F161277

General Info

Members Datasets Scaffolds Average Seq Length
134 114 120 308

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0016617|Ga0501047_0016617_1499_2500
Length 333
Sequence LIEGGPRPPAIGIYDVPMLRFLTAPVRVRVPATSANLGPGFDALGLALALHDEVSARVTDAGIRVTVDGEGASELPADDAHLVVRCMLATFDRLGGRPEGLELSCRNGIPQARGLGSSSAATVAGVLAARALVADGPERLPDAAVLELAGQIEGHPDNVAPCLLGGLTIAWLEGGATRAVRLEPAAGLPTAVVIPADRGLTAQARAALPVQVPHRDAAFNAGRSALLVHALTGAPELLLPATDDLLHQGYRASGMPETARLVKGFRQAGIPAVVSGAGPSVLVFATEDEITRSEIPITSDWRVLPLDVDARGAVVEVDLQHAERGPVAAGRAS

Samples

Sample ID Description Type Environment
1 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
2 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
3 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
4 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
5 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
6 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
7 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
8 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
9 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
10 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
11 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
12 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
24 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
37 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
78 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
81 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
82 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
92 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
93 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
94 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
95 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
96 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
97 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
98 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
99 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
100 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
103 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
109 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
110 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
113 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
114 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.55
Metatranscriptomes 0
Isolates 10.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.73
Nodule 0
Rhizoplane 1.49
Rhizosphere 81.34
Stem 0
Stem Tuber 0
Unclassified 13.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10021046 3300003203 Bacteria 2624
2 Ga0070658_10301340 3300005327 Bacteria 1366
3 Ga0070683_100039570 3300005329 Bacteria 4329
4 Ga0070683_100319880 3300005329 Bacteria 1477
5 Ga0068869_100010941 3300005334 Bacteria 5939
6 Ga0068868_100495421 3300005338 Unclassified 1069
7 Ga0070660_100178060 3300005339 Bacteria 1720
8 Ga0070661_100102215 3300005344 Bacteria 2133
9 Ga0070669_100094430 3300005353 Bacteria 2248
10 Ga0070675_100010266 3300005354 Bacteria 7307
11 Ga0070659_100089518 3300005366 Bacteria 2465
12 Ga0070667_100134429 3300005367 Bacteria 2162
13 Ga0070714_100224229 3300005435 Bacteria 1729
14 Ga0070713_100042409 3300005436 Bacteria 3713
15 Ga0070700_100005832 3300005441 Bacteria 6537
16 Ga0070663_100008161 3300005455 Bacteria 6423
17 Ga0070662_100008091 3300005457 Bacteria 6845
18 Ga0070681_10100180 3300005458 Bacteria 2843
19 Ga0070684_100116759 3300005535 Bacteria 2397
20 Ga0070696_100006107 3300005546 Bacteria 8046
21 Ga0070664_100007135 3300005564 Bacteria 9010
22 Ga0068857_100014966 3300005577 Bacteria 6767
23 Ga0068861_100264031 3300005719 Bacteria 1475
24 Ga0068860_100244000 3300005843 Bacteria 1748
25 Ga0068862_100078524 3300005844 Bacteria 2860
26 Ga0081540_1005110 3300005983 Bacteria 9843
27 Ga0081540_1010565 3300005983 Bacteria 6237
28 Ga0081539_10000529 3300005985 Bacteria 79493
29 Ga0081539_10000632 3300005985 Bacteria 71274
30 Ga0081539_10006193 3300005985 Bacteria 11621
31 Ga0081539_10036967 3300005985 Bacteria 2914
32 Ga0081539_10160393 3300005985 Bacteria 1072
33 Ga0075428_100084442 3300006844 Bacteria 3464
