F162731

General Info

Members Datasets Scaffolds Average Seq Length
135 96 135 342

Family's Representative Sequence

Representative Sequence 3300005937|Ga0081455_10000314|Ga0081455_1000031417
Length 397
Sequence MNVGSSAMSKTFAHPFDRQISRLELKQRLFSFAREIGFDSCRIADCGSPPHKEEFRKWLGEGGHGEMNYMERGQEKRCDPQKVLPGACSIAVLALNYFQGKTKEGGTSAATGRIARYAWGDDYHDLIAGKLDKIDKFLRGFGGQQKYYVDTGPVLERDYAAEAGTGWHGKSTMLINQRLGTWFFLAEVLTTLELPPDEPVPARCGTCERCIRACPTGAILAPHRLDARRCISYLTIELKGSIPIGLRPMIGDRIFGCDDCLDACPWNRFAQVSRESAFSARPSTVGIPLRDYLRLSDEDFRVLFRKSPIKRIKRRGFLRNVCVALGNVGDPSDLPALEQAAADPEPLIAEHAHWSIQQIRVRHMPGPRPIREEDRPRSGERQLTKSKPIAGRISELL

Samples

Sample ID Description Type Environment
1 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
2 3300002126 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025290 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (version 2) Metagenome Rhizosphere
50 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
69 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
70 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
83 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
84 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
87 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
91 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
95 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
96 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.44
Rhizosphere 91.85
Stem 0
Stem Tuber 0
Unclassified 3.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNXas_1000022 3300000545 Bacteria 32122
2 JGI24035J26624_1000780 3300002126 Unclassified 3003
3 JGI25406J46586_10000003 3300003203 Bacteria 161718
4 rootL2_10082212 3300003322 Bacteria 11279
5 Ga0065712_10007182 3300005290 Bacteria 3618
6 Ga0065712_10120479 3300005290 Unclassified 1661
7 Ga0065715_10002825 3300005293 Bacteria 5904
8 Ga0070658_10014323 3300005327 Bacteria 6361
9 Ga0070658_10197895 3300005327 Unclassified 1695
10 Ga0070676_10131203 3300005328 Unclassified 1585
11 Ga0070690_100013449 3300005330 Bacteria 4836
12 Ga0070666_10053015 3300005335 Unclassified 2735
13 Ga0070666_10267504 3300005335 Unclassified 1213
14 Ga0070680_100220624 3300005336 Unclassified 1600
15 Ga0070675_100042853 3300005354 Unclassified 3698
16 Ga0070675_100054639 3300005354 Unclassified 3286
17 Ga0070675_100066015 3300005354 Unclassified 2992
18 Ga0070671_100208257 3300005355 Unclassified 1658
19 Ga0070673_100036483 3300005364 Bacteria 3737
20 Ga0070673_100051493 3300005364 Bacteria 3225
21 Ga0070688_100050878 3300005365 Bacteria 2583
22 Ga0070667_100097504 3300005367 Unclassified 2536
23 Ga0070708_100031799 3300005445 Bacteria 4571
24 Ga0070678_100059040 3300005456 Unclassified 2818
25 Ga0070678_100352628 3300005456 Unclassified 1265
26 Ga0070662_100147551 3300005457 Unclassified 1828
27 Ga0070681_10040739 3300005458 Bacteria 4653
28 Ga0070685_10043732 3300005466 Bacteria 2562
29 Ga0070706_100012035 3300005467 Bacteria 8027
30 Ga0070706_100133762 3300005467 Bacteria 2315
31 Ga0070706_100295798 3300005467 Bacteria 1511
32 Ga0070707_100037055 3300005468 Bacteria 4654
33 Ga0070698_100003474 3300005471 Bacteria 17340
34 Ga0070698_100028871 3300005471 Bacteria 5758
35 Ga0070699_100033532 3300005518 Bacteria 4436
36 Ga0070679_100054570 3300005530 Bacteria 3979
37 Ga0070697_100005407 3300005536 Bacteria 9837
38 Ga0070697_100056831 3300005536 Bacteria 3184
39 Ga0070697_100101091 3300005536 Bacteria 2395
40 Ga0070665_100016600 3300005548 Bacteria 7380
41 Ga0070664_100339274 3300005564 Unclassified 1365
42 Ga0068858_100233703 3300005842 Unclassified 1743
43 Ga0068860_100001571 3300005843 Bacteria 24603
44 Ga0081455_10000314 3300005937 Bacteria 63484
45 Ga0081455_10011210 3300005937 Bacteria 9020
46 Ga0081455_10018193 3300005937 Bacteria 6707
47 Ga0081455_10029758 3300005937 Bacteria 4974
48 Ga0081455_10059589 3300005937 Bacteria 3222
49 Ga0081455_10072380 3300005937 Bacteria 2854
50 Ga0081455_10074391 3300005937 Unclassified 2806
51 Ga0081539_10000077 3300005985 Bacteria 228125
52 Ga0070717_10037636 3300006028 Bacteria 3929
