F163377

General Info

Members Datasets Scaffolds Average Seq Length
135 107 108 747

Family's Representative Sequence

Representative Sequence 3300021388|Ga0213875_10001270|Ga0213875_1000127016
Length 794
Sequence MSEVIIPPPSSVSPINPQSVPGAMAAPPVTVHMATASPGSLPAGVTAIRRLLRRLRGVMAGSGSAQERLDRIVRVVAAEMVAEVCSAYVMRAGEVLELFATKGLRPEAVHRTRLRVGEGLVGVIAATGRPLALADAQTHPDFAYRPETGEEIYHSLMGVPILRGGRVLGVLVVQNRTPRHYTEDEIEVAQTIGMIVAELVASGELVNPLEMAQSRGGVSVSIRLDGIKLNGGLAVGPAVLHEPKVVIRQVVAEDVEAEQTRLRDAVEAMQYAIDRLVDASRKLGPGEHRDIIEAYRMFAADRGWLGRITEAVRSGLTAEAAVQKVRDETRSRMLQISDPYLRERLYDLEDLANRLQQYLTGQAPGLDETDAPQDFILVAHSMGPAELLDYADRRLRGLILEEGSPTAHVSIVARAFDIPVAGRVPDATRKIETGDIVIVDGEHGAVLIRPRADVQHSIQTAIEARSRRRAYYDTLRDSPAITSDGVPIRLLLNAGLLIDLSQLRLTGAEGVGLFRTEIPLLTRNAYPDVADQTEFYRRAYEQAEGRPIVFRTLDIGGDKVLPYLANSPEENPAMGWRAIRIGLDRPAMLRQQLRALLRAAGGHELLIKFPMIAEIAEFEAARRLVDMEVTRLAAEGHAAPCSIKLGVMLEVPSLLWQLPALLQRVDFMSIGTNDLAQFLYACDRGNPRLADRYDLLSAPMIALFREVIAQCATAGKPLSMCGEMAGSPLDAMVLIGLGFRTLSLSATSLGPVKAMLRSLDAGHMADYLSEIGTRPDHSLRAWVHAYARDHGVNV

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2713897090 Paracoccus sphaerophysae HAMBI 3106 Isolate Nodule
5 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
6 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
7 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
8 2834578030 Paracoccus thiocyanatus SST Isolate Unclassified
9 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
10 2840878972 Albibacillus kandeliae J95 Isolate Rhizosphere
11 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
12 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
13 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
14 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
15 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
16 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
17 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
18 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
19 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
20 2899275550 Paracoccus hibiscisoli CCTCC AB2016182 Isolate Rhizosphere
21 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
22 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
23 3000405567 Rhodobacteraceae bacterium LNNU 3342 Isolate Rhizosphere
24 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
25 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
26 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
27 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
28 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
29 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
30 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
31 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
32 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
33 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
34 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
35 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
36 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
37 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
40 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
48 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
49 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
66 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
67 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
73 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
74 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
83 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
87 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
90 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
91 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
95 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
96 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
97 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
98 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
99 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
100 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
101 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
102 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
103 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
104 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
105 641522639 Methylobacterium sp. 4-46 Isolate Nodule
106 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
107 8057132660 Paracoccus rhizosphaerae LMG 21293 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80
Metatranscriptomes 0
Isolates 20

