F161083

General Info

Members Datasets Scaffolds Average Seq Length
134 113 134 331

Family's Representative Sequence

Representative Sequence 3300048903|Ga0496100_0017097|Ga0496100_0017097_893_1984
Length 363
Sequence MEDVGMSFWTGRNVFVTGATGLLGSWITAELLRRQATVICLVRDWVPQSEAVRAGTLAQCRVVRGRLEDFSLVLRALNEYEVDSIFHLGAQTIVGTANRSALSTFESNIRGTWVLLEAARQCASIVERVIVASSDKAYGEHQQLPYTEQTPLIGRYPYDVSKACADLIAQSYFHSYGLPVAITRCGNLYGGGDLNFNRLVPGTIRSALLDQPPVIRSDGSCVRDYFFVGDAVGAYLELAEHMPGPGFTGEAYNFGTETPLGVIDMASKILEVMDKPSLALRILNQATNEIPRQYLDCTKARERLGWRPRYTIESGLTETVEWYSTWLGRSRGGEQRRLRQRSNRYSVPPGTTGVAVPAPRSPA

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
70 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
71 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
76 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
83 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
86 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
87 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
88 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
91 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
92 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
93 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
94 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
95 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
112 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
113 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.24
Nodule 0
Rhizoplane 8.21
Rhizosphere 85.07
Stem 0
Stem Tuber 0
Unclassified 4.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000010 3300002074 Bacteria 166979
2 rootH1_10123946 3300003323 Bacteria 4058
3 Ga0065704_10075288 3300005289 Bacteria 5678
4 Ga0065715_10107379 3300005293 Bacteria 2773
5 Ga0065707_10117350 3300005295 Bacteria 2214
6 Ga0068869_100061801 3300005334 Unclassified 2748
7 Ga0070689_100108945 3300005340 Bacteria 2201
8 Ga0070661_100138276 3300005344 Bacteria 1834
9 Ga0070692_10042231 3300005345 Bacteria 2340
10 Ga0070688_100093586 3300005365 Bacteria 1968
11 Ga0070705_100003457 3300005440 Bacteria 7741
12 Ga0070700_100035473 3300005441 Bacteria 3018
13 Ga0070700_100191869 3300005441 Bacteria 1429
14 Ga0070694_100071418 3300005444 Bacteria 2393
15 Ga0070663_100001167 3300005455 Bacteria 14466
16 Ga0068867_100191748 3300005459 Bacteria 1631
17 Ga0070706_100011668 3300005467 Bacteria 8160
18 Ga0070698_100000018 3300005471 Bacteria 107758
19 Ga0070698_100413406 3300005471 Bacteria 1283
20 Ga0070699_100017056 3300005518 Bacteria 6237
21 Ga0070699_100066670 3300005518 Bacteria 3125
22 Ga0070679_100322388 3300005530 Bacteria 1494
23 Ga0070697_100001551 3300005536 Bacteria 17484
24 Ga0070695_100004478 3300005545 Bacteria 8207
25 Ga0070695_100007530 3300005545 Bacteria 6448
26 Ga0070695_100059726 3300005545 Bacteria 2470
27 Ga0070696_100002003 3300005546 Bacteria 13360
28 Ga0070696_100005293 3300005546 Bacteria 8612
29 Ga0070704_100038017 3300005549 Bacteria 3293
30 Ga0070704_100083496 3300005549 Bacteria 2358
31 Ga0068855_100006333 3300005563 Bacteria 14423
32 Ga0068855_100327032 3300005563 Unclassified 1693
33 Ga0068857_100115929 3300005577 Bacteria 2410
34 Ga0068859_100145688 3300005617 Bacteria 2443
35 Ga0068864_100133774 3300005618 Bacteria 2231
36 Ga0068861_100001703 3300005719 Bacteria 14123
37 Ga0068861_100007200 3300005719 Bacteria 7622
38 Ga0068862_100101996 3300005844 Bacteria 2511
39 Ga0070717_10290321 3300006028 Bacteria 1452
40 Ga0075431_100182634 3300006847 Bacteria 2152
41 Ga0075434_100015023 3300006871 Bacteria 7414
42 Ga0097620_100145685 3300006931 Bacteria 2443
43 Ga0075435_100023749 3300007076 Bacteria 4748
44 Ga0099794_10002941 3300007265 Bacteria 6418
45 Ga0105240_10088193 3300009093 Unclassified 3797
46 Ga0105240_10089156 3300009093 Unclassified 3773
47 Ga0111539_10005511 3300009094 Bacteria 16375
48 Ga0111539_10038961 3300009094 Bacteria 5732
49 Ga0111539_10074848 3300009094 Bacteria 3990
50 Ga0114129_10009891 3300009147 Bacteria 13598
51 Ga0114129_10085561 3300009147 Bacteria 4374
