F164947

General Info

Members Datasets Scaffolds Average Seq Length
135 111 113 280

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2915768154|2915773702
Length 304
Sequence QGPTVRRRRLASELRRLREAADLTIDEVSEKLECSASKVSRIETGHVGVTPRDARDMLELYGIAGDEQEALVQLAREARKRGWWHAYNEVFTGTFVGLEADASSLRAFQALLVPGLLQTERYARAVIRAMRPDAEEAEIRRRVAARMARQELLTDPSPPEYWAVIDEAVLHRTVDSAEVMAEQLYRMVTMAARANVTVQVVPFGAGAHPGMEGPFLVMGFPELADTDVVYVDSTSSGLYLEEPPDVRRYALMFDHLRAAALKPDDSVEVIAEAAGRFAELAALPDKPQYRDSGGFGPLEVPGNE

Samples

Sample ID Description Type Environment
1 2582580736 Prauserella sp. Am3 Isolate Unclassified
2 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
3 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
4 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
5 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
6 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
7 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
8 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
9 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
10 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
11 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
12 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
13 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
14 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
15 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
16 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
17 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
18 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
19 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
20 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
21 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
22 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
23 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
24 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
25 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
28 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
29 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
30 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
31 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
32 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
33 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
34 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
35 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
36 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
37 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
38 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
41 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
42 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
60 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
63 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
64 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
65 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
66 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
67 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
68 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
69 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
70 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
71 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
72 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
73 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
74 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
75 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
79 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
80 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
81 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
82 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
83 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
84 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
97 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
103 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
104 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
105 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
109 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
110 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
111 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.7
Metatranscriptomes 0
Isolates 16.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.96
Nodule 0
Rhizoplane 2.22
Rhizosphere 71.85
Stem 0
Stem Tuber 0.74
Unclassified 22.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10016031 3300003320 Bacteria 1832
2 rootL2_10077600 3300003322 Bacteria 2378
3 Ga0070670_100187316 3300005331 Bacteria 1797
4 Ga0068869_100165551 3300005334 Bacteria 1724
5 Ga0068868_100192110 3300005338 Bacteria 1698
6 Ga0068868_100328556 3300005338 Bacteria 1304
7 Ga0070668_100004875 3300005347 Bacteria 9944
8 Ga0070709_10121763 3300005434 Bacteria 1769
9 Ga0070714_100000779 3300005435 Bacteria 22609
10 Ga0070714_100063516 3300005435 Bacteria 3176
