047_0034086_2253_3254 330
73 3300049822 Ga0501035_0046161 Ga0501035_0046161_509_1510 330
74 3300049823 Ga0501044_0003371 Ga0501044_0003371_16085_17086 330
75 3300049823 Ga0501044_0211586 Ga0501044_0211586_341_1360 330
76 3300050493 nmdc:mga0k408_15950_c1 nmdc:mga0k408_15950_c1_2709_3719 330
77 3300050507 nmdc:mga05p37_2554_c1 nmdc:mga05p37_2554_c1_894_1901 330
78 3300050510 nmdc:mga06r32_13898_c1 nmdc:mga06r32_13898_c1_1212_2231 330
79 3300053086 Ga0500578_0005906 Ga0500578_0005906_398_1402 330
80 3300053086 Ga0500578_0036915 Ga0500578_0036915_246_1247 330
81 3300053098 Ga0500650_0000007 Ga0500650_0000007_49699_50730 330
82 3300053130 Ga0500642_0079712 Ga0500642_0079712_51_1052 330
83 iso_pu_bacteria 2929154850 2929158621 330
84 3300002077 JGI24744J21845_10021672 JGI24744J21845_100216721 331
85 3300005334 Ga0068869_100085578 Ga0068869_1000855782 331
86 3300005338 Ga0068868_100005083 Ga0068868_1000050837 331
87 3300005356 Ga0070674_100005850 Ga0070674_1000058505 331
88 3300005367 Ga0070667_100142423 Ga0070667_1001424232 331
89 3300005456 Ga0070678_100014586 Ga0070678_1000145863 331
90 3300005457 Ga0070662_100100328 Ga0070662_1001003282 331
91 3300005459 Ga0068867_100017789 Ga0068867_1000177892 331
92 3300005543 Ga0070672_100129257 Ga0070672_1001292572 331
93 3300005548 Ga0070665_100022680 Ga0070665_1000226802 331
94 3300005564 Ga0070664_100411962 Ga0070664_1004119622 331
95 3300005617 Ga0068859_100014275 Ga0068859_1000142751 331
96 3300005718 Ga0068866_10087107 Ga0068866_100871071 331
97 3300005719 Ga0068861_100127668 Ga0068861_1001276682 331
98 3300006237 Ga0097621_100014120 Ga0097621_1000141202 331
99 3300006881 Ga0068865_100159242 Ga0068865_1001592421 331
100 3300006931 Ga0097620_100014276 Ga0097620_1000142761 331
101 3300009553 Ga0105249_10212771 Ga0105249_102127712 331
102 3300010375 Ga0105239_10349902 Ga0105239_103499021 331
103 3300013306 Ga0163162_10028557 Ga0163162_100285575 331
104 3300013306 Ga0163162_10590368 Ga0163162_105903681 331
105 3300014969 Ga0157376_10375384 Ga0157376_103753842 331
106 3300025903 Ga0207680_10103555 Ga0207680_101035552 331
107 3300025907 Ga0207645_10001091 Ga0207645_1000109116 331
108 3300025925 Ga0207650_10335396 Ga0207650_103353962 331
109 3300025934 Ga0207686_10103444 Ga0207686_101034442 331
110 3300025937 Ga0207669_10052611 Ga0207669_100526112 331
111 3300025940 Ga0207691_10256045 Ga0207691_102560452 331
112 3300025986 Ga0207658_10282132 Ga0207658_102821321 331
113 3300026089 Ga0207648_10010398 Ga0207648_100103984 331
114 3300026118 Ga0207675_100048512 Ga0207675_1000485124 331
115 3300026121 Ga0207683_10001620 Ga0207683_1000162016 331
116 3300046660 Ga0495625_0163680 Ga0495625_0163680_61_1095 331
117 3300049579 Ga0501043_0016472 Ga0501043_0016472_1236_2237 331
118 3300003354 JGI25160J50197_1007522 JGI25160J50197_10075224 332
119 3300013307 Ga0157372_10506172 Ga0157372_105061721 332
120 3300025302 Ga0207426_1000023 Ga0207426_1000023433 332
121 3300044712 Ga0453684_0003617 Ga0453684_0003617_12471_13475 332
122 3300046524 Ga0495648_0000994 Ga0495648_0000994_18494_19504 332
123 3300046616 Ga0495668_0007975 Ga0495668_0007975_1307_2317 332
124 3300053156 Ga0500622_0001222 Ga0500622_0001222_18021_19031 332
125 iso_pu_bacteria 2522125168 2522550743 333
126 3300013104 Ga0157370_10163766 Ga0157370_101637662 334
127 3300005578 Ga0068854_100097003 Ga0068854_1000970032 335
128 3300028379 Ga0268266_10000022 Ga0268266_10000022130 335
129 iso_pu_bacteria 2721755487 2722728822 336
130 iso_pu_bacteria 2904780799 2904785401 336
131 iso_pu_bacteria 2919177583 2919179183 336
132 3300013306 Ga0163162_10008429 Ga0163162_100084299 337
133 3300005262 Ga0065165_1000066 Ga0065165_1000066101 338
134 3300025292 Ga0209676_1000845 Ga0209676_100084520 338
135 3300031731 Ga0307405_10048548 Ga0307405_100485481 338
136 2162886007 SwRhRL2b_contig_1959581 SwRhRL2b_0313.00006900 340