52 Ga0105241_10049203 3300009174 Bacteria 3210
53 Ga0105237_10000936 3300009545 Bacteria 39290
54 Ga0105238_10006444 3300009551 Bacteria 11673
55 Ga0105238_10023456 3300009551 Bacteria 6290
56 Ga0105249_10007790 3300009553 Bacteria 9332
57 Ga0157371_10007764 3300013102 Bacteria 8625
58 Ga0157369_10084000 3300013105 Unclassified 3404
59 Ga0157374_10102340 3300013296 Bacteria 2747
60 Ga0157372_10005182 3300013307 Bacteria 13864
61 Ga0157380_10000240 3300014326 Bacteria 32944
62 Ga0213876_10019239 3300021384 Bacteria 3606
63 Ga0207705_10001754 3300025909 Bacteria 17142
64 Ga0207695_10011635 3300025913 Bacteria 10638
65 Ga0207671_10000829 3300025914 Bacteria 39288
66 Ga0207660_10243205 3300025917 Bacteria 1418
67 Ga0207662_10023350 3300025918 Bacteria 3553
68 Ga0207657_10000462 3300025919 Bacteria 43108
69 Ga0207681_10011244 3300025923 Bacteria 5498
70 Ga0207694_10089656 3300025924 Bacteria 2426
71 Ga0207686_10125795 3300025934 Unclassified 1751
72 Ga0207689_10076674 3300025942 Unclassified 2748
73 Ga0207667_10003140 3300025949 Bacteria 20452
74 Ga0207712_10014155 3300025961 Bacteria 5121
75 Ga0207640_10038761 3300025981 Bacteria 3010
76 Ga0207678_10000126 3300026067 Bacteria 63715
77 Ga0207678_10153038 3300026067 Bacteria 1970
78 Ga0207708_10031559 3300026075 Bacteria 4022
79 Ga0207708_10176531 3300026075 Bacteria 1694
80 Ga0207675_100009828 3300026118 Bacteria 8954
81 Ga0207698_10257063 3300026142 Bacteria 1602
82 Ga0209588_1037645 3300027671 Bacteria 1557
83 Ga0268266_10056157 3300028379 Bacteria 3387
84 Ga0268265_10061346 3300028380 Bacteria 2885
85 Ga0265337_1015918 3300028556 Bacteria 2447
86 Ga0265326_10007503 3300028558 Bacteria 3340
87 Ga0265334_10001556 3300028573 Bacteria 11047
88 Ga0265334_10007120 3300028573 Bacteria 4798
89 Ga0265338_10071354 3300028800 Bacteria 2972
90 Ga0265324_10028710 3300029957 Bacteria 1960
91 Ga0265327_10002236 3300031251 Bacteria 21008
92 Ga0373927_0005407 3300035695 Bacteria 8817
93 Ga0373933_0011577 3300035724 Bacteria 4867
94 Ga0373937_0003880 3300036401 Bacteria 12648
95 Ga0400489_63354 3300039093 Bacteria 3075
96 Ga0436365_0632356 3300039437 Bacteria 1084
97 Ga0436365_1089465 3300039437 Bacteria 5364
98 Ga0436360_0885684 3300039438 Bacteria 2532
99 Ga0436363_0776109 3300039450 Bacteria 3547
100 Ga0439460_0037850 3300042461 Bacteria 1405
101 Ga0453683_0044024 3300044673 Bacteria 2800
102 Ga0453683_0328322 3300044673 Bacteria 981
103 Ga0453684_0112910 3300044712 Bacteria 3297
104 Ga0495638_0101305 3300046460 Bacteria 1722
105 Ga0495580_0000259 3300046472 Bacteria 42209
106 Ga0495582_0002589 3300046473 Bacteria 10061
107 Ga0495594_0004832 3300046499 Bacteria 6940
108 Ga0495666_0020602 3300046526 Bacteria 3266
109 Ga0495622_0012644 3300046557 Bacteria 3912
110 Ga0495633_0013207 3300046558 Bacteria 4361
111 Ga0495593_0149637 3300047673 Bacteria 1181
112 Ga0496100_0017097 3300048903 Bacteria 4275
113 Ga0496102_0004294 3300048905 Bacteria 12048
114 Ga0496103_0001946 3300048906 Bacteria 13351
115 Ga0496104_0004616 3300048907 Bacteria 12004
116 Ga0496107_0014025 3300048910 Bacteria 5610
117 Ga0496108_0004865 3300048911 Bacteria 10846
118 Ga0496109_0002167 3300048912 Bacteria 16318
119 Ga0496110_0012273 3300048913 Bacteria 7041
120 Ga0496112_0002069 3300048915 Bacteria 15908
121 Ga0496113_0001959 3300048916 Bacteria 11791
122 Ga0496115_0104193 3300048918 Unclassified 2328
123 Ga0501040_0215132 3300049576 Bacteria 1367
124 Ga0501081_0333166 3300049743 Bacteria 1117
125 Ga0501045_0265070 3300049824 Bacteria 1279
126 nmdc:mga00v17_67589_c1 3300050491 Bacteria 2208
127 nmdc:mga05p37_215958_c1 3300050507 Bacteria 2316
128 nmdc:mga06r32_16039_c1 3300050510 Bacteria 6819
129 nmdc:mga06r32_207715_c1 3300050510 Bacteria 1946
130 nmdc:mga08y16_196842_c1 3300050511 Bacteria 2089
131 nmdc:mga08y16_6413_c1 3300050511 Bacteria 12332
132 nmdc:mga0a205_328580_c1 3300050515 Bacteria 1399
133 Ga0500643_006011 3300053087 Bacteria 5138
134 Ga0500624_000036 3300053157 Bacteria 94678

