F159869

General Info

Members Datasets Scaffolds Average Seq Length
134 109 128 348

Family's Representative Sequence

Representative Sequence 3300014325|Ga0163163_10014682|Ga0163163_100146823
Length 376
Sequence MTYVRNAWYVAAWADECGAQRPMGVRVLNEPIVIWRNAGGELAAFEDRCIHRLAPLSLGRCEGEKLRCMYHGLLYDRTGCVIEVPGQDKIPSSLHVRSYPVIERHKWIWIWMGGVSQANETLIPSVIPPIGLEHPDYIYGHGYLDFAAEARLINDNLLDLSHVSFLHAESFRLGETWTRERPQVTQLERSVRSERWFKNQGFNGSLDFKIPVDTYFVQELFIPGVLLMTARSYSGGTADALNGQQPSDFRRPPESSSTQYSFSIQAVTPLTCKTARYFYIVGDRRRGDETSYDMTTYEKGFAEDKMMIEAQQRNIDTAPSRRFMPTSADRGVVLFNRLIERMAGEEGRSGESITSDGPPHGSDKKESDCIDEGDCR

Samples

Sample ID Description Type Environment
1 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
2 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
3 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
4 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
5 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
31 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
46 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
47 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
48 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
51 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
52 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
53 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
54 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
55 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
56 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
57 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
58 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
59 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
60 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
61 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
62 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
63 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
64 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
65 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
66 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
67 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
68 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
71 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
72 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
73 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
74 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
75 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
76 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
77 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
78 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
79 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
80 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
81 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
82 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
85 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
92 3300049850 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control Metagenome Rhizosphere
93 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
94 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
95 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
96 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
97 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
98 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
99 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
100 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
101 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
102 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
103 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
104 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
107 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
108 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
109 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.52
Metatranscriptomes 0
Isolates 4.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.93
Nodule 0
Rhizoplane 5.22
Rhizosphere 67.16
Stem 0
Stem Tuber 0
Unclassified 12.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10131884 3300003322 Bacteria 1554
2 rootL2_10205313 3300003322 Bacteria 2454
3 JGI25405J52794_10018443 3300003911 Bacteria 1393
4 Ga0070658_10001481 3300005327 Bacteria 19954
5 Ga0070683_100058539 3300005329 Bacteria 3580
6 Ga0070660_100366703 3300005339 Bacteria 1188
7 Ga0070675_100232429 3300005354 Bacteria 1609
8 Ga0070675_100500119 3300005354 Unclassified 1095
9 Ga0070671_100028445 3300005355 Bacteria 4603
10 Ga0070671_100077015 3300005355 Bacteria 2787
11 Ga0070674_100001224 3300005356 Bacteria 13484
12 Ga0070678_100421279 3300005456 Bacteria 1164
13 Ga0070665_100004876 3300005548 Bacteria 13935
14 Ga0068855_100019765 3300005563 Bacteria 8089
15 Ga0068857_100462347 3300005577 Bacteria 1187
16 Ga0068859_100000612 3300005617 Bacteria 35799
17 Ga0068859_100081020 3300005617 Bacteria 3288
18 Ga0068863_100002721 3300005841 Bacteria 17465
19 Ga0068860_100000848 3300005843 Bacteria 34178
20 Ga0068862_100000148 3300005844 Bacteria 79789