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.11
Nodule 6.67
Rhizoplane 2.96
Rhizosphere 62.96
Stem 0
Stem Tuber 0.74
Unclassified 15.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000018 3300003187 Bacteria 238438
2 JGI25151J46595_10000394 3300003187 Bacteria 45418
3 Ga0055526_1000861 3300003771 Bacteria 22617
4 Ga0055524_1000071 3300003775 Bacteria 127466
5 Ga0070710_10016031 3300005437 Bacteria 3804
6 Ga0070694_100013174 3300005444 Bacteria 5161
7 Ga0070662_100033061 3300005457 Bacteria 3640
8 Ga0070681_10002811 3300005458 Bacteria 16069
9 Ga0070681_10003556 3300005458 Bacteria 14615
10 Ga0070707_100025335 3300005468 Bacteria 5626
11 Ga0070698_100052826 3300005471 Bacteria 4131
12 Ga0070698_100063787 3300005471 Bacteria 3714
13 Ga0070699_100052624 3300005518 Bacteria 3522
14 Ga0070679_100001540 3300005530 Bacteria 20569
15 Ga0070684_100080773 3300005535 Bacteria 2877
16 Ga0070697_100045099 3300005536 Bacteria 3573
17 Ga0081540_1012641 3300005983 Bacteria 5538
18 Ga0081540_1017430 3300005983 Bacteria 4448
19 Ga0070717_10003023 3300006028 Bacteria 11987
20 Ga0070717_10076755 3300006028 Bacteria 2797
21 Ga0070712_100010650 3300006175 Bacteria 5808
22 Ga0114129_10068011 3300009147 Bacteria 4968
23 Ga0105238_10029674 3300009551 Bacteria 5570
24 Ga0157370_10007649 3300013104 Bacteria 11727
25 Ga0157380_10020412 3300014326 Bacteria 4952
26 Ga0213872_10000369 3300021361 Bacteria 37812
27 Ga0213872_10008807 3300021361 Bacteria 4870
28 Ga0213876_10008082 3300021384 Bacteria 5703
29 Ga0213875_10000114 3300021388 Bacteria 91363
30 Ga0213875_10001270 3300021388 Bacteria 16944
31 Ga0213875_10003770 3300021388 Bacteria 8538
32 Ga0228598_1003352 3300024227 Bacteria 3448
33 Ga0209130_1001484 3300025284 Bacteria 15280
34 Ga0209675_1000926 3300025291 Bacteria 18722
35 Ga0209676_1000097 3300025292 Bacteria 237203
36 Ga0209025_1000010 3300025294 Bacteria 986612
37 Ga0209025_1000114 3300025294 Bacteria 218921
38 Ga0209564_1000034 3300025295 Bacteria 444284
39 Ga0209758_1001638 3300025297 Bacteria 25429
40 Ga0209050_1015916 3300025298 Bacteria 3117
41 Ga0209256_1000026 3300025299 Bacteria 432835
42 Ga0207426_1000181 3300025302 Bacteria 158308
43 Ga0207684_10027575 3300025910 Bacteria 4838
44 Ga0207707_10008112 3300025912 Bacteria 9118
45 Ga0207707_10015042 3300025912 Bacteria 6737
46 Ga0207693_10005636 3300025915 Bacteria 10413
47 Ga0207693_10039305 3300025915 Bacteria 3725
48 Ga0207652_10003254 3300025921 Bacteria 13471
49 Ga0207700_10008467 3300025928 Bacteria 6377
50 Ga0207665_10010701 3300025939 Bacteria 6025
51 Ga0268264_10073696 3300028381 Bacteria 2898
52 Ga0265328_10000008 3300031239 Bacteria 208282