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047673 Ga0495593_0149637 Ga0495593_0149637_12_824 263
2 3300009093 Ga0105240_10089156 Ga0105240_100891563 298
3 3300009551 Ga0105238_10006444 Ga0105238_100064446 298
4 3300013102 Ga0157371_10007764 Ga0157371_100077643 298
5 3300013105 Ga0157369_10084000 Ga0157369_100840002 298
6 3300013307 Ga0157372_10005182 Ga0157372_100051826 298
7 3300025909 Ga0207705_10001754 Ga0207705_100017543 298
8 3300025913 Ga0207695_10011635 Ga0207695_100116358 298
9 3300025919 Ga0207657_10000462 Ga0207657_1000046225 298
10 3300025981 Ga0207640_10038761 Ga0207640_100387612 298
11 3300026067 Ga0207678_10000126 Ga0207678_1000012625 298
12 3300025918 Ga0207662_10023350 Ga0207662_100233503 299
13 3300006028 Ga0070717_10290321 Ga0070717_102903211 300
14 3300044673 Ga0453683_0328322 Ga0453683_0328322_19_936 303
15 3300009545 Ga0105237_10000936 Ga0105237_1000093620 305
16 3300009551 Ga0105238_10023456 Ga0105238_100234562 305
17 3300025914 Ga0207671_10000829 Ga0207671_1000082920 305
18 3300044712 Ga0453684_0112910 Ga0453684_0112910_223_1221 306
19 3300005471 Ga0070698_100413406 Ga0070698_1004134062 308
20 3300039437 Ga0436365_1089465 Ga0436365_1089465_46_984 308
21 3300046473 Ga0495582_0002589 Ga0495582_0002589_3245_4192 308
22 3300046499 Ga0495594_0004832 Ga0495594_0004832_24_971 308
23 3300046526 Ga0495666_0020602 Ga0495666_0020602_295_1242 308
24 3300046557 Ga0495622_0012644 Ga0495622_0012644_929_1876 308
25 3300009147 Ga0114129_10085561 Ga0114129_100855613 312
26 3300046460 Ga0495638_0101305 Ga0495638_0101305_586_1539 315
27 3300005440 Ga0070705_100003457 Ga0070705_1000034572 322
28 3300003323 rootH1_10123946 rootH1_101239462 323
29 3300005467 Ga0070706_100011668 Ga0070706_1000116684 323
30 3300005471 Ga0070698_100000018 Ga0070698_10000001850 323
31 3300005536 Ga0070697_100001551 Ga0070697_1000015515 323
32 3300028573 Ga0265334_10001556 Ga0265334_100015564 323
33 3300028800 Ga0265338_10071354 Ga0265338_100713542 323
34 3300046558 Ga0495633_0013207 Ga0495633_0013207_252_1226 323
35 3300049576 Ga0501040_0215132 Ga0501040_0215132_331_1308 323
36 3300053157 Ga0500624_000036 Ga0500624_000036_14209_15183 323
37 3300005295 Ga0065707_10117350 Ga0065707_101173502 324
38 3300005340 Ga0070689_100108945 Ga0070689_1001089452 324
39 3300005365 Ga0070688_100093586 Ga0070688_1000935862 324
40 3300005441 Ga0070700_100191869 Ga0070700_1001918691 324
41 3300005545 Ga0070695_100004478 Ga0070695_1000044782 324
42 3300005549 Ga0070704_100083496 Ga0070704_1000834963 324
43 3300005563 Ga0068855_100327032 Ga0068855_1003270322 324
44 3300005617 Ga0068859_100145688 Ga0068859_1001456883 324
45 3300005844 Ga0068862_100101996 Ga0068862_1001019962 324
46 3300006871 Ga0075434_100015023 Ga0075434_1000150235 324