11 Ga0070713_100092807 3300005436 Bacteria 2600
12 Ga0070713_100222680 3300005436 Bacteria 1712
13 Ga0070711_100155920 3300005439 Bacteria 1726
14 Ga0070708_100026192 3300005445 Bacteria 4989
15 Ga0070708_100620545 3300005445 Bacteria 1019
16 Ga0070663_100002126 3300005455 Bacteria 11093
17 Ga0070678_100536344 3300005456 Bacteria 1037
18 Ga0070685_10058588 3300005466 Bacteria 2246
19 Ga0070706_100033930 3300005467 Bacteria 4711
20 Ga0070707_100065994 3300005468 Bacteria 3477
21 Ga0070698_100002525 3300005471 Bacteria 20157
22 Ga0070698_100017403 3300005471 Bacteria 7576
23 Ga0070699_100004420 3300005518 Bacteria 12426
24 Ga0070684_100353077 3300005535 Bacteria 1353
25 Ga0070684_100390814 3300005535 Bacteria 1282
26 Ga0068858_100014611 3300005842 Bacteria 7396
27 Ga0068862_100209917 3300005844 Bacteria 1759
28 Ga0081455_10000105 3300005937 Bacteria 93356
29 Ga0070717_10007715 3300006028 Bacteria 8007
30 Ga0070717_10132989 3300006028 Bacteria 2141
31 Ga0070717_10383077 3300006028 Bacteria 1261
32 Ga0070712_100039621 3300006175 Bacteria 3225
33 Ga0075429_100204279 3300006880 Bacteria 1731
34 Ga0157369_10094417 3300013105 Bacteria 3193
35 Ga0163163_10072433 3300014325 Bacteria 3435
36 Ga0157379_10075856 3300014968 Bacteria 3011
37 Ga0207692_10127118 3300025898 Bacteria 1435
38 Ga0207699_10108424 3300025906 Bacteria 1776
39 Ga0207684_10001950 3300025910 Bacteria 21357
40 Ga0207684_10025883 3300025910 Bacteria 5001
41 Ga0207646_10067948 3300025922 Bacteria 3182
42 Ga0207700_10047469 3300025928 Bacteria 3183
43 Ga0207700_10181410 3300025928 Bacteria 1763
44 Ga0207664_10005792 3300025929 Bacteria 8449
45 Ga0207664_10036254 3300025929 Bacteria 3811
46 Ga0207668_10001856 3300025972 Bacteria 12337
47 Ga0207668_10049304 3300025972 Bacteria 2894
48 Ga0207658_10034215 3300025986 Bacteria 3630
49 Ga0207678_10000442 3300026067 Bacteria 37718
50 Ga0207678_10158545 3300026067 Bacteria 1933
51 Ga0268266_10036502 3300028379 Bacteria 4184
52 Ga0268265_10189337 3300028380 Bacteria 1775
53 Ga0307515_10071369 3300028794 Bacteria 4707
54 Ga0307515_10213023 3300028794 Bacteria 1771
55 Ga0307512_10059547 3300030522 Bacteria 2962
56 Ga0265340_10004430 3300031247 Bacteria 7848
57 Ga0307513_10013783 3300031456 Bacteria 9912
58 Ga0307513_10026350 3300031456 Bacteria 6705
59 Ga0307509_10004642 3300031507 Bacteria 19626
60 Ga0307509_10144599 3300031507 Bacteria 2306
61 Ga0307518_10000376 3300031838 Bacteria 34192
62 Ga0307518_10027481 3300031838 Bacteria 4104
63 Ga0307415_100090973 3300032126 Bacteria 2209
64 Ga0307507_10035329 3300033179 Bacteria 5136
65 Ga0307510_10034631 3300033180 Bacteria 5651
66 Ga0373937_0249873 3300036401 Bacteria 1672
67 Ga0451795_1520000 3300041456 Bacteria 3878
68 Ga0451839_0349408 3300041496 Bacteria 2029
69 Ga0451849_0215367 3300041505 Bacteria 1888
70 Ga0451853_0758775 3300041512 Bacteria 2589
71 Ga0439458_0010466 3300042157 Bacteria 2069
72 Ga0466972_0025821 3300044658 Bacteria 2910
73 Ga0466963_0006091 3300044694 Bacteria 7113
74 Ga0466970_0111492 3300044765 Unclassified 1494
75 Ga0466957_0111295 3300044842 Bacteria 1737
76 Ga0466957_0114807 3300044842 Bacteria 1711
77 Ga0466967_0050281 3300045976 Bacteria 3649
78 Ga0466967_0121829 3300045976 Bacteria 2411
79 Ga0495651_0150968 3300046462 Bacteria 1675
80 Ga0495608_0057869 3300046511 Bacteria 2557
81 Ga0495680_0246025 3300047322 Bacteria 1269
82 Ga0496112_0869666 3300048915 Bacteria 824
83 Ga0496115_0117332 3300048918 Bacteria 2189
84 Ga0496126_0387955 3300048929 Bacteria 1135
85 Ga0501031_0153900 3300049568 Bacteria 1503
86 Ga0501032_0273939 3300049569 Bacteria 1093
87 Ga0501034_0026294 3300049571 Bacteria 5927
88 Ga0501036_0006366 3300049572 Bacteria 9580
89 Ga0501037_0015389 3300049573 Bacteria 5628
90 Ga0501037_0054798 3300049573 Bacteria 2916
91 Ga0501038_0016585 3300049574 Bacteria 6678
92 Ga0501038_0038773 3300049574 Bacteria 4170
93 Ga0501039_0089962 3300049575 Bacteria 2392
94 Ga0501043_0004533 3300049579 Bacteria 11294
95 Ga0501047_0001003 3300049581 Bacteria 28487
96 Ga0501048_0049725 3300049582 Bacteria 2988
97 Ga0501073_0171305 3300049589 Bacteria 1503
98 Ga0501073_0194936 3300049589 Unclassified 1401
99 Ga0501074_0001227 3300049590 Bacteria 16912
100 Ga0501236_000059 3300049670 Bacteria 9760
101 Ga0501080_0203705 3300049742 Bacteria 1816
102 Ga0501035_0196909 3300049822 Bacteria 1730
103 Ga0501044_0059116 3300049823 Bacteria 3929
104 Ga0501044_0214326 3300049823 Bacteria 1878
105 Ga0501045_0054324 3300049824 Bacteria 2928
106 nmdc:mga05p37_922422_c1 3300050507 Bacteria 939
107 nmdc:mga09592_199216_c1 3300050508 Bacteria 1734
108 nmdc:mga0qj67_250805_c1 3300050509 Unclassified 1436
109 nmdc:mga06r32_595875_c1 3300050510 Bacteria 1076
110 Ga0500594_0071442 3300053118 Bacteria 1021
111 Ga0500559_0002759 3300053136 Bacteria 8910
112 Ga0500616_0000937 3300053153 Bacteria 31832
113 Ga0500616_0008990 3300053153 Bacteria 6120