53 Ga0265328_10000068 3300031239 Bacteria 55710
54 Ga0265339_10023733 3300031249 Bacteria 3543
55 Ga0265331_10000007 3300031250 Bacteria 331074
56 Ga0265331_10001399 3300031250 Bacteria 17709
57 Ga0307408_100033892 3300031548 Bacteria 3571
58 Ga0265313_10001448 3300031595 Bacteria 22152
59 Ga0265314_10028083 3300031711 Bacteria 4200
60 Ga0307416_100020182 3300032002 Bacteria 4748
61 Ga0373934_0014934 3300035086 Unclassified 2943
62 Ga0373931_0058807 3300035691 Bacteria 2066
63 Ga0373947_0024929 3300035725 Bacteria 3488
64 Ga0373937_0043947 3300036401 Unclassified 4080
65 Ga0316584_0007639 3300036712 Bacteria 7418
66 Ga0436364_0169683 3300037853 Bacteria 86149
67 Ga0436364_0703871 3300037853 Bacteria 7115
68 Ga0436364_1400870 3300037853 Bacteria 43676
69 Ga0436364_1521220 3300037853 Bacteria 27310
70 Ga0400483_098239 3300039062 Bacteria 7805
71 Ga0436365_0124167 3300039437 Bacteria 14566
72 Ga0436360_0202909 3300039438 Bacteria 3770
73 Ga0436360_0405737 3300039438 Bacteria 2266
74 Ga0436360_1242860 3300039438 Bacteria 3496
75 Ga0436361_0205083 3300039447 Bacteria 3400
76 Ga0436361_0236388 3300039447 Bacteria 8409
77 Ga0436361_0256470 3300039447 Bacteria 9132
78 Ga0436361_0278308 3300039447 Bacteria 12964
79 Ga0436361_0440749 3300039447 Bacteria 3587
80 Ga0436361_0705571 3300039447 Bacteria 3089
81 Ga0436361_0984914 3300039447 Bacteria 17471
82 Ga0436363_1542138 3300039450 Bacteria 5496
83 Ga0436362_0496542 3300039453 Bacteria 15357
84 Ga0451576_0000400 3300045051 Bacteria 101055
85 Ga0451576_0065552 3300045051 Bacteria 3781
86 Ga0466958_0000099 3300045836 Bacteria 27306
87 Ga0495667_0011260 3300046559 Bacteria 6054
88 Ga0495667_0016902 3300046559 Bacteria 4927
89 Ga0495600_0020619 3300046809 Bacteria 4215
90 Ga0495680_0022113 3300047322 Bacteria 5310
91 Ga0496104_0000156 3300048907 Bacteria 61788
92 Ga0496104_0000439 3300048907 Bacteria 36162
93 Ga0496105_0000240 3300048908 Bacteria 36853
94 Ga0496110_0006162 3300048913 Bacteria 9460
95 Ga0496119_0001440 3300048922 Bacteria 28686
96 Ga0501034_0000340 3300049571 Bacteria 81287
97 Ga0501074_0051246 3300049590 Bacteria 2979
98 Ga0501079_0036947 3300049741 Bacteria 3763
99 Ga0501081_0037582 3300049743 Bacteria 3304
100 nmdc:mga08x19_23891_c1 3300050514 Bacteria 3794
101 nmdc:mga0a205_89650_c1 3300050515 Bacteria 2972
102 Ga0495601_0009671 3300053077 Bacteria 5706
103 Ga0495595_0003810 3300053084 Bacteria 6004
104 Ga0495595_0008994 3300053084 Bacteria 4122
105 Ga0495619_0003454 3300053085 Bacteria 10194
106 Ga0500642_0000432 3300053130 Bacteria 13535
107 Ga0501084_0067473 3300054114 Bacteria 2994
108 Ga0501082_0040202 3300060353 Bacteria 4034