47 3300006931 Ga0097620_100145685 Ga0097620_1001456853 324
48 3300007076 Ga0075435_100023749 Ga0075435_1000237493 324
49 3300026075 Ga0207708_10176531 Ga0207708_101765312 324
50 3300028380 Ga0268265_10061346 Ga0268265_100613463 324
51 3300042461 Ga0439460_0037850 Ga0439460_0037850_195_1226 324
52 3300044673 Ga0453683_0044024 Ga0453683_0044024_151_1134 324
53 3300039093 Ga0400489_63354 Ga0400489_63354_1260_2240 325
54 3300046472 Ga0495580_0000259 Ga0495580_0000259_5716_6714 325
55 3300005334 Ga0068869_100061801 Ga0068869_1000618013 326
56 3300005345 Ga0070692_10042231 Ga0070692_100422312 326
57 3300009093 Ga0105240_10088193 Ga0105240_100881932 326
58 3300013296 Ga0157374_10102340 Ga0157374_101023403 326
59 3300025934 Ga0207686_10125795 Ga0207686_101257952 326
60 3300025942 Ga0207689_10076674 Ga0207689_100766743 326
61 3300049743 Ga0501081_0333166 Ga0501081_0333166_35_1054 326
62 3300005289 Ga0065704_10075288 Ga0065704_100752882 327
63 3300005545 Ga0070695_100007530 Ga0070695_1000075306 327
64 3300005546 Ga0070696_100005293 Ga0070696_1000052938 327
65 3300028556 Ga0265337_1015918 Ga0265337_10159182 327
66 3300035695 Ga0373927_0005407 Ga0373927_0005407_752_1741 327
67 3300039438 Ga0436360_0885684 Ga0436360_0885684_566_1600 327
68 3300005344 Ga0070661_100138276 Ga0070661_1001382762 328
69 3300005455 Ga0070663_100001167 Ga0070663_1000011674 328
70 3300005530 Ga0070679_100322388 Ga0070679_1003223881 328
71 3300006847 Ga0075431_100182634 Ga0075431_1001826342 328
72 3300009094 Ga0111539_10074848 Ga0111539_100748483 328
73 3300009174 Ga0105241_10049203 Ga0105241_100492032 328
74 3300025917 Ga0207660_10243205 Ga0207660_102432051 328
75 3300025924 Ga0207694_10089656 Ga0207694_100896562 328
76 3300026142 Ga0207698_10257063 Ga0207698_102570632 328
77 3300028379 Ga0268266_10056157 Ga0268266_100561572 328
78 3300031251 Ga0265327_10002236 Ga0265327_1000223613 328
79 3300039437 Ga0436365_0632356 Ga0436365_0632356_58_1059 328
80 3300039450 Ga0436363_0776109 Ga0436363_0776109_1316_2317 328
81 3300049824 Ga0501045_0265070 Ga0501045_0265070_230_1234 328
82 3300050510 nmdc:mga06r32_16039_c1 nmdc:mga06r32_16039_c1_3312_4316 328
83 3300050510 nmdc:mga06r32_207715_c1 nmdc:mga06r32_207715_c1_802_1818 328
84 3300050511 nmdc:mga08y16_196842_c1 nmdc:mga08y16_196842_c1_637_1641 328
85 3300050515 nmdc:mga0a205_328580_c1 nmdc:mga0a205_328580_c1_288_1292 328
86 3300053087 Ga0500643_006011 Ga0500643_006011_861_1877 328
87 3300007265 Ga0099794_10002941 Ga0099794_100029414 329
88 3300021384 Ga0213876_10019239 Ga0213876_100192394 329
89 3300027671 Ga0209588_1037645 Ga0209588_10376452 329
90 3300035724 Ga0373933_0011577 Ga0373933_0011577_2488_3486 329
91 3300036401 Ga0373937_0003880 Ga0373937_0003880_6845_7843 329