53 Ga0070712_100285039 3300006175 Bacteria 1332
54 Ga0068871_100111493 3300006358 Bacteria 2301
55 Ga0105240_10000022 3300009093 Bacteria 387911
56 Ga0114129_10019739 3300009147 Bacteria 9592
57 Ga0114129_10076794 3300009147 Bacteria 4649
58 Ga0105237_10004368 3300009545 Bacteria 16385
59 Ga0105239_10115725 3300010375 Unclassified 2975
60 Ga0105239_10199717 3300010375 Unclassified 2240
61 Ga0157369_10088409 3300013105 Bacteria 3307
62 Ga0157374_10000041 3300013296 Bacteria 150386
63 Ga0157374_10038210 3300013296 Bacteria 4411
64 Ga0157378_10077580 3300013297 Unclassified 2995
65 Ga0157372_10500923 3300013307 Unclassified 1416
66 Ga0157375_10032301 3300013308 Bacteria 4963
67 Ga0157375_10046910 3300013308 Bacteria 4215
68 Ga0163163_10230401 3300014325 Bacteria 1901
69 Ga0157376_10059228 3300014969 Unclassified 3211
70 Ga0157376_10068291 3300014969 Unclassified 3010
71 Ga0213876_10087216 3300021384 Bacteria 1652
72 Ga0207673_1000337 3300025290 Bacteria 4709
73 Ga0207673_1001887 3300025290 Unclassified 2339
74 Ga0207697_10000154 3300025315 Bacteria 34024
75 Ga0207697_10002394 3300025315 Bacteria 9769
76 Ga0207645_10125474 3300025907 Unclassified 1668
77 Ga0207705_10122221 3300025909 Unclassified 1933
78 Ga0207684_10010800 3300025910 Bacteria 8015
79 Ga0207684_10013890 3300025910 Bacteria 6955
80 Ga0207684_10284186 3300025910 Unclassified 1427
81 Ga0207707_10033066 3300025912 Bacteria 4526
82 Ga0207695_10000022 3300025913 Bacteria 659090
83 Ga0207693_10015348 3300025915 Bacteria 6146
84 Ga0207646_10000130 3300025922 Bacteria 101961
85 Ga0207646_10079845 3300025922 Unclassified 2925
86 Ga0207646_10083871 3300025922 Unclassified 2850
87 Ga0207706_10125379 3300025933 Bacteria 2258
88 Ga0207706_10194841 3300025933 Unclassified 1778
89 Ga0207691_10058217 3300025940 Unclassified 3515
90 Ga0207667_10024572 3300025949 Bacteria 6612
91 Ga0207651_10035316 3300025960 Unclassified 3248
92 Ga0207651_10165697 3300025960 Unclassified 1737
93 Ga0207658_10039843 3300025986 Bacteria 3392
94 Ga0207658_10340315 3300025986 Unclassified 1304
95 Ga0207702_10284805 3300026078 Unclassified 1563
96 Ga0207641_10011784 3300026088 Bacteria 7179
97 Ga0207683_10010873 3300026121 Bacteria 7762
98 Ga0207683_10097596 3300026121 Unclassified 2621
99 Ga0268266_10073696 3300028379 Unclassified 2963
100 Ga0268264_10001055 3300028381 Bacteria 27419
101 Ga0268264_10268944 3300028381 Bacteria 1592
102 Ga0307513_10069829 3300031456 Unclassified 3675
103 Ga0373955_0045747 3300035172 Bacteria 2363
104 Ga0373947_0115383 3300035725 Bacteria 1702
105 Ga0395900_0016785 3300037418 Bacteria 7468
106 Ga0395900_0043999 3300037418 Bacteria 4602
107 Ga0395900_0132321 3300037418 Bacteria 2556
108 Ga0395898_0005648 3300037466 Bacteria 13485
109 Ga0395905_0163909 3300037471 Bacteria 2089
110 Ga0395901_0007774 3300038443 Bacteria 10819
111 Ga0395901_0235308 3300038443 Unclassified 1912
112 Ga0436365_0134402 3300039437 Bacteria 2157
113 Ga0436365_0411111 3300039437 Bacteria 11166
114 Ga0495592_0209002 3300046454 Unclassified 1312
115 Ga0495582_0077344 3300046473 Bacteria 1846
116 Ga0495628_0010496 3300046516 Bacteria 7865
117 Ga0495630_0096563 3300046517 Bacteria 2234
118 Ga0495652_0018044 3300046529 Bacteria 6294
119 Ga0495645_0027961 3300046543 Bacteria 4096
120 Ga0495634_0006511 3300046642 Bacteria 8872
121 Ga0495599_0005721 3300046678 Bacteria 7457
122 Ga0495646_0037689 3300046680 Bacteria 2989
123 Ga0495604_0024601 3300047317 Bacteria 4804
124 Ga0495680_0181735 3300047322 Unclassified 1518
125 Ga0495602_0026528 3300048088 Bacteria 5586
126 Ga0496102_0263640 3300048905 Bacteria 1624
127 Ga0496105_0039406 3300048908 Unclassified 3895
128 Ga0496106_0158324 3300048909 Bacteria 1790
129 Ga0496109_0148279 3300048912 Unclassified 2196
130 Ga0496112_0097221 3300048915 Unclassified 2915
131 Ga0496112_0155803 3300048915 Bacteria 2251
132 Ga0501080_0005607 3300049742 Bacteria 11220
133 nmdc:mga05p37_143710_c1 3300050507 Unclassified 2922
134 Ga0495601_0003033 3300053077 Bacteria 9574
135 Ga0495619_0047252 3300053085 Bacteria 2834