21 Ga0081455_10000280 3300005937 Bacteria 67482
22 Ga0075362_10010743 3300006177 Bacteria 3585
23 Ga0097620_100081019 3300006931 Bacteria 3288
24 Ga0105240_10001283 3300009093 Bacteria 43463
25 Ga0105240_10042734 3300009093 Bacteria 5773
26 Ga0105248_10022844 3300009177 Bacteria 6945
27 Ga0105237_10013199 3300009545 Bacteria 8667
28 Ga0105237_10014060 3300009545 Bacteria 8375
29 Ga0105249_10000056 3300009553 Bacteria 160443
30 Ga0105249_10145660 3300009553 Bacteria 2275
31 Ga0163163_10014682 3300014325 Bacteria 7202
32 Ga0163163_10037876 3300014325 Bacteria 4694
33 Ga0163163_10050692 3300014325 Bacteria 4088
34 Ga0163163_10061330 3300014325 Bacteria 3726
35 Ga0163163_10101553 3300014325 Plasmid 2898
36 Ga0163163_10149133 3300014325 Unclassified 2383
37 Ga0163163_10176860 3300014325 Unclassified 2181
38 Ga0163163_10226997 3300014325 Bacteria 1916
39 Ga0213876_10025131 3300021384 Bacteria 3144
40 Ga0209147_101043 3300025229 Bacteria 11789
41 Ga0209257_1011808 3300025304 Bacteria 4141
42 Ga0207695_10214158 3300025913 Bacteria 1836
43 Ga0207644_10008833 3300025931 Bacteria 6598
44 Ga0207669_10000482 3300025937 Bacteria 17307
45 Ga0207667_10027427 3300025949 Bacteria 6199
46 Ga0207712_10000015 3300025961 Bacteria 346689
47 Ga0207702_10378083 3300026078 Bacteria 1361
48 Ga0207641_10002640 3300026088 Bacteria 16402
49 Ga0207641_10034582 3300026088 Bacteria 4205
50 Ga0207698_10267661 3300026142 Bacteria 1573
51 Ga0268266_10018690 3300028379 Bacteria 5905
52 Ga0268265_10000168 3300028380 Bacteria 79798
53 Ga0268264_10000756 3300028381 Bacteria 36196
54 Ga0265338_10050791 3300028800 Bacteria 3743
55 Ga0307508_10005938 3300031616 Bacteria 11519
56 Ga0307413_10170631 3300031824 Bacteria 1539
57 Ga0307412_10059285 3300031911 Bacteria 2564
58 Ga0307409_100134048 3300031995 Bacteria 2122
59 Ga0307416_100160537 3300032002 Bacteria 2077
60 Ga0307414_10102341 3300032004 Bacteria 2158
61 Ga0307414_10196857 3300032004 Bacteria 1635
62 Ga0373931_0155897 3300035691 Bacteria 1335
63 Ga0436365_0702966 3300039437 Bacteria 13421
64 Ga0439448_0033600 3300042005 Bacteria 1636
65 Ga0466969_0021580 3300044656 Bacteria 3328
66 Ga0466966_0056533 3300044684 Bacteria 2482
67 Ga0466959_0025002 3300045049 Bacteria 4424
68 Ga0466959_0030862 3300045049 Unclassified 3969
69 Ga0495627_000316 3300046453 Bacteria 47453
70 Ga0495638_0006406 3300046460 Bacteria 8567
71 Ga0495583_0000033 3300046506 Bacteria 246882
72 Ga0495606_0061274 3300046507 Bacteria 2407
73 Ga0495610_0000019 3300046512 Bacteria 351524
74 Ga0495643_0005368 3300046522 Bacteria 8679
75 Ga0495648_0012237 3300046524 Bacteria 6412
76 Ga0495648_0022440 3300046524 Bacteria 4345
77 Ga0495648_0071595 3300046524 Bacteria 2009
78 Ga0495642_0027922 3300046528 Bacteria 2246
79 Ga0495598_0005670 3300046537 Bacteria 2782
80 Ga0495597_0008317 3300046542 Bacteria 5202
81 Ga0495633_0078780 3300046558 Bacteria 1534
82 Ga0495668_0074191 3300046616 Bacteria 1868
83 Ga0495625_0000064 3300046660 Bacteria 174730
84 Ga0495625_0002761 3300046660 Bacteria 18552
85 Ga0495625_0011303 3300046660 Bacteria 7289
86 Ga0495661_0010174 3300046665 Bacteria 6428
87 Ga0495670_0009485 3300046691 Bacteria 4783
88 Ga0495673_0013130 3300047469 Bacteria 4363
89 Ga0495686_0000053 3300047472 Bacteria 259537
90 Ga0495686_0000822 3300047472 Bacteria 40065
91 Ga0496102_0000230 3300048905 Bacteria 73225
92 Ga0496103_0000200 3300048906 Bacteria 59876
93 Ga0496104_0023430 3300048907 Bacteria 5675
94 Ga0496105_0008632 3300048908 Bacteria 7925
95 Ga0496111_0031454 3300048914 Bacteria 3780
96 Ga0496114_0029727 3300048917 Bacteria 4492
97 Ga0496115_0000173 3300048918 Bacteria 59935
98 Ga0496116_0004630 3300048919 Bacteria 13033
99 Ga0496117_0000670 3300048920 Bacteria 54795
100 Ga0496118_0000592 3300048921 Bacteria 59967
101 Ga0496118_0030429 3300048921 Bacteria 4505
102 Ga0496119_0008055 3300048922 Bacteria 9357
103 Ga0496120_0008143 3300048923 Bacteria 7687
104 Ga0496121_0000295 3300048924 Bacteria 103239
105 Ga0496124_0000177 3300048927 Bacteria 128355
106 Ga0496126_0000725 3300048929 Bacteria 59835
107 Ga0496126_0060498 3300048929 Bacteria 3406
108 Ga0495678_053371 3300049459 Bacteria 1552
109 Ga0501033_0145504 3300049570 Bacteria 1712
110 Ga0501249_000259 3300049679 Bacteria 15494
111 Ga0501204_006630 3300049850 Bacteria 1289
112 Ga0500643_000001 3300053087 Bacteria 1440111
113 Ga0500566_0060949 3300053094 Bacteria 2136
114 Ga0500555_000072 3300053103 Bacteria 49690
115 Ga0500556_0000315 3300053104 Bacteria 36531
116 Ga0500557_033195 3300053105 Bacteria 1578
117 Ga0500562_002468 3300053108 Bacteria 4632
118 Ga0500614_013349 3300053123 Bacteria 1804
119 Ga0500642_0000001 3300053130 Bacteria 1468402
120 Ga0500642_0005682 3300053130 Bacteria 4047
121 Ga0500655_000180 3300053133 Bacteria 15316
122 Ga0500577_0010547 3300053142 Bacteria 2725
123 Ga0500590_001161 3300053148 Bacteria 10416
124 Ga0500604_0019946 3300053151 Bacteria 1882
125 Ga0500616_0002310 3300053153 Bacteria 16131
126 Ga0500622_0036939 3300053156 Bacteria 2553
127 Ga0500570_011057 3300053724 Bacteria 5030
128 Ga0500645_000570 3300053730 Bacteria 24107