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_922422_c1 nmdc:mga05p37_922422_c1_226_918 227
2 3300050510 nmdc:mga06r32_595875_c1 nmdc:mga06r32_595875_c1_320_1012 227
3 3300048915 Ga0496112_0869666 Ga0496112_0869666_16_789 239
4 3300031838 Ga0307518_10027481 Ga0307518_100274814 246
5 3300042157 Ga0439458_0010466 Ga0439458_0010466_745_1506 251
6 3300049571 Ga0501034_0026294 Ga0501034_0026294_952_1737 260
7 3300049572 Ga0501036_0006366 Ga0501036_0006366_7827_8612 260
8 3300049573 Ga0501037_0054798 Ga0501037_0054798_1127_1912 260
9 3300049574 Ga0501038_0016585 Ga0501038_0016585_1003_1788 260
10 3300049579 Ga0501043_0004533 Ga0501043_0004533_9549_10334 260
11 3300049581 Ga0501047_0001003 Ga0501047_0001003_968_1753 260
12 3300049589 Ga0501073_0194936 Ga0501073_0194936_390_1175 260
13 3300049590 Ga0501074_0001227 Ga0501074_0001227_968_1753 260
14 3300049823 Ga0501044_0059116 Ga0501044_0059116_1124_1909 260
15 3300036401 Ga0373937_0249873 Ga0373937_0249873_203_997 261
16 3300044765 Ga0466970_0111492 Ga0466970_0111492_391_1188 261
17 3300046462 Ga0495651_0150968 Ga0495651_0150968_764_1558 261
18 3300046511 Ga0495608_0057869 Ga0495608_0057869_1314_2108 261
19 3300049569 Ga0501032_0273939 Ga0501032_0273939_69_869 266
20 3300049573 Ga0501037_0015389 Ga0501037_0015389_3093_3893 266
21 3300049574 Ga0501038_0038773 Ga0501038_0038773_1614_2414 266
22 3300049575 Ga0501039_0089962 Ga0501039_0089962_460_1260 266
23 3300049582 Ga0501048_0049725 Ga0501048_0049725_1882_2682 266
24 3300049589 Ga0501073_0171305 Ga0501073_0171305_332_1132 266
25 3300049742 Ga0501080_0203705 Ga0501080_0203705_521_1321 266
26 3300049822 Ga0501035_0196909 Ga0501035_0196909_598_1398 266
27 3300049823 Ga0501044_0214326 Ga0501044_0214326_969_1769 266
28 3300049824 Ga0501045_0054324 Ga0501045_0054324_790_1590 266
29 3300013105 Ga0157369_10094417 Ga0157369_100944174 267
30 3300041456 Ga0451795_1520000 Ga0451795_1520000_955_1770 268
31 3300041496 Ga0451839_0349408 Ga0451839_0349408_1039_1854 268
32 3300041505 Ga0451849_0215367 Ga0451849_0215367_355_1170 268
33 3300041512 Ga0451853_0758775 Ga0451853_0758775_177_992 268
34 3300053118 Ga0500594_0071442 Ga0500594_0071442_132_947 268
35 3300053153 Ga0500616_0000937 Ga0500616_0000937_4958_5773 268
36 3300053153 Ga0500616_0008990 Ga0500616_0008990_1029_1844 268
37 3300014325 Ga0163163_10072433 Ga0163163_100724333 269
38 iso_pu_bacteria 2751185782 2753268749 271
39 iso_pu_bacteria 2832004796 2832010309 271
40 iso_pu_bacteria 2866065130 2866067044 271
41 3300005434 Ga0070709_10121763 Ga0070709_101217633 272
42 3300005435 Ga0070714_100063516 Ga0070714_1000635164 272
43 3300005436 Ga0070713_100222680 Ga0070713_1002226803 272
44 3300005439 Ga0070711_100155920 Ga0070711_1001559203 272
45 3300006175 Ga0070712_100039621 Ga0070712_1000396213 272
46 3300025898 Ga0207692_10127118 Ga0207692_101271182 272
47 3300025906 Ga0207699_10108424 Ga0207699_101084241 272
48 3300025928 Ga0207700_10181410 Ga0207700_101814102 272
49 3300025929 Ga0207664_10036254 Ga0207664_100362543 272
50 iso_pu_bacteria 2869061728 2869063604 272
51 3300005338 Ga0068868_100328556 Ga0068868_1003285562 274
52 3300005535 Ga0070684_100353077 Ga0070684_1003530771 274
53 3300025986 Ga0207658_10034215 Ga0207658_100342153 274
54 3300028379 Ga0268266_10036502 Ga0268266_100365024 274
55 iso_pu_bacteria 2863067949 2863071016 274
56 3300026067 Ga0207678_10158545 Ga0207678_101585453 275
57 3300030522 Ga0307512_10059547 Ga0307512_100595471 275
58 iso_pu_bacteria 2775506925 2776370564 276
59 3300003322 rootL2_10077600 rootL2_100776003 277
60 3300005331 Ga0070670_100187316 Ga0070670_1001873162 277
61 3300005466 Ga0070685_10058588 Ga0070685_100585881 277
62 3300005842 Ga0068858_100014611 Ga0068858_1000146117 277
63 3300005844 Ga0068862_100209917 Ga0068862_1002099172 277
64 3300014968 Ga0157379_10075856 Ga0157379_100758562 277
65 3300025972 Ga0207668_10049304 Ga0207668_100493043 277
66 3300028380 Ga0268265_10189337 Ga0268265_101893373 277