92 3300048903 Ga0496100_0017097 Ga0496100_0017097_893_1984 329
93 3300048905 Ga0496102_0004294 Ga0496102_0004294_8733_9824 329
94 3300048906 Ga0496103_0001946 Ga0496103_0001946_9777_10868 329
95 3300048907 Ga0496104_0004616 Ga0496104_0004616_5157_6248 329
96 3300048910 Ga0496107_0014025 Ga0496107_0014025_1521_2612 329
97 3300048911 Ga0496108_0004865 Ga0496108_0004865_5731_6822 329
98 3300048912 Ga0496109_0002167 Ga0496109_0002167_9556_10647 329
99 3300048913 Ga0496110_0012273 Ga0496110_0012273_5666_6757 329
100 3300048915 Ga0496112_0002069 Ga0496112_0002069_11332_12423 329
101 3300048916 Ga0496113_0001959 Ga0496113_0001959_8349_9440 329
102 3300048918 Ga0496115_0104193 Ga0496115_0104193_308_1399 329
103 3300005518 Ga0070699_100066670 Ga0070699_1000666703 330
104 3300005546 Ga0070696_100002003 Ga0070696_1000020038 330
105 3300005459 Ga0068867_100191748 Ga0068867_1001917482 331
106 3300005719 Ga0068861_100007200 Ga0068861_1000072005 332
107 3300009147 Ga0114129_10009891 Ga0114129_100098916 332
108 3300028558 Ga0265326_10007503 Ga0265326_100075033 332
109 3300028573 Ga0265334_10007120 Ga0265334_100071204 332
110 3300029957 Ga0265324_10028710 Ga0265324_100287101 332
111 3300050507 nmdc:mga05p37_215958_c1 nmdc:mga05p37_215958_c1_367_1365 332
112 3300005293 Ga0065715_10107379 Ga0065715_101073792 333
113 3300005441 Ga0070700_100035473 Ga0070700_1000354733 333
114 3300005444 Ga0070694_100071418 Ga0070694_1000714182 333
115 3300005518 Ga0070699_100017056 Ga0070699_1000170562 333
116 3300005545 Ga0070695_100059726 Ga0070695_1000597262 333
117 3300005549 Ga0070704_100038017 Ga0070704_1000380172 333
118 3300005577 Ga0068857_100115929 Ga0068857_1001159292 333
119 3300005618 Ga0068864_100133774 Ga0068864_1001337742 333
120 3300005719 Ga0068861_100001703 Ga0068861_1000017033 333
121 3300009094 Ga0111539_10005511 Ga0111539_1000551111 333
122 3300009094 Ga0111539_10038961 Ga0111539_100389613 333
123 3300009553 Ga0105249_10007790 Ga0105249_100077906 333
124 3300014326 Ga0157380_10000240 Ga0157380_1000024024 333
125 3300025923 Ga0207681_10011244 Ga0207681_100112446 333
126 3300025961 Ga0207712_10014155 Ga0207712_100141554 333
127 3300026075 Ga0207708_10031559 Ga0207708_100315591 333
128 3300026118 Ga0207675_100009828 Ga0207675_1000098287 333
129 3300050511 nmdc:mga08y16_6413_c1 nmdc:mga08y16_6413_c1_9076_10077 333
130 3300005563 Ga0068855_100006333 Ga0068855_1000063339 334
131 3300025949 Ga0207667_10003140 Ga0207667_1000314013 334
132 3300026067 Ga0207678_10153038 Ga0207678_101530382 334
133 3300050491 nmdc:mga00v17_67589_c1 nmdc:mga00v17_67589_c1_1137_2168 339
134 3300002074 JGI24748J21848_1000010 JGI24748J21848_100001029 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