34 Ga0075428_100270465 3300006844 Bacteria 1828
35 Ga0111539_10012377 3300009094 Bacteria 10697
36 Ga0105245_10012186 3300009098 Bacteria 7479
37 Ga0105247_10258216 3300009101 Bacteria 1194
38 Ga0105243_10011846 3300009148 Bacteria 6594
39 Ga0105243_10394233 3300009148 Bacteria 1284
40 Ga0105249_10316613 3300009553 Bacteria 1570
41 Ga0157370_10196908 3300013104 Bacteria 1870
42 Ga0157369_10308713 3300013105 Bacteria 1645
43 Ga0157378_10268537 3300013297 Bacteria 1640
44 Ga0163163_10266467 3300014325 Bacteria 1764
45 Ga0157377_10044416 3300014745 Bacteria 2477
46 Ga0157379_10129906 3300014968 Bacteria 2267
47 Ga0207642_10258363 3300025899 Bacteria 992
48 Ga0207710_10136381 3300025900 Bacteria 1182
49 Ga0207705_10072256 3300025909 Bacteria 2502
50 Ga0207660_10083634 3300025917 Bacteria 2351
51 Ga0207649_10079777 3300025920 Bacteria 2115
52 Ga0207681_10088184 3300025923 Bacteria 2209
53 Ga0207659_10007227 3300025926 Bacteria 6823
54 Ga0207687_10081137 3300025927 Bacteria 2343
55 Ga0207700_10019231 3300025928 Bacteria 4610
56 Ga0207690_10089601 3300025932 Bacteria 2169
57 Ga0207706_10012393 3300025933 Bacteria 7767
58 Ga0207709_10110323 3300025935 Bacteria 1838
59 Ga0207689_10189768 3300025942 Bacteria 1695
60 Ga0207661_10131868 3300025944 Bacteria 2141
61 Ga0207679_10124588 3300025945 Bacteria 2057
62 Ga0207712_10211559 3300025961 Bacteria 1545
63 Ga0207668_10021789 3300025972 Bacteria 4091
64 Ga0207678_10003629 3300026067 Bacteria 13871
65 Ga0207708_10010672 3300026075 Bacteria 6824
66 Ga0207641_10195404 3300026088 Bacteria 1862
67 Ga0207676_10123989 3300026095 Bacteria 2184
68 Ga0207674_10027763 3300026116 Bacteria 5980
69 Ga0207674_10183634 3300026116 Bacteria 2042
70 Ga0207675_100293401 3300026118 Bacteria 1582
71 Ga0207428_10074296 3300027907 Bacteria 2666
72 Ga0268265_10093640 3300028380 Bacteria 2407
73 Ga0268264_10132487 3300028381 Bacteria 2212
74 Ga0307515_10000045 3300028794 Bacteria 301029
75 Ga0307515_10053863 3300028794 Bacteria 5921
76 Ga0307512_10051632 3300030522 Bacteria 3287
77 Ga0265340_10001659 3300031247 Bacteria 12787
78 Ga0307513_10047293 3300031456 Bacteria 4681
79 Ga0307509_10038312 3300031507 Bacteria 5232
80 Ga0307509_10462670 3300031507 Bacteria 960
81 Ga0307508_10000498 3300031616 Bacteria 47177
82 Ga0307508_10029292 3300031616 Bacteria 4978
83 Ga0307516_10005758 3300031730 Bacteria 14682
84 Ga0307516_10030279 3300031730 Bacteria 5463
85 Ga0307516_10152279 3300031730 Bacteria 2071
86 Ga0307413_10059734 3300031824 Bacteria 2344
87 Ga0307410_10034037 3300031852 Bacteria 3296
88 Ga0326468_10000422 3300031889 Bacteria 4508
89 Ga0307406_10008344 3300031901 Bacteria 5773
90 Ga0307406_10370077 3300031901 Bacteria 1126
91 Ga0307407_10147310 3300031903 Bacteria 1526
92 Ga0307412_10118101 3300031911 Bacteria 1905
93 Ga0307409_100013280 3300031995 Bacteria 5291
94 Ga0307416_100221365 3300032002 Bacteria 1815
95 Ga0307416_100348139 3300032002 Bacteria 1498
96 Ga0307416_100565067 3300032002 Bacteria 1213
97 Ga0307415_100023789 3300032126 Bacteria 3811
98 Ga0307415_100074450 3300032126 Bacteria 2400
99 Ga0307415_100145215 3300032126 Bacteria 1818
100 Ga0373941_0021459 3300035115 Bacteria 1823
101 Ga0373942_0000381 3300035207 Bacteria 12259
102 Ga0373935_0062296 3300035692 Bacteria 2389
103 Ga0436365_1887669 3300039437 Bacteria 5975
104 Ga0451791_1502766 3300041451 Bacteria 3885
105 Ga0466960_0028329 3300044901 Bacteria 2562
106 Ga0466967_0029215 3300045976 Bacteria 4611
107 Ga0495606_0001405 3300046507 Bacteria 32375
108 Ga0495668_0000409 3300046616 Bacteria 56022
109 Ga0495625_0001711 3300046660 Bacteria 25519
110 Ga0495676_0033477 3300047321 Bacteria 4327
111 Ga0495626_0000029 3300048091 Bacteria 202868
112 Ga0496106_0184328 3300048909 Bacteria 1658
113 Ga0501047_0016617 3300049581 Bacteria 7026
114 Ga0501075_0109632 3300049591 Bacteria 2099
115 nmdc:mga08y16_13741_c1 3300050511 Bacteria 8523
116 Ga0500568_0015607 3300053139 Bacteria 3397
117 Ga0500600_0041523 3300053149 Bacteria 2653
118 Ga0500604_0008750 3300053151 Bacteria 2689
119 Ga0500616_0000240 3300053153 Bacteria 86336
120 Ga0500616_0091136 3300053153 Bacteria 1509