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02424

ApbE

ApbE family

80

359

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nxj-assembly2.cif.gz_B flavin transferase apbe from vibrio cholerae, h257g mutant 0.9236 30 337
6nxj-assembly2.cif.gz_B flavin transferase apbe from vibrio cholerae, h257g mutant 0.9145 30 337
4ifx-assembly1.cif.gz_A crystal structure of treponema pallidum tp0796 flavin trafficking protein, fad substrate bound form 0.8974 28 339
6nxi-assembly1.cif.gz_A flavin transferase apbe from vibrio cholerae 0.8941 29 337
6nxj-assembly1.cif.gz_A flavin transferase apbe from vibrio cholerae, h257g mutant 0.894 30 337
ID Description Score Start End Superfamily
6nxjB00 Alpha Beta;Roll;T-fold;ApbE-like domains 0.9236 30 337 3.10.520.10
6nxjB00 Alpha Beta;Roll;T-fold;ApbE-like domains 0.9145 30 337 3.10.520.10
4xdtA00 Alpha Beta;Roll;T-fold;ApbE-like domains 0.8936 28 339 3.10.520.10
5mgyC00 Alpha Beta;Roll;T-fold;ApbE-like domains 0.8728 24 340 3.10.520.10
5mgyC00 Alpha Beta;Roll;T-fold;ApbE-like domains 0.8651 24 340 3.10.520.10
ID Description Score Start End GO Terms
AF-A0A258WMP2-F1-model_v4 FAD:protein FMN transferase (EC 2.7.1.180) (Flavin transferase) 0.9594 23 334 GO:0016020
GO:0016740
GO:0046872
AF-A0A4Q3UTB5-F1-model_v4 FAD:protein FMN transferase (EC 2.7.1.180) (Flavin transferase) 0.9594 89 172 GO:0016740
GO:0046872
AF-A0A1I1KU03-F1-model_v4 FAD:protein FMN transferase (EC 2.7.1.180) (Flavin transferase) 0.9591 22 340 GO:0016740
GO:0046872
AF-A0A7X9CKH6-F1-model_v4 FAD:protein FMN transferase (EC 2.7.1.180) (Flavin transferase) 0.9578 169 340 GO:0016740
GO:0046872
AF-A0A5C6RXH9-F1-model_v4 FAD:protein FMN transferase (EC 2.7.1.180) (Flavin transferase) 0.9563 25 339 GO:0005886
GO:0016740
GO:0046872

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pLDDT pTM Quality
89.57 0.86 High
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Predicted Structure (AlphaFold2)

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