67 3300031507 Ga0307509_10004642 Ga0307509_100046427 277
68 iso_pu_bacteria 8055066027 8055067931 277
69 iso_pu_bacteria 8055172936 8055174472 277
70 3300028794 Ga0307515_10213023 Ga0307515_102130231 278
71 3300031247 Ga0265340_10004430 Ga0265340_100044305 278
72 3300031456 Ga0307513_10013783 Ga0307513_100137832 278
73 iso_pu_bacteria 2795385472 2795796162 278
74 3300031507 Ga0307509_10144599 Ga0307509_101445993 279
75 3300048929 Ga0496126_0387955 Ga0496126_0387955_258_1109 279
76 3300049670 Ga0501236_000059 Ga0501236_000059_1130_1978 279
77 iso_pu_bacteria 2791354901 2791913527 279
78 iso_pu_bacteria 2795385470 2795783215 279
79 iso_pu_bacteria 8056207758 8056212229 279
80 3300050509 nmdc:mga0qj67_250805_c1 nmdc:mga0qj67_250805_c1_178_1074 280
81 iso_pu_bacteria 2767802112 2768644481 280
82 iso_pu_bacteria 2899370129 2899372256 280
83 3300005334 Ga0068869_100165551 Ga0068869_1001655512 281
84 3300005445 Ga0070708_100026192 Ga0070708_1000261925 281
85 3300005467 Ga0070706_100033930 Ga0070706_1000339303 281
86 3300005468 Ga0070707_100065994 Ga0070707_1000659943 281
87 3300005471 Ga0070698_100002525 Ga0070698_10000252519 281
88 3300005518 Ga0070699_100004420 Ga0070699_1000044206 281
89 3300006028 Ga0070717_10132989 Ga0070717_101329893 281
90 3300025910 Ga0207684_10025883 Ga0207684_100258834 281
91 3300025922 Ga0207646_10067948 Ga0207646_100679485 281
92 3300049568 Ga0501031_0153900 Ga0501031_0153900_513_1361 281
93 3300005435 Ga0070714_100000779 Ga0070714_1000007793 282
94 3300005436 Ga0070713_100092807 Ga0070713_1000928074 282
95 3300005445 Ga0070708_100620545 Ga0070708_1006205451 282
96 3300005471 Ga0070698_100017403 Ga0070698_1000174033 282
97 3300006028 Ga0070717_10007715 Ga0070717_100077152 282
98 3300006880 Ga0075429_100204279 Ga0075429_1002042792 282
99 3300025910 Ga0207684_10001950 Ga0207684_1000195016 282
100 3300025928 Ga0207700_10047469 Ga0207700_100474692 282
101 3300025929 Ga0207664_10005792 Ga0207664_100057924 282
102 3300031456 Ga0307513_10026350 Ga0307513_100263504 282
103 3300032126 Ga0307415_100090973 Ga0307415_1000909734 282
104 3300044694 Ga0466963_0006091 Ga0466963_0006091_1399_2295 282
105 3300044842 Ga0466957_0111295 Ga0466957_0111295_124_1020 282
106 3300047322 Ga0495680_0246025 Ga0495680_0246025_388_1251 282
107 3300050508 nmdc:mga09592_199216_c1 nmdc:mga09592_199216_c1_449_1297 282
108 3300053136 Ga0500559_0002759 Ga0500559_0002759_5633_6481 282
109 iso_pu_bacteria 2582580736 2583153343 282
110 3300005937 Ga0081455_10000105 Ga0081455_100001057 283
111 3300044842 Ga0466957_0114807 Ga0466957_0114807_160_1062 283
112 3300045976 Ga0466967_0121829 Ga0466967_0121829_583_1473 283
113 3300048918 Ga0496115_0117332 Ga0496115_0117332_667_1668 283
114 iso_pu_bacteria 2866612099 2866618510 283
115 iso_pu_bacteria 2899359706 2899367011 285
116 3300045976 Ga0466967_0050281 Ga0466967_0050281_1510_2388 286
117 iso_pu_bacteria 2808606522 2809588178 289
118 3300006028 Ga0070717_10383077 Ga0070717_103830771 291
119 iso_pu_bacteria 2585427649 2586062641 293
120 3300031838 Ga0307518_10000376 Ga0307518_1000037618 295
121 iso_pu_bacteria 2915768154 2915773702 295
122 iso_pu_bacteria 2917736166 2917741732 295
123 iso_pu_bacteria 8003314358 8003316773 296
124 3300003320 rootH2_10016031 rootH2_100160312 300
125 3300005338 Ga0068868_100192110 Ga0068868_1001921101 300
126 3300005347 Ga0070668_100004875 Ga0070668_1000048755 300
127 3300005455 Ga0070663_100002126 Ga0070663_1000021263 300
128 3300005456 Ga0070678_100536344 Ga0070678_1005363441 300
129 3300005535 Ga0070684_100390814 Ga0070684_1003908141 300
130 3300025972 Ga0207668_10001856 Ga0207668_100018568 300
131 3300026067 Ga0207678_10000442 Ga0207678_100004429 300
132 3300028794 Ga0307515_10071369 Ga0307515_100713691 300
133 3300033179 Ga0307507_10035329 Ga0307507_100353294 300
134 3300033180 Ga0307510_10034631 Ga0307510_100346314 300
135 3300044658 Ga0466972_0025821 Ga0466972_0025821_211_1116 300