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0263640 Ga0496102_0263640_11_961 267
2 3300046473 Ga0495582_0077344 Ga0495582_0077344_44_1111 304
3 3300025986 Ga0207658_10340315 Ga0207658_103403152 305
4 3300031456 Ga0307513_10069829 Ga0307513_100698294 308
5 3300009147 Ga0114129_10076794 Ga0114129_100767944 311
6 3300014325 Ga0163163_10230401 Ga0163163_102304011 311
7 3300048908 Ga0496105_0039406 Ga0496105_0039406_1125_2225 311
8 3300048909 Ga0496106_0158324 Ga0496106_0158324_233_1333 311
9 3300050507 nmdc:mga05p37_143710_c1 nmdc:mga05p37_143710_c1_1075_2145 311
10 3300005536 Ga0070697_100101091 Ga0070697_1001010913 314
11 3300047322 Ga0495680_0181735 Ga0495680_0181735_413_1483 315
12 3300009545 Ga0105237_10004368 Ga0105237_100043685 316
13 3300005471 Ga0070698_100028871 Ga0070698_1000288711 318
14 3300005536 Ga0070697_100056831 Ga0070697_1000568314 321
15 3300005937 Ga0081455_10074391 Ga0081455_100743913 321
16 3300021384 Ga0213876_10087216 Ga0213876_100872162 321
17 3300039437 Ga0436365_0134402 Ga0436365_0134402_530_1546 321
18 3300006175 Ga0070712_100285039 Ga0070712_1002850391 322
19 3300005457 Ga0070662_100147551 Ga0070662_1001475511 324
20 3300005467 Ga0070706_100012035 Ga0070706_1000120358 324
21 3300005467 Ga0070706_100295798 Ga0070706_1002957982 324
22 3300005471 Ga0070698_100003474 Ga0070698_10000347415 324
23 3300005536 Ga0070697_100005407 Ga0070697_1000054072 324
24 3300006028 Ga0070717_10037636 Ga0070717_100376363 324
25 3300025922 Ga0207646_10000130 Ga0207646_10000130105 324
26 3300025933 Ga0207706_10125379 Ga0207706_101253792 324
27 3300037418 Ga0395900_0132321 Ga0395900_0132321_715_1776 325
28 3300005327 Ga0070658_10014323 Ga0070658_100143232 326
29 3300005468 Ga0070707_100037055 Ga0070707_1000370555 326
30 3300025922 Ga0207646_10079845 Ga0207646_100798452 326
31 3300028381 Ga0268264_10268944 Ga0268264_102689442 326
32 3300038443 Ga0395901_0235308 Ga0395901_0235308_395_1525 326
33 3300046454 Ga0495592_0209002 Ga0495592_0209002_97_1236 326
34 3300003203 JGI25406J46586_10000003 JGI25406J46586_10000003102 328
35 3300005985 Ga0081539_10000077 Ga0081539_10000077172 328
36 3300010375 Ga0105239_10199717 Ga0105239_101997172 328
37 3300025949 Ga0207667_10024572 Ga0207667_100245726 328
38 3300009093 Ga0105240_10000022 Ga0105240_1000002249 329
39 3300025913 Ga0207695_10000022 Ga0207695_10000022470 329
40 3300037418 Ga0395900_0043999 Ga0395900_0043999_1121_2209 329
41 3300037466 Ga0395898_0005648 Ga0395898_0005648_7166_8254 329
42 3300038443 Ga0395901_0007774 Ga0395901_0007774_6013_7101 329
43 3300053085 Ga0495619_0047252 Ga0495619_0047252_201_1271 329
44 3300025910 Ga0207684_10013890 Ga0207684_100138904 330