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028794 Ga0307515_10053863 Ga0307515_100538636 277
2 iso_pu_bacteria 2799112218 2799185345 282
3 3300039437 Ga0436365_1887669 Ga0436365_1887669_3503_4405 284
4 iso_pu_bacteria 2861520306 2861526473 285
5 3300044901 Ga0466960_0028329 Ga0466960_0028329_438_1373 286
6 3300005338 Ga0068868_100495421 Ga0068868_1004954212 287
7 3300005546 Ga0070696_100006107 Ga0070696_1000061074 287
8 3300009148 Ga0105243_10011846 Ga0105243_100118462 287
9 3300025935 Ga0207709_10110323 Ga0207709_101103232 287
10 3300047321 Ga0495676_0033477 Ga0495676_0033477_2799_3665 287
11 3300048909 Ga0496106_0184328 Ga0496106_0184328_136_1002 287
12 iso_pu_bacteria 2675903060 2676494789 288
13 iso_pu_bacteria 2895427314 2895438663 288
14 iso_pu_bacteria 2932431166 2932433241 289
15 iso_pu_bacteria 8057568493 8057569237 289
16 3300031247 Ga0265340_10001659 Ga0265340_100016594 290
17 iso_pu_bacteria 2884693830 2884695586 291
18 iso_pu_bacteria 2895442618 2895445707 291
19 3300005329 Ga0070683_100039570 Ga0070683_1000395704 295
20 3300005339 Ga0070660_100178060 Ga0070660_1001780602 295
21 3300013105 Ga0157369_10308713 Ga0157369_103087132 295
22 3300025917 Ga0207660_10083634 Ga0207660_100836342 295
23 iso_pu_bacteria 2887478801 2887483045 295
24 iso_pu_bacteria 8001781756 8001782135 295
25 iso_pu_bacteria 2856858025 2856858517 296
26 3300030522 Ga0307512_10051632 Ga0307512_100516322 297
27 3300045976 Ga0466967_0029215 Ga0466967_0029215_1874_2785 297
28 3300031456 Ga0307513_10047293 Ga0307513_100472932 298
29 3300053151 Ga0500604_0008750 Ga0500604_0008750_1421_2371 298
30 3300053153 Ga0500616_0091136 Ga0500616_0091136_384_1334 298
31 iso_pu_bacteria 2622736605 2623501696 298
32 3300046507 Ga0495606_0001405 Ga0495606_0001405_27382_28293 299
33 3300046616 Ga0495668_0000409 Ga0495668_0000409_27690_28601 299
34 3300046660 Ga0495625_0001711 Ga0495625_0001711_24125_25036 299
35 3300048091 Ga0495626_0000029 Ga0495626_0000029_133422_134333 299
36 3300053153 Ga0500616_0000240 Ga0500616_0000240_84761_85711 299
37 iso_pu_bacteria 2751185782 2753264931 299
38 3300032126 Ga0307415_100145215 Ga0307415_1001452152 300
39 3300049591 Ga0501075_0109632 Ga0501075_0109632_676_1596 300
40 3300053139 Ga0500568_0015607 Ga0500568_0015607_18_947 300
41 3300005983 Ga0081540_1005110 Ga0081540_10051109 302
42 3300005329 Ga0070683_100319880 Ga0070683_1003198801 303
43 3300005367 Ga0070667_100134429 Ga0070667_1001344292 303
44 3300005983 Ga0081540_1010565 Ga0081540_10105653 303
45 3300005985 Ga0081539_10000529 Ga0081539_1000052963 303
46 3300005985 Ga0081539_10160393 Ga0081539_101603931 303
47 3300009101 Ga0105247_10258216 Ga0105247_102582162 303
48 3300013297 Ga0157378_10268537 Ga0157378_102685372 303
49 3300014968 Ga0157379_10129906 Ga0157379_101299062 303
50 3300025900 Ga0207710_10136381 Ga0207710_101363811 303
51 3300025972 Ga0207668_10021789 Ga0207668_100217892 303
52 3300026088 Ga0207641_10195404 Ga0207641_101954041 303
53 3300031507 Ga0307509_10038312 Ga0307509_100383123 303
54 3300031507 Ga0307509_10462670 Ga0307509_104626701 303
55 3300031616 Ga0307508_10000498 Ga0307508_1000049836 303
56 3300031901 Ga0307406_10370077 Ga0307406_103700772 303
57 3300035115 Ga0373941_0021459 Ga0373941_0021459_53_967 303
58 3300035207 Ga0373942_0000381 Ga0373942_0000381_9704_10618 303
59 3300035692 Ga0373935_0062296 Ga0373935_0062296_813_1724 303
60 3300031901 Ga0307406_10008344 Ga0307406_100083444 304
61 3300031995 Ga0307409_100013280 Ga0307409_1000132802 304
62 3300032126 Ga0307415_100023789 Ga0307415_1000237894 304
63 iso_pu_bacteria 8003856774 8003859893 308
64 3300028794 Ga0307515_10000045 Ga0307515_100000459 311
65 3300031730 Ga0307516_10005758 Ga0307516_1000575810 311
66 3300031730 Ga0307516_10152279 Ga0307516_101522792 311
67 3300041451 Ga0451791_1502766 Ga0451791_1502766_2604_3539 311
68 3300005327 Ga0070658_10301340 Ga0070658_103013401 312