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19054

DUF5753

Domain of unknown function (DUF5753)

92

272

0.99

PF13560

HTH_31

Helix-turn-helix domain

9

71

0.97

PF01381

HTH_3

Helix-turn-helix

14

68

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1utx-assembly1.cif.gz_B regulation of cytolysin expression by enterococcus faecalis: role of cylr2 0.9356 17 68
7t8i-assembly1.cif.gz_B crystal structure of the immr transcriptional regulator dna-binding domain of bacillus subtilis 0.9333 14 75
3omt-assembly1.cif.gz_B putative antitoxin component, chu_2935 protein, from xre family from prevotella buccae. 0.9319 18 68
2gzu-assembly1.cif.gz_B high-resolution structure determination of the cylr2 homodimer using intermonomer distances from paramagnetic relaxation enhancement and nmr dipolar couplings 0.9192 18 68
2xj3-assembly1.cif.gz_A high resolution structure of the t55c mutant of cylr2. 0.9157 18 68
ID Description Score Start End Superfamily
3omtB00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9317 18 68 1.10.260.40
2gzuB00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9192 18 68 1.10.260.40
2gzuA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9165 17 66 1.10.260.40
1y7yA00 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9013 12 75 1.10.260.40
af_Q57720_1_65_1.10.260.40 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.8964 17 68 1.10.260.40
ID Description Score Start End GO Terms
AF-H5XBE8-F1-model_v4 Helix-turn-helix protein 0.9818 1 286 GO:0003677
AF-A0A5D0TQD4-F1-model_v4 DUF5753 domain-containing protein 0.976 102 282
AF-H5XBE8-F1-model_v4 Helix-turn-helix protein 0.975 1 286 GO:0003677
AF-A0A6B3I5M7-F1-model_v4 Transcriptional regulator 0.9696 118 282
AF-A0A076N1I7-F1-model_v4 Helix-turn-helix protein 0.9691 1 247 GO:0003677

Feature Viewer

pLDDT pTM Quality
87.49 0.8 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map