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039447 Ga0436361_0705571 Ga0436361_0705571_1239_3047 575
2 3300039438 Ga0436360_1242860 Ga0436360_1242860_1517_3436 612
3 3300035691 Ga0373931_0058807 Ga0373931_0058807_31_2046 638
4 3300039438 Ga0436360_0405737 Ga0436360_0405737_183_2228 650
5 3300039438 Ga0436360_0202909 Ga0436360_0202909_939_3155 680
6 3300045051 Ga0451576_0065552 Ga0451576_0065552_1327_3588 698
7 3300003187 JGI25151J46595_10000394 JGI25151J46595_100003945 704
8 3300005437 Ga0070710_10016031 Ga0070710_100160312 704
9 3300005983 Ga0081540_1012641 Ga0081540_10126412 704
10 3300025284 Ga0209130_1001484 Ga0209130_10014842 704
11 3300025294 Ga0209025_1000114 Ga0209025_100011451 704
12 3300025297 Ga0209758_1001638 Ga0209758_100163817 704
13 3300025302 Ga0207426_1000181 Ga0207426_1000181126 704
14 3300025939 Ga0207665_10010701 Ga0207665_100107014 704
15 3300031548 Ga0307408_100033892 Ga0307408_1000338921 705
16 iso_pu_bacteria 2545555834 2545674513 706
17 iso_pu_bacteria 641522639 641644884 706
18 3300005457 Ga0070662_100033061 Ga0070662_1000330612 708
19 3300009147 Ga0114129_10068011 Ga0114129_100680113 708
20 3300050515 nmdc:mga0a205_89650_c1 nmdc:mga0a205_89650_c1_89_2359 708
21 3300035086 Ga0373934_0014934 Ga0373934_0014934_412_2622 710
22 3300036401 Ga0373937_0043947 Ga0373937_0043947_1563_3773 710
23 3300037853 Ga0436364_1521220 Ga0436364_1521220_12657_14867 710
24 3300046559 Ga0495667_0016902 Ga0495667_0016902_954_3164 710
25 3300053084 Ga0495595_0008994 Ga0495595_0008994_1851_4061 710
26 3300025915 Ga0207693_10039305 Ga0207693_100393052 714
27 3300039450 Ga0436363_1542138 Ga0436363_1542138_472_2694 714
28 3300005458 Ga0070681_10002811 Ga0070681_100028119 715
29 3300025912 Ga0207707_10015042 Ga0207707_100150423 715
30 iso_pu_bacteria 2834578030 2834578789 716
31 iso_pu_bacteria 3000017691 3000019527 716
32 3300021361 Ga0213872_10000369 Ga0213872_1000036924 717
33 3300031249 Ga0265339_10023733 Ga0265339_100237332 717
34 3300031250 Ga0265331_10001399 Ga0265331_100013995 717
35 3300031595 Ga0265313_10001448 Ga0265313_1000144811 717
36 3300031711 Ga0265314_10028083 Ga0265314_100280832 717
37 3300039447 Ga0436361_0278308 Ga0436361_0278308_3229_5499 717
38 iso_pu_bacteria 2840878972 2840879080 717
39 iso_pu_bacteria 2854681122 2854682135 717
40 iso_pu_bacteria 2855020534 2855020755 717
41 iso_pu_bacteria 2898795034 2898798778 717
42 iso_pu_bacteria 2899275550 2899276591 717
43 iso_pu_bacteria 2919679072 2919679930 717
44 iso_pu_bacteria 3000405567 3000409279 717
45 iso_pu_bacteria 8057132660 8057133972 717
46 3300039062 Ga0400483_098239 Ga0400483_098239_3526_5763 718
47 3300049741 Ga0501079_0036947 Ga0501079_0036947_653_2920 718
48 3300049743 Ga0501081_0037582 Ga0501081_0037582_46_2313 718
49 3300054114 Ga0501084_0067473 Ga0501084_0067473_468_2735 718
50 3300060353 Ga0501082_0040202 Ga0501082_0040202_326_2593 718
51 iso_pu_bacteria 2899259804 2899262226 718
52 iso_pu_bacteria 2713897090 2715501414 719
53 3300021361 Ga0213872_10008807 Ga0213872_100088072 720
54 3300039447 Ga0436361_0236388 Ga0436361_0236388_792_3065 720
55 3300039447 Ga0436361_0984914 Ga0436361_0984914_7972_10245 720
56 3300049571 Ga0501034_0000340 Ga0501034_0000340_11320_13566 721
57 3300045051 Ga0451576_0000400 Ga0451576_0000400_47023_49296 722
58 iso_pu_bacteria 3003665799 3003666382 724
59 iso_pu_bacteria 643348564 643597888 724
60 3300009551 Ga0105238_10029674 Ga0105238_100296743 725
61 3300025292 Ga0209676_1000097 Ga0209676_100009714 725
62 3300025298 Ga0209050_1015916 Ga0209050_10159162 725
63 iso_pu_bacteria 2738541281 2738746063 725
64 iso_pu_bacteria 2738543032 2739355293 725
65 iso_pu_bacteria 2842698319 2842702302 725
66 3300028381 Ga0268264_10073696 Ga0268264_100736962 726
67 3300035725 Ga0373947_0024929 Ga0373947_0024929_553_2871 726
68 iso_pu_bacteria 2508501050 2508734241 726
69 iso_pu_bacteria 2508501114 2509079164 726
70 iso_pu_bacteria 2821443989 2821448973 726