69 3300005334 Ga0068869_100010941 Ga0068869_1000109416 312
70 3300005344 Ga0070661_100102215 Ga0070661_1001022152 312
71 3300005353 Ga0070669_100094430 Ga0070669_1000944302 312
72 3300005354 Ga0070675_100010266 Ga0070675_1000102662 312
73 3300005366 Ga0070659_100089518 Ga0070659_1000895182 312
74 3300005435 Ga0070714_100224229 Ga0070714_1002242293 312
75 3300005436 Ga0070713_100042409 Ga0070713_1000424093 312
76 3300005441 Ga0070700_100005832 Ga0070700_1000058326 312
77 3300005455 Ga0070663_100008161 Ga0070663_1000081615 312
78 3300005457 Ga0070662_100008091 Ga0070662_1000080912 312
79 3300005458 Ga0070681_10100180 Ga0070681_101001803 312
80 3300005535 Ga0070684_100116759 Ga0070684_1001167593 312
81 3300005564 Ga0070664_100007135 Ga0070664_1000071359 312
82 3300005577 Ga0068857_100014966 Ga0068857_1000149662 312
83 3300005719 Ga0068861_100264031 Ga0068861_1002640312 312
84 3300005843 Ga0068860_100244000 Ga0068860_1002440002 312
85 3300005844 Ga0068862_100078524 Ga0068862_1000785242 312
86 3300009094 Ga0111539_10012377 Ga0111539_100123777 312
87 3300009098 Ga0105245_10012186 Ga0105245_100121866 312
88 3300009148 Ga0105243_10394233 Ga0105243_103942331 312
89 3300009553 Ga0105249_10316613 Ga0105249_103166132 312
90 3300013104 Ga0157370_10196908 Ga0157370_101969082 312
91 3300014325 Ga0163163_10266467 Ga0163163_102664672 312
92 3300014745 Ga0157377_10044416 Ga0157377_100444162 312
93 3300025899 Ga0207642_10258363 Ga0207642_102583631 312
94 3300025909 Ga0207705_10072256 Ga0207705_100722562 312
95 3300025920 Ga0207649_10079777 Ga0207649_100797772 312
96 3300025923 Ga0207681_10088184 Ga0207681_100881842 312
97 3300025926 Ga0207659_10007227 Ga0207659_100072272 312
98 3300025927 Ga0207687_10081137 Ga0207687_100811372 312
99 3300025928 Ga0207700_10019231 Ga0207700_100192313 312
100 3300025932 Ga0207690_10089601 Ga0207690_100896012 312
101 3300025933 Ga0207706_10012393 Ga0207706_100123932 312
102 3300025942 Ga0207689_10189768 Ga0207689_101897682 312
103 3300025944 Ga0207661_10131868 Ga0207661_101318682 312
104 3300025945 Ga0207679_10124588 Ga0207679_101245882 312
105 3300025961 Ga0207712_10211559 Ga0207712_102115592 312
106 3300026067 Ga0207678_10003629 Ga0207678_100036295 312
107 3300026075 Ga0207708_10010672 Ga0207708_100106726 312
108 3300026095 Ga0207676_10123989 Ga0207676_101239892 312
109 3300026116 Ga0207674_10027763 Ga0207674_100277632 312
110 3300026116 Ga0207674_10183634 Ga0207674_101836342 312
111 3300026118 Ga0207675_100293401 Ga0207675_1002934012 312
112 3300027907 Ga0207428_10074296 Ga0207428_100742963 312
113 3300028380 Ga0268265_10093640 Ga0268265_100936402 312
114 3300028381 Ga0268264_10132487 Ga0268264_101324872 312
115 3300031824 Ga0307413_10059734 Ga0307413_100597342 312
116 3300031903 Ga0307407_10147310 Ga0307407_101473102 312
117 3300032002 Ga0307416_100221365 Ga0307416_1002213652 312
118 3300032002 Ga0307416_100348139 Ga0307416_1003481392 312
119 3300032126 Ga0307415_100074450 Ga0307415_1000744502 312
120 3300050511 nmdc:mga08y16_13741_c1 nmdc:mga08y16_13741_c1_866_1807 312
121 3300053149 Ga0500600_0041523 Ga0500600_0041523_153_1091 312
122 3300049581 Ga0501047_0016617 Ga0501047_0016617_1499_2500 313
123 3300003203 JGI25406J46586_10021046 JGI25406J46586_100210462 314
124 3300005985 Ga0081539_10000632 Ga0081539_1000063253 314
125 3300005985 Ga0081539_10006193 Ga0081539_1000619311 314
126 3300005985 Ga0081539_10036967 Ga0081539_100369672 314
127 3300006844 Ga0075428_100084442 Ga0075428_1000844423 314
128 3300006844 Ga0075428_100270465 Ga0075428_1002704652 314
129 3300031616 Ga0307508_10029292 Ga0307508_100292923 314
130 3300031730 Ga0307516_10030279 Ga0307516_100302792 314
131 3300031852 Ga0307410_10034037 Ga0307410_100340372 314
132 3300031889 Ga0326468_10000422 Ga0326468_100004223 314
133 3300031911 Ga0307412_10118101 Ga0307412_101181012 314
134 3300032002 Ga0307416_100565067 Ga0307416_1005650672 314