45 3300035172 Ga0373955_0045747 Ga0373955_0045747_1198_2268 330
46 3300046516 Ga0495628_0010496 Ga0495628_0010496_4207_5277 330
47 3300046529 Ga0495652_0018044 Ga0495652_0018044_4939_6009 330
48 3300046543 Ga0495645_0027961 Ga0495645_0027961_170_1240 330
49 3300046678 Ga0495599_0005721 Ga0495599_0005721_3393_4463 330
50 3300046680 Ga0495646_0037689 Ga0495646_0037689_1862_2932 330
51 3300047317 Ga0495604_0024601 Ga0495604_0024601_544_1614 330
52 3300048088 Ga0495602_0026528 Ga0495602_0026528_1736_2806 330
53 3300053077 Ga0495601_0003033 Ga0495601_0003033_1940_3010 330
54 3300005518 Ga0070699_100033532 Ga0070699_1000335324 331
55 3300005937 Ga0081455_10029758 Ga0081455_100297582 331
56 3300005290 Ga0065712_10007182 Ga0065712_100071824 332
57 3300005293 Ga0065715_10002825 Ga0065715_100028253 332
58 3300005335 Ga0070666_10267504 Ga0070666_102675041 332
59 3300005336 Ga0070680_100220624 Ga0070680_1002206241 332
60 3300005354 Ga0070675_100066015 Ga0070675_1000660152 332
61 3300005364 Ga0070673_100051493 Ga0070673_1000514932 332
62 3300005365 Ga0070688_100050878 Ga0070688_1000508782 332
63 3300005456 Ga0070678_100352628 Ga0070678_1003526281 332
64 3300005458 Ga0070681_10040739 Ga0070681_100407392 332
65 3300005466 Ga0070685_10043732 Ga0070685_100437321 332
66 3300005530 Ga0070679_100054570 Ga0070679_1000545704 332
67 3300005564 Ga0070664_100339274 Ga0070664_1003392742 332
68 3300005937 Ga0081455_10018193 Ga0081455_100181933 332
69 3300013105 Ga0157369_10088409 Ga0157369_100884091 332
70 3300013308 Ga0157375_10046910 Ga0157375_100469102 332
71 3300014969 Ga0157376_10068291 Ga0157376_100682912 332
72 3300025290 Ga0207673_1001887 Ga0207673_10018872 332
73 3300025315 Ga0207697_10000154 Ga0207697_100001548 332
74 3300025910 Ga0207684_10010800 Ga0207684_100108004 332
75 3300025912 Ga0207707_10033066 Ga0207707_100330664 332
76 3300025960 Ga0207651_10165697 Ga0207651_101656972 332
77 3300026078 Ga0207702_10284805 Ga0207702_102848052 332
78 3300026121 Ga0207683_10097596 Ga0207683_100975962 332
79 3300048915 Ga0496112_0155803 Ga0496112_0155803_339_1400 332
80 3300005354 Ga0070675_100042853 Ga0070675_1000428533 333
81 3300006358 Ga0068871_100111493 Ga0068871_1001114932 333
82 3300014969 Ga0157376_10059228 Ga0157376_100592282 333
83 3300035725 Ga0373947_0115383 Ga0373947_0115383_39_1109 333
84 3300046517 Ga0495630_0096563 Ga0495630_0096563_718_1788 333
85 3300046642 Ga0495634_0006511 Ga0495634_0006511_2963_4033 333
86 3300002126 JGI24035J26624_1000780 JGI24035J26624_10007802 334
87 3300005290 Ga0065712_10120479 Ga0065712_101204791 334
88 3300005327 Ga0070658_10197895 Ga0070658_101978952 334
89 3300005328 Ga0070676_10131203 Ga0070676_101312032 334