71 iso_pu_bacteria 2835312727 2835315573 726
72 iso_pu_bacteria 2842333319 2842335653 726
73 iso_pu_bacteria 2844533157 2844538162 726
74 iso_pu_bacteria 2884298095 2884301598 726
75 iso_pu_bacteria 2894232714 2894232910 726
76 3300005458 Ga0070681_10003556 Ga0070681_1000355612 727
77 3300005530 Ga0070679_100001540 Ga0070679_10000154019 727
78 3300013104 Ga0157370_10007649 Ga0157370_100076495 727
79 3300025912 Ga0207707_10008112 Ga0207707_100081124 727
80 3300025921 Ga0207652_10003254 Ga0207652_100032547 727
81 3300032002 Ga0307416_100020182 Ga0307416_1000201822 727
82 3300036712 Ga0316584_0007639 Ga0316584_0007639_3910_6237 727
83 3300049590 Ga0501074_0051246 Ga0501074_0051246_628_2889 727
84 3300005444 Ga0070694_100013174 Ga0070694_1000131742 728
85 3300005468 Ga0070707_100025335 Ga0070707_1000253355 728
86 3300005471 Ga0070698_100052826 Ga0070698_1000528262 728
87 3300005471 Ga0070698_100063787 Ga0070698_1000637872 728
88 3300005518 Ga0070699_100052624 Ga0070699_1000526242 728
89 3300005535 Ga0070684_100080773 Ga0070684_1000807732 728
90 3300005536 Ga0070697_100045099 Ga0070697_1000450992 728
91 3300005983 Ga0081540_1017430 Ga0081540_10174303 728
92 3300006028 Ga0070717_10003023 Ga0070717_1000302311 728
93 3300006028 Ga0070717_10076755 Ga0070717_100767552 728
94 3300006175 Ga0070712_100010650 Ga0070712_1000106503 728
95 3300021384 Ga0213876_10008082 Ga0213876_100080822 728
96 3300021388 Ga0213875_10000114 Ga0213875_1000011421 728
97 3300021388 Ga0213875_10001270 Ga0213875_1000127016 728
98 3300021388 Ga0213875_10003770 Ga0213875_100037706 728
99 3300024227 Ga0228598_1003352 Ga0228598_10033522 728
100 3300025910 Ga0207684_10027575 Ga0207684_100275752 728
101 3300025915 Ga0207693_10005636 Ga0207693_1000563610 728
102 3300025928 Ga0207700_10008467 Ga0207700_100084672 728
103 3300037853 Ga0436364_0169683 Ga0436364_0169683_8679_10952 728
104 3300037853 Ga0436364_0703871 Ga0436364_0703871_3396_5669 728
105 3300037853 Ga0436364_1400870 Ga0436364_1400870_13007_15280 728
106 3300039437 Ga0436365_0124167 Ga0436365_0124167_6242_8560 728
107 3300039447 Ga0436361_0205083 Ga0436361_0205083_1048_3318 728
108 3300039447 Ga0436361_0256470 Ga0436361_0256470_1048_3318 728
109 3300039447 Ga0436361_0440749 Ga0436361_0440749_500_2773 728
110 3300039453 Ga0436362_0496542 Ga0436362_0496542_2001_4319 728
111 3300045836 Ga0466958_0000099 Ga0466958_0000099_22684_24957 728
112 3300046559 Ga0495667_0011260 Ga0495667_0011260_244_2580 728
113 3300046809 Ga0495600_0020619 Ga0495600_0020619_244_2580 728
114 3300047322 Ga0495680_0022113 Ga0495680_0022113_667_3003 728
115 3300050514 nmdc:mga08x19_23891_c1 nmdc:mga08x19_23891_c1_1288_3558 728
116 3300053077 Ga0495601_0009671 Ga0495601_0009671_750_3086 728
117 3300053084 Ga0495595_0003810 Ga0495595_0003810_873_3209 728
118 3300053085 Ga0495619_0003454 Ga0495619_0003454_4523_6859 728
119 3300053130 Ga0500642_0000432 Ga0500642_0000432_11228_13498 728
120 3300031239 Ga0265328_10000068 Ga0265328_1000006850 729
121 3300031250 Ga0265331_10000007 Ga0265331_10000007303 729
122 3300048907 Ga0496104_0000156 Ga0496104_0000156_29430_31694 729
123 3300048907 Ga0496104_0000439 Ga0496104_0000439_13866_16130 729
124 3300048908 Ga0496105_0000240 Ga0496105_0000240_4495_6759 729
125 3300048913 Ga0496110_0006162 Ga0496110_0006162_2640_4904 729
126 3300048922 Ga0496119_0001440 Ga0496119_0001440_6471_8735 729
127 3300003187 JGI25151J46595_10000018 JGI25151J46595_10000018154 730
128 3300003771 Ga0055526_1000861 Ga0055526_10008619 730
129 3300003775 Ga0055524_1000071 Ga0055524_100007172 730
130 3300014326 Ga0157380_10020412 Ga0157380_100204123 730
131 3300025291 Ga0209675_1000926 Ga0209675_100092617 730
132 3300025294 Ga0209025_1000010 Ga0209025_1000010161 730
133 3300025295 Ga0209564_1000034 Ga0209564_1000034352 730
134 3300025299 Ga0209256_1000026 Ga0209256_1000026340 730
135 3300031239 Ga0265328_10000008 Ga0265328_10000008165 730

