F164880

General Info

Members Datasets Scaffolds Average Seq Length
135 109 81 749

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2554235005|2554256179
Length 812
Sequence RPTRKPPTTRTAQPVVTTLEAPETKAPEAPEAVSGATGAPKAAAGAPAANAEAADKAVTKAAAKAPAGAASGAAPAKPAAKRPPRPRDGAADGVPAHPLQGADRARLLAGEHHDPHGLLGVHPVPDGVAFRALRPHALAVAVVLPDGSRHALHDDGDGLFSGVLPLPGVPDGYRLLVSYEEAELEVHDPYRFLPALGELDLHLIREGRHEELWTALGARVMTHQGVSGTRFTVWAPNARGVRLAGDWTFWDGTGLPMRSLGASGVWELFVPGIDEGTLYKFEVVGPDGHHSLRADPMARRTQCPPETASVVTASHHEWRDAEWMARRGERPVHEAPFSVYEVHLPSWRPGLSYRELADVLPAYVKDLGFTHVELMPVAEHPYSPSWGYQVTSYYAPTARLGTPDDFKYLVDRLHQAGIGVLVDWVPAHFPKDDWALARFDGTPLYEHPDPRRAEHPDWGTLEFDYGRTEVRNFLVANAVYWCQEFHIDGLRVDAVASMLYLDYSREYGEWAPNEYGGRENFDAVRFMQEMNATVYRRCPGVVTIAEESTAWEGVTRPTDQGGLGFGLKWNMGWMHDSLVYVSKEPVHRKYHHNEMTFSMVYAYSENYVLPISHDEVVHGKQALVSKMPGDWWQRRANHRAYLGFMWAHPGKQLLFMGQEFAQGAEWSEAHGPEWWLLADDYHSAGDHRGVRDLVRDLNAVYAATPALWERDTVPEGFQWALGDAADDNVFAFLRYDAQGSPLLAVSNFSPVVRHDYRLWAPESVPAWSEVLNTDAARYGGSGVRNEGPLKREPDGVRMTLPPLATVWFRPAG

Samples

Sample ID Description Type Environment
1 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
2 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
3 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
4 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
5 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
6 2643221670 Streptomyces sp. Root431 Isolate Unclassified
7 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
8 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
9 2643221714 Streptomyces sp. Root264 Isolate Unclassified
10 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
11 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
12 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
13 2808606448 Streptomyces sp. 193411 Isolate Unclassified
14 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
15 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
16 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
17 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
18 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
19 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
20 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
21 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
22 2862574272 Streptomyces sp. AcE210 Isolate Nodule
23 2867475112 Streptomyces sp. TM32 Isolate Unclassified
24 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
25 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
26 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
27 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
28 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
29 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
30 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
31 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
32 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
33 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
34 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
35 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
36 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
37 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
38 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
39 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
40 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
41 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
42 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
43 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
44 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
45 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
52 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
59 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
60 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
61 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
64 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
65 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
66 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
67 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
68 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
72 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
75 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
97 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
98 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
99 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
100 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
101 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
102 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
103 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
104 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
105 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
106 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
107 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
108 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
109 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60
Metatranscriptomes 0
Isolates 40