90 3300005330 Ga0070690_100013449 Ga0070690_1000134494 334
91 3300005335 Ga0070666_10053015 Ga0070666_100530152 334
92 3300005355 Ga0070671_100208257 Ga0070671_1002082571 334
93 3300005364 Ga0070673_100036483 Ga0070673_1000364832 334
94 3300005367 Ga0070667_100097504 Ga0070667_1000975042 334
95 3300005456 Ga0070678_100059040 Ga0070678_1000590402 334
96 3300005548 Ga0070665_100016600 Ga0070665_1000166005 334
97 3300005842 Ga0068858_100233703 Ga0068858_1002337032 334
98 3300005937 Ga0081455_10011210 Ga0081455_100112104 334
99 3300010375 Ga0105239_10115725 Ga0105239_101157252 334
100 3300013297 Ga0157378_10077580 Ga0157378_100775802 334
101 3300013307 Ga0157372_10500923 Ga0157372_105009231 334
102 3300013308 Ga0157375_10032301 Ga0157375_100323014 334
103 3300025290 Ga0207673_1000337 Ga0207673_10003373 334
104 3300025315 Ga0207697_10002394 Ga0207697_100023948 334
105 3300025907 Ga0207645_10125474 Ga0207645_101254742 334
106 3300025909 Ga0207705_10122221 Ga0207705_101222212 334
107 3300025933 Ga0207706_10194841 Ga0207706_101948412 334
108 3300025940 Ga0207691_10058217 Ga0207691_100582172 334
109 3300025960 Ga0207651_10035316 Ga0207651_100353162 334
110 3300025986 Ga0207658_10039843 Ga0207658_100398434 334
111 3300026121 Ga0207683_10010873 Ga0207683_100108735 334
112 3300028379 Ga0268266_10073696 Ga0268266_100736963 334
113 3300048912 Ga0496109_0148279 Ga0496109_0148279_599_1669 334
114 3300048915 Ga0496112_0097221 Ga0496112_0097221_109_1179 334
115 3300005937 Ga0081455_10059589 Ga0081455_100595892 335
116 3300037418 Ga0395900_0016785 Ga0395900_0016785_3424_4518 337
117 3300037471 Ga0395905_0163909 Ga0395905_0163909_751_1845 337
118 3300005445 Ga0070708_100031799 Ga0070708_1000317994 338
119 3300005843 Ga0068860_100001571 Ga0068860_1000015717 338
120 3300028381 Ga0268264_10001055 Ga0268264_100010557 338
121 3300009147 Ga0114129_10019739 Ga0114129_100197394 339
122 3300025922 Ga0207646_10083871 Ga0207646_100838712 339
123 3300013296 Ga0157374_10038210 Ga0157374_100382103 341
124 3300026088 Ga0207641_10011784 Ga0207641_100117846 346
125 3300013296 Ga0157374_10000041 Ga0157374_1000004150 347
126 3300003322 rootL2_10082212 rootL2_100822123 348
127 3300005937 Ga0081455_10072380 Ga0081455_100723802 348
128 3300025910 Ga0207684_10284186 Ga0207684_102841862 349
129 3300049742 Ga0501080_0005607 Ga0501080_0005607_3599_4660 350
130 3300039437 Ga0436365_0411111 Ga0436365_0411111_9200_10318 352
131 3300005354 Ga0070675_100054639 Ga0070675_1000546393 353
132 3300005467 Ga0070706_100133762 Ga0070706_1001337623 354
133 3300005937 Ga0081455_10000314 Ga0081455_1000031417 354
134 3300025915 Ga0207693_10015348 Ga0207693_100153482 354
135 3300000545 CNXas_1000022 CNXas_100002230 355