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02896

PEP-utilizers_C

PEP-utilising enzyme, PEP-binding domain

469

761

0.98

PF00391

PEP-utilizers

PEP-utilising enzyme, mobile domain

371

444

0.96

PF05524

PEP-utilisers_N

PEP-utilising enzyme, N-terminal

225

344

0.91

PF01590

GAF

GAF domain

64

200

0.9

PF13185

GAF_2

GAF domain

62

201

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ci6-assembly1.cif.gz_A crystal structure of the gaf domain from acinetobacter phosphoenolpyruvate-protein phosphotransferase 0.9638 11 162
6vu0-assembly1.cif.gz_B crystal structure of the c-terminal domain of enzyme i of the bacterial phosphotransferase system from the escherichia coli enzyme 0.9369 414 722
6v9k-assembly1.cif.gz_B crystal structure of the hybrid c-terminal domain of enzyme i of the bacterial phosphotransferase system formed by hybridizing the scaffold of the escherichia coli enzyme with the active site loops from the thermoanaerobacter tengcongensis enzyme 0.9364 414 722
2xz7-assembly1.cif.gz_A crystal structure of the phosphoenolpyruvate-binding domain of enzyme i in complex with phosphoenolpyruvate from the thermoanaerobacter tengcongensis pep-sugar phosphotransferase system (pts) 0.9335 408 725
6vbj-assembly1.cif.gz_B crystal structure of the hybrid c-terminal domain of enzyme i of the bacterial phosphotransferase system formed by hybridizing the scaffold of the thermoanaerobacter tengcongensis enzyme with the active site loops from the escherichia coli enzyme 0.9332 414 725
ID Description Score Start End Superfamily
2hwgB01 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Phosphohistidine domain 0.936 315 386 3.50.30.10
3ci6A00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9357 6 162 3.30.450.40
af_Q9CXW3_1_48_4.10.860.10 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;UVR domain 0.9329 264 306 4.10.860.10
2xz9B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9308 410 727 3.20.20.60
af_P77439_345_680_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9224 399 722 3.20.20.60
ID Description Score Start End GO Terms
AF-A0A352GQ32-F1-model_v4 Peptidase 0.975 574 730 GO:0016772
AF-A0A352GQ32-F1-model_v4 Peptidase 0.9689 574 730 GO:0016772
AF-A0A5R2MYR2-F1-model_v4 Peptidase 0.9679 535 656 GO:0016772
AF-A0A258JL07-F1-model_v4 deleted 0.9607 470 730
AF-A0A5R2MYR2-F1-model_v4 Peptidase 0.9602 535 656 GO:0016772

Feature Viewer

pLDDT pTM Quality
80.55 0.58 Medium
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Predicted Structure (AlphaFold2)

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