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053123 Ga0500614_013349 Ga0500614_013349_24_872 265
2 3300014325 Ga0163163_10149133 Ga0163163_101491332 295
3 3300014325 Ga0163163_10061330 Ga0163163_100613304 314
4 3300053156 Ga0500622_0036939 Ga0500622_0036939_853_1875 322
5 3300014325 Ga0163163_10037876 Ga0163163_100378763 328
6 3300053142 Ga0500577_0010547 Ga0500577_0010547_314_1327 329
7 3300046542 Ga0495597_0008317 Ga0495597_0008317_3299_4348 331
8 3300053094 Ga0500566_0060949 Ga0500566_0060949_816_1865 331
9 3300053130 Ga0500642_0005682 Ga0500642_0005682_1281_2330 331
10 3300053133 Ga0500655_000180 Ga0500655_000180_10547_11596 331
11 3300053148 Ga0500590_001161 Ga0500590_001161_6761_7810 331
12 3300053724 Ga0500570_011057 Ga0500570_011057_3601_4650 331
13 3300003322 rootL2_10205313 rootL2_102053133 332
14 3300047472 Ga0495686_0000053 Ga0495686_0000053_131732_132781 332
15 3300048921 Ga0496118_0030429 Ga0496118_0030429_937_1986 332
16 3300049570 Ga0501033_0145504 Ga0501033_0145504_457_1506 332
17 3300005354 Ga0070675_100232429 Ga0070675_1002324291 333
18 3300005355 Ga0070671_100028445 Ga0070671_1000284454 333
19 3300025931 Ga0207644_10008833 Ga0207644_100088335 333
20 3300035691 Ga0373931_0155897 Ga0373931_0155897_272_1324 333
21 3300042005 Ga0439448_0033600 Ga0439448_0033600_177_1226 333
22 3300046528 Ga0495642_0027922 Ga0495642_0027922_640_1743 335
23 iso_pu_bacteria 8057101203 8057102793 335
24 3300046507 Ga0495606_0061274 Ga0495606_0061274_180_1229 336
25 iso_pu_bacteria 2582581305 2585262815 336
26 iso_pu_bacteria 2928959182 2928962948 336
27 3300014325 Ga0163163_10101553 Ga0163163_101015532 337
28 iso_pu_bacteria 2643221588 2643949682 337
29 iso_pu_bacteria 2919138771 2919141011 337
30 iso_pu_bacteria 2928100450 2928104317 337
31 3300005355 Ga0070671_100077015 Ga0070671_1000770153 338
32 3300014325 Ga0163163_10014682 Ga0163163_100146823 338
33 3300014325 Ga0163163_10176860 Ga0163163_101768603 338
34 3300021384 Ga0213876_10025131 Ga0213876_100251312 338
35 3300039437 Ga0436365_0702966 Ga0436365_0702966_6880_7953 338
36 3300006177 Ga0075362_10010743 Ga0075362_100107433 339
37 3300009093 Ga0105240_10042734 Ga0105240_100427344 339
38 3300009545 Ga0105237_10013199 Ga0105237_100131992 339
39 3300014325 Ga0163163_10050692 Ga0163163_100506922 339
40 3300014325 Ga0163163_10226997 Ga0163163_102269972 340
41 3300028800 Ga0265338_10050791 Ga0265338_100507913 340
42 3300031616 Ga0307508_10005938 Ga0307508_1000593811 340
43 3300046524 Ga0495648_0071595 Ga0495648_0071595_686_1735 340
44 3300046537 Ga0495598_0005670 Ga0495598_0005670_411_1466 340
45 3300046660 Ga0495625_0000064 Ga0495625_0000064_96171_97244 340
46 3300046660 Ga0495625_0011303 Ga0495625_0011303_3385_4434 340
47 3300003322 rootL2_10131884 rootL2_101318842 341
48 3300003911 JGI25405J52794_10018443 JGI25405J52794_100184432 341
49 3300005327 Ga0070658_10001481 Ga0070658_100014813 341