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.15
Nodule 0.74
Rhizoplane 0.74
Rhizosphere 71.85
Stem 0
Stem Tuber 0
Unclassified 18.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000021 3300003187 Bacteria 227826
2 JGI25151J46595_10000787 3300003187 Bacteria 25593
3 Ga0055526_1000115 3300003771 Bacteria 71263
4 Ga0070714_100042306 3300005435 Bacteria 3848
5 Ga0068853_100001387 3300005539 Bacteria 17507
6 Ga0070665_100058910 3300005548 Bacteria 3850
7 Ga0105245_10000455 3300009098 Bacteria 37524
8 Ga0114129_10110742 3300009147 Bacteria 3789
9 Ga0105237_10000333 3300009545 Bacteria 66671
10 Ga0105239_10002942 3300010375 Bacteria 21252
11 Ga0209676_1000100 3300025292 Bacteria 229621
12 Ga0209025_1000010 3300025294 Bacteria 986612
13 Ga0209025_1000328 3300025294 Bacteria 105594
14 Ga0209564_1000432 3300025295 Bacteria 72805
15 Ga0209758_1001764 3300025297 Bacteria 24009
16 Ga0209758_1017088 3300025297 Bacteria 3639
17 Ga0207426_1000235 3300025302 Bacteria 126601
18 Ga0207671_10000361 3300025914 Bacteria 64792
19 Ga0207639_10000752 3300026041 Bacteria 22089
20 Ga0268266_10000086 3300028379 Bacteria 199443
21 Ga0265325_10002793 3300031241 Bacteria 11662
22 Ga0307513_10026840 3300031456 Bacteria 6625
23 Ga0265313_10000223 3300031595 Bacteria 61143
24 Ga0316576_10000670 3300031727 Bacteria 16691
25 Ga0316584_0010339 3300036712 Bacteria 6516
26 Ga0395899_0052852 3300037312 Bacteria 3010
27 Ga0439436_0000311 3300041404 Bacteria 11872
28 Ga0439433_0000731 3300041999 Bacteria 6420
29 Ga0450894_000120 3300042131 Bacteria 13493
30 Ga0450906_000633 3300042145 Bacteria 7522
31 Ga0466972_0018714 3300044658 Bacteria 3463
32 Ga0466961_0007108 3300044693 Bacteria 7121
33 Ga0466963_0002102 3300044694 Bacteria 11004
34 Ga0466970_0002412 3300044765 Bacteria 9032
35 Ga0495603_0001451 3300046455 Bacteria 13790
36 Ga0495603_0010575 3300046455 Bacteria 5589
37 Ga0495645_0012043 3300046543 Bacteria 6095
38 Ga0495685_004645 3300047447 Bacteria 4451
39 Ga0496117_0037249 3300048920 Bacteria 3626
40 Ga0501031_0019982 3300049568 Bacteria 4367
41 Ga0501032_0021167 3300049569 Bacteria 4523
42 Ga0501033_0010395 3300049570 Bacteria 7138
43 Ga0501033_0052921 3300049570 Bacteria 3008
44 Ga0501033_0057372 3300049570 Bacteria 2878
45 Ga0501034_0000295 3300049571 Bacteria 88435
46 Ga0501034_0001581 3300049571 Bacteria 29672
47 Ga0501036_0047102 3300049572 Bacteria 3651
48 Ga0501036_0054987 3300049572 Bacteria 3372
49 Ga0501037_0014885 3300049573 Bacteria 5722
50 Ga0501037_0024786 3300049573 Bacteria 4436
51 Ga0501038_0032654 3300049574 Bacteria 4590
52 Ga0501039_0028743 3300049575 Bacteria 4281
53 Ga0501039_0038650 3300049575 Bacteria 3684
54 Ga0501043_0001183 3300049579 Bacteria 22974
55 Ga0501043_0005876 3300049579 Bacteria 9872
56 Ga0501043_0059226 3300049579 Bacteria 3005
57 Ga0501046_0026852 3300049580 Bacteria 4702
58 Ga0501046_0055227 3300049580 Bacteria 3122
59 Ga0501047_0000363 3300049581 Bacteria 51477
60 Ga0501047_0007361 3300049581 Bacteria 10351
61 Ga0501047_0019418 3300049581 Bacteria 6520
62 Ga0501047_0021528 3300049581 Bacteria 6191
63 Ga0501047_0142625 3300049581 Bacteria 2273
64 Ga0501048_0000031 3300049582 Bacteria 65561
65 Ga0501048_0005495 3300049582 Bacteria 9643
66 Ga0501068_0023325 3300049584 Bacteria 3624
67 Ga0501069_0022760 3300049585 Bacteria 3412
68 Ga0501070_0001016 3300049586 Bacteria 25196
69 Ga0501070_0021148 3300049586 Bacteria 5460
70 Ga0501073_0025758 3300049589 Bacteria 4214
71 Ga0501073_0027189 3300049589 Bacteria 4094
72 Ga0501079_0006181 3300049741 Bacteria 8983
73 Ga0501080_0000279 3300049742 Bacteria 38549
74 Ga0501080_0063382 3300049742 Bacteria 3440
75 Ga0501035_0015790 3300049822 Bacteria 6970
76 Ga0501035_0026215 3300049822 Bacteria 5334
77 Ga0501044_0001849 3300049823 Bacteria 24605
78 Ga0501044_0009462 3300049823 Bacteria 10609
79 Ga0501044_0043500 3300049823 Bacteria 4665
80 nmdc:mga06z11_993_c1 3300050494 Bacteria 10374
81 Ga0501084_0047443 3300054114 Bacteria 3597