14

255

0.94

PF04321

RmlD_sub_bind

RmlD substrate binding domain

12

207

0.9

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

14

191

0.86

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

15

319

0.86

PF07993

NAD_binding_4

Male sterility protein

16

207

0.79

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

15

276

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.9364 19 339
3m2p-assembly3.cif.gz_E the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.9263 24 335
2hun-assembly1.cif.gz_B crystal structure of hypothetical protein ph0414 from pyrococcus horikoshii ot3 0.9255 22 336
7ys8-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (rv3634c) from mycobacterium tuberculosis 0.9252 25 337
3m2p-assembly2.cif.gz_C the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.9239 24 331
ID Description Score Start End Superfamily
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9512 19 195 3.40.50.720
4zrmB02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9465 210 336 3.90.25.10
af_Q0DDZ4_1_298_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.917 65 339 3.40.50.720
3m2pE00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9158 24 334 3.40.50.720
4zrnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9071 25 266 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A352NGG8-F1-model_v4 Sugar dehydratase 0.9773 19 167
AF-A0A7T5R9X3-F1-model_v4 GDP-mannose 4,6-dehydratase 0.9703 20 339
AF-A0A1V5GSF8-F1-model_v4 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) 0.9675 21 339 GO:0047733
AF-A0A536PVN8-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9662 21 338
AF-A0A3D0P6B0-F1-model_v4 Sugar dehydratase 0.9657 40 293

Feature Viewer

pLDDT pTM Quality
91.52 0.89 High
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Predicted Structure (AlphaFold2)

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