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13484

Fer4_16

4Fe-4S double cluster binding domain

203

267

0.99

PF08331

QueG_DUF1730

Epoxyqueuosine reductase QueG, DUF1730

77

151

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ltm-assembly1.cif.gz_B structure of a new family of artificial alpha helicoidal repeat proteins (alpha-rep) based on thermostable heat-like repeats 0.8506 267 337
6gx7-assembly2.cif.gz_F tubulin-copn-alpharep complex 0.7862 267 337
7q1f-assembly2.cif.gz_T cpap:tubulin:ie5 alpharep complex 0.7817 267 337
4jw2-assembly1.cif.gz_A selection of specific protein binders for pre-defined targets from an optimized library of artificial helicoidal repeat proteins (alpharep) 0.7794 267 340
6hwp-assembly1.cif.gz_A structure of a3_bgfpd, an artificial bi-domain protein based on two different alpharep domains : a3 and a gfp binding domain (bgfpd) 0.7581 267 337
ID Description Score Start End Superfamily
af_Q2FX88_260_379_1.25.10.10 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.8524 257 338 1.25.10.10
af_Q2G242_149_282_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.8046 308 344 3.40.50.1010
af_A0A1D8PL84_1004_1188_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.7928 303 341 3.40.50.1010
af_P40456_945_1105_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.7908 303 341 3.40.50.1010
4jw2A00 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.7794 267 340 1.25.10.10
ID Description Score Start End GO Terms
AF-A0A7V9V4P7-F1-model_v4 Epoxyqueuosine reductase 0.8677 265 355 GO:0008033
GO:0008616
GO:0052693
AF-A0A524LCC3-F1-model_v4 DUF1730 domain-containing protein 0.83 1 120 GO:0008033
GO:0008616
GO:0051539
GO:0052693
AF-A0A2V6TS87-F1-model_v4 tRNA epoxyqueuosine(34) reductase QueG 0.8288 1 207 GO:0005737
GO:0008033
GO:0008616
GO:0046872
GO:0051539
GO:0052693
AF-A0A3B9WA54-F1-model_v4 tRNA epoxyqueuosine(34) reductase QueG 0.8241 1 180 GO:0008033
GO:0008616
GO:0051539
GO:0052693
AF-A0A4V1TKQ7-F1-model_v4 deleted 0.8199 2 186

Feature Viewer

pLDDT pTM Quality
71.54 0.71 High
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Predicted Structure (AlphaFold2)

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