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037312 Ga0395899_0052852 Ga0395899_0052852_1155_2957 595
2 3300049571 Ga0501034_0001581 Ga0501034_0001581_14_2122 673
3 iso_pu_bacteria 2547132111 2547413029 675
4 3300044765 Ga0466970_0002412 Ga0466970_0002412_4721_6919 688
5 3300009545 Ga0105237_10000333 Ga0105237_1000033360 693
6 3300010375 Ga0105239_10002942 Ga0105239_1000294218 693
7 3300025914 Ga0207671_10000361 Ga0207671_1000036137 693
8 3300028379 Ga0268266_10000086 Ga0268266_1000008671 693
9 3300005539 Ga0068853_100001387 Ga0068853_1000013872 699
10 3300026041 Ga0207639_10000752 Ga0207639_100007522 699
11 iso_pu_bacteria 2990044586 2990047332 701
12 iso_pu_bacteria 2919493220 2919497251 702
13 iso_pu_bacteria 2919543075 2919547397 702
14 iso_pu_bacteria 2923525760 2923527158 702
15 iso_pu_bacteria 2990059506 2990066123 703
16 3300005435 Ga0070714_100042306 Ga0070714_1000423062 704
17 3300050494 nmdc:mga06z11_993_c1 nmdc:mga06z11_993_c1_21_2201 704
18 iso_pu_bacteria 2554235005 2554256179 704
19 iso_pu_bacteria 2643221678 2644441720 704
20 iso_pu_bacteria 2643221714 2644630875 704
21 iso_pu_bacteria 2808606359 2808846744 704
22 iso_pu_bacteria 2919468124 2919473765 704
23 iso_pu_bacteria 2946072368 2946072943 704
24 3300031241 Ga0265325_10002793 Ga0265325_100027932 705
25 3300031595 Ga0265313_10000223 Ga0265313_1000022320 705
26 3300049568 Ga0501031_0019982 Ga0501031_0019982_1202_3355 705
27 3300049570 Ga0501033_0010395 Ga0501033_0010395_2023_4176 705
28 3300049570 Ga0501033_0052921 Ga0501033_0052921_136_2340 705
29 3300049571 Ga0501034_0000295 Ga0501034_0000295_19712_21865 705
30 3300049572 Ga0501036_0047102 Ga0501036_0047102_650_2803 705
31 3300049573 Ga0501037_0024786 Ga0501037_0024786_1788_3941 705
32 3300049574 Ga0501038_0032654 Ga0501038_0032654_723_2876 705
33 3300049575 Ga0501039_0038650 Ga0501039_0038650_930_3083 705
34 3300049579 Ga0501043_0001183 Ga0501043_0001183_2215_4368 705
35 3300049579 Ga0501043_0059226 Ga0501043_0059226_264_2417 705
36 3300049580 Ga0501046_0055227 Ga0501046_0055227_749_2902 705
37 3300049581 Ga0501047_0000363 Ga0501047_0000363_13028_15181 705
38 3300049581 Ga0501047_0142625 Ga0501047_0142625_44_2197 705
39 3300049582 Ga0501048_0000031 Ga0501048_0000031_10595_12748 705
40 3300049584 Ga0501068_0023325 Ga0501068_0023325_218_2371 705
41 3300049585 Ga0501069_0022760 Ga0501069_0022760_396_2549 705
42 3300049586 Ga0501070_0001016 Ga0501070_0001016_22931_25084 705
43 3300049586 Ga0501070_0021148 Ga0501070_0021148_345_2498 705
44 3300049589 Ga0501073_0025758 Ga0501073_0025758_975_3128 705
45 3300049589 Ga0501073_0027189 Ga0501073_0027189_788_2941 705
46 3300049741 Ga0501079_0006181 Ga0501079_0006181_6318_8471 705
47 3300049742 Ga0501080_0000279 Ga0501080_0000279_14867_17020 705
48 3300049742 Ga0501080_0063382 Ga0501080_0063382_803_2956 705
49 3300049823 Ga0501044_0001849 Ga0501044_0001849_2763_4916 705
50 3300054114 Ga0501084_0047443 Ga0501084_0047443_1089_3242 705
51 iso_pu_bacteria 2811994879 2812361640 705
52 iso_pu_bacteria 2852635781 2852641652 705
53 iso_pu_bacteria 2862281513 2862282296 705
54 iso_pu_bacteria 2946064051 2946064525 705
55 3300044694 Ga0466963_0002102 Ga0466963_0002102_6570_8825 708
56 3300049569 Ga0501032_0021167 Ga0501032_0021167_2045_4252 708
57 3300049572 Ga0501036_0054987 Ga0501036_0054987_131_2338 708
58 3300049573 Ga0501037_0014885 Ga0501037_0014885_3387_5594 708
59 3300049575 Ga0501039_0028743 Ga0501039_0028743_30_2237 708
60 3300049579 Ga0501043_0005876 Ga0501043_0005876_3692_5899 708
61 3300049580 Ga0501046_0026852 Ga0501046_0026852_2406_4613 708
62 3300049581 Ga0501047_0021528 Ga0501047_0021528_2046_4253 708
63 3300049582 Ga0501048_0005495 Ga0501048_0005495_1704_3911 708
64 3300049822 Ga0501035_0015790 Ga0501035_0015790_3475_5682 708