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00288

GHMP_kinases_N

GHMP kinases N terminal domain

81

166

0.93

PF08544

GHMP_kinases_C

GHMP kinases C terminal

224

293

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
6cyz-assembly1.cif.gz_B mycobacterial homoserine kinase thrb in complex with amppnp 0.9134 6 296
5wat-assembly1.cif.gz_B corynebacterium glutamicum full length homoserine kinase 0.8991 6 296
6cyz-assembly1.cif.gz_B mycobacterial homoserine kinase thrb in complex with amppnp 0.8953 6 296
5wat-assembly1.cif.gz_A-4 corynebacterium glutamicum full length homoserine kinase 0.8898 3 295
5was-assembly1.cif.gz_A-2 corynebacterium glutamicum hydrolyzed homoserine kinase 0.8833 6 172
ID Description Score Start End Superfamily
af_P9WKE7_178_307_3.30.70.890 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;GHMP kinase, C-terminal domain 0.9427 170 285 3.30.70.890
af_P9WKE7_13_177_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9244 11 169 3.30.230.10
af_Q2FYV2_4_165_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.8988 11 166 3.30.230.10
af_B4FKF4_230_364_3.30.70.890 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;GHMP kinase, C-terminal domain 0.8972 171 267 3.30.70.890
af_Q92209_209_343_3.30.70.890 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;GHMP kinase, C-terminal domain 0.889 171 269 3.30.70.890
ID Description Score Start End GO Terms
AF-A0A3N9V5H0-F1-model_v4 deleted 0.9971 1 221
AF-A0A3N9V5H0-F1-model_v4 deleted 0.9927 1 221
AF-B5GL70-F1-model_v4 deleted 0.9891 1 247
AF-A0A0F4JA78-F1-model_v4 Serine kinase 0.9876 1 117 GO:0005524
GO:0016301
AF-A0A4R8HAN1-F1-model_v4 deleted 0.984 1 183

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pLDDT pTM Quality
89.53 0.89 High
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Predicted Structure (AlphaFold2)

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