65 3300042131 Ga0450894_000120 Ga0450894_000120_6573_8744 709
66 3300042145 Ga0450906_000633 Ga0450906_000633_3711_5882 709
67 3300046455 Ga0495603_0010575 Ga0495603_0010575_91_2505 709
68 3300009147 Ga0114129_10110742 Ga0114129_101107422 710
69 3300049570 Ga0501033_0057372 Ga0501033_0057372_506_2707 710
70 3300049581 Ga0501047_0007361 Ga0501047_0007361_3951_6152 710
71 3300049823 Ga0501044_0043500 Ga0501044_0043500_260_2452 711
72 3300031727 Ga0316576_10000670 Ga0316576_1000067014 712
73 3300044658 Ga0466972_0018714 Ga0466972_0018714_981_3218 712
74 3300049581 Ga0501047_0019418 Ga0501047_0019418_3783_6011 713
75 3300049822 Ga0501035_0026215 Ga0501035_0026215_1817_4045 713
76 iso_pu_bacteria 2844533157 2844534716 713
77 3300005548 Ga0070665_100058910 Ga0070665_1000589102 714
78 3300025297 Ga0209758_1017088 Ga0209758_10170882 714
79 3300031456 Ga0307513_10026840 Ga0307513_100268404 714
80 3300041404 Ga0439436_0000311 Ga0439436_0000311_4380_7379 714
81 3300041999 Ga0439433_0000731 Ga0439433_0000731_3226_6207 714
82 3300044693 Ga0466961_0007108 Ga0466961_0007108_1122_3365 714
83 3300046455 Ga0495603_0001451 Ga0495603_0001451_3672_5936 714
84 3300046543 Ga0495645_0012043 Ga0495645_0012043_1952_4204 714
85 3300047447 Ga0495685_004645 Ga0495685_004645_2049_4313 714
86 3300049823 Ga0501044_0009462 Ga0501044_0009462_4504_6933 714
87 iso_pu_bacteria 2547132111 2547408344 714
88 iso_pu_bacteria 2643221587 2643943972 714
89 iso_pu_bacteria 2643221670 2644386956 714
90 iso_pu_bacteria 2643221677 2644434709 714
91 iso_pu_bacteria 2784132148 2784590462 714
92 iso_pu_bacteria 2808606448 2809234134 714
93 iso_pu_bacteria 2808606982 2811844348 714
94 iso_pu_bacteria 2862574272 2862574745 714
95 iso_pu_bacteria 2873151551 2873158062 714
96 iso_pu_bacteria 2918501144 2918506562 714
97 iso_pu_bacteria 2935390628 2935391944 714
98 iso_pu_bacteria 2954002825 2954005545 714
99 iso_pu_bacteria 3006486233 3006490609 714
100 iso_pu_bacteria 3006493962 3006500171 714
101 iso_pu_bacteria 8008574985 8008577111 714
102 iso_pu_bacteria 8023623736 8023629605 714
103 iso_pu_bacteria 8054160619 8054164928 714
104 iso_pu_bacteria 8056829672 8056832255 714
105 3300003187 JGI25151J46595_10000787 JGI25151J46595_1000078714 715
106 3300025294 Ga0209025_1000328 Ga0209025_100032868 715
107 3300025297 Ga0209758_1001764 Ga0209758_100176413 715
108 3300025302 Ga0207426_1000235 Ga0207426_100023543 715
109 iso_pu_bacteria 2582581312 2585297627 715
110 iso_pu_bacteria 2616644941 2616903302 715
111 iso_pu_bacteria 2791355406 2793985131 715
112 iso_pu_bacteria 2811994917 2812478706 715
113 iso_pu_bacteria 2852635781 2852641069 715
114 iso_pu_bacteria 2862507626 2862512635 715
115 iso_pu_bacteria 2867475112 2867478844 715
116 iso_pu_bacteria 2912757875 2912762811 715
117 iso_pu_bacteria 2997451912 2997452921 715
118 iso_pu_bacteria 8025478263 8025478743 715
119 iso_pu_bacteria 8025530807 8025536220 715
120 iso_pu_bacteria 8047893842 8047896028 715
121 iso_pu_bacteria 8048127548 8048132198 715
122 iso_pu_bacteria 8048356638 8048362907 715
123 iso_pu_bacteria 8048369669 8048373052 715
124 iso_pu_bacteria 8048379754 8048381986 715
125 iso_pu_bacteria 8056667051 8056672499 715
126 iso_pu_bacteria 2821443989 2821447260 717
127 3300025292 Ga0209676_1000100 Ga0209676_100010080 718
128 iso_pu_bacteria 2997600082 2997604162 718
129 3300009098 Ga0105245_10000455 Ga0105245_1000045512 720
130 3300036712 Ga0316584_0010339 Ga0316584_0010339_2771_4993 720
131 3300003771 Ga0055526_1000115 Ga0055526_100011545 725
132 3300025295 Ga0209564_1000432 Ga0209564_100043228 725
133 3300003187 JGI25151J46595_10000021 JGI25151J46595_10000021198 726
134 3300025294 Ga0209025_1000010 Ga0209025_1000010299 726
135 3300048920 Ga0496117_0037249 Ga0496117_0037249_650_2848 726

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02922

CBM_48

Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

215

298

0.95

PF02806

Alpha-amylase_C

Alpha amylase, C-terminal all-beta domain

719

811

0.93

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

358

443

0.92

PF22019

GlgB_N

alpha-1,4-glucan branching enzyme GlgB, N-terminal domain

100

190

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5e6z-assembly3.cif.gz_C crystal structure of ecoli branching enzyme with beta cyclodextrin 0.9557 118 726
4lq1-assembly3.cif.gz_C crystal structure of e.coli branching enzyme in complex with maltohexaose 0.9557 118 726
1m7x-assembly2.cif.gz_B the x-ray crystallographic structure of branching enzyme 0.9555 118 726
5e6y-assembly3.cif.gz_C crystal structure of e.coli branching enzyme in complex with alpha cyclodextrin 0.9554 118 726
1m7x-assembly1.cif.gz_A the x-ray crystallographic structure of branching enzyme 0.9548 118 726
ID Description Score Start End Superfamily
3k1dA03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9788 620 720 2.60.40.1180
af_P07762_103_221_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9784 103 221 2.60.40.10
af_P07762_230_612_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9755 236 608 3.20.20.80
5gquA04 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.9734 617 723 2.60.40.1180
af_P07762_103_221_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9623 103 221 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A523ASD6-F1-model_v4 1,4-alpha-glucan branching enzyme 0.9956 650 720 GO:0003824
GO:0005975
GO:0043169
AF-A0A6J6Q023-F1-model_v4 Unannotated protein 0.9928 598 722 GO:0003824
GO:0005975
GO:0043169
AF-A0A6L5DCW3-F1-model_v4 deleted 0.9898 309 423
AF-A0A381XKF8-F1-model_v4 Glycoside hydrolase family 13 N-terminal domain-containing protein 0.9843 102 182 GO:0003844
GO:0004553
GO:0005829
GO:0005978
AF-A0A7C6PIW5-F1-model_v4 deleted 0.9839 613 722

Feature Viewer

pLDDT pTM Quality
89.37 0.91 High
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Predicted Structure (AlphaFold2)

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