50 3300005329 Ga0070683_100058539 Ga0070683_1000585392 341
51 3300005339 Ga0070660_100366703 Ga0070660_1003667031 341
52 3300005354 Ga0070675_100500119 Ga0070675_1005001191 341
53 3300005356 Ga0070674_100001224 Ga0070674_10000122410 341
54 3300005456 Ga0070678_100421279 Ga0070678_1004212791 341
55 3300005548 Ga0070665_100004876 Ga0070665_10000487612 341
56 3300005563 Ga0068855_100019765 Ga0068855_1000197658 341
57 3300005577 Ga0068857_100462347 Ga0068857_1004623471 341
58 3300005617 Ga0068859_100000612 Ga0068859_10000061213 341
59 3300005617 Ga0068859_100081020 Ga0068859_1000810201 341
60 3300005841 Ga0068863_100002721 Ga0068863_10000272115 341
61 3300005843 Ga0068860_100000848 Ga0068860_10000084819 341
62 3300005844 Ga0068862_100000148 Ga0068862_10000014870 341
63 3300005937 Ga0081455_10000280 Ga0081455_1000028016 341
64 3300006931 Ga0097620_100081019 Ga0097620_1000810191 341
65 3300009093 Ga0105240_10001283 Ga0105240_1000128338 341
66 3300009177 Ga0105248_10022844 Ga0105248_100228445 341
67 3300009545 Ga0105237_10014060 Ga0105237_100140608 341
68 3300009553 Ga0105249_10000056 Ga0105249_1000005642 341
69 3300009553 Ga0105249_10145660 Ga0105249_101456602 341
70 3300025229 Ga0209147_101043 Ga0209147_1010435 341
71 3300025304 Ga0209257_1011808 Ga0209257_10118083 341
72 3300025913 Ga0207695_10214158 Ga0207695_102141581 341
73 3300025937 Ga0207669_10000482 Ga0207669_1000048216 341
74 3300025949 Ga0207667_10027427 Ga0207667_100274275 341
75 3300025961 Ga0207712_10000015 Ga0207712_10000015252 341
76 3300026078 Ga0207702_10378083 Ga0207702_103780831 341
77 3300026088 Ga0207641_10002640 Ga0207641_1000264016 341
78 3300026088 Ga0207641_10034582 Ga0207641_100345823 341
79 3300026142 Ga0207698_10267661 Ga0207698_102676612 341
80 3300028379 Ga0268266_10018690 Ga0268266_100186903 341
81 3300028380 Ga0268265_10000168 Ga0268265_1000016810 341
82 3300028381 Ga0268264_10000756 Ga0268264_1000075615 341
83 3300031824 Ga0307413_10170631 Ga0307413_101706312 341
84 3300031911 Ga0307412_10059285 Ga0307412_100592855 341
85 3300031995 Ga0307409_100134048 Ga0307409_1001340482 341
86 3300032002 Ga0307416_100160537 Ga0307416_1001605372 341
87 3300032004 Ga0307414_10102341 Ga0307414_101023412 341
88 3300032004 Ga0307414_10196857 Ga0307414_101968572 341
89 3300044656 Ga0466969_0021580 Ga0466969_0021580_1734_2819 341
90 3300044684 Ga0466966_0056533 Ga0466966_0056533_352_1437 341
91 3300045049 Ga0466959_0025002 Ga0466959_0025002_2604_3689 341
92 3300045049 Ga0466959_0030862 Ga0466959_0030862_1232_2317 341
93 3300046453 Ga0495627_000316 Ga0495627_000316_2824_3867 341
94 3300046460 Ga0495638_0006406 Ga0495638_0006406_5058_6107 341
95 3300046506 Ga0495583_0000033 Ga0495583_0000033_137428_138477 341
96 3300046512 Ga0495610_0000019 Ga0495610_0000019_150430_151512 341
97 3300046522 Ga0495643_0005368 Ga0495643_0005368_6297_7346 341
98 3300046524 Ga0495648_0012237 Ga0495648_0012237_2506_3549 341
99 3300046524 Ga0495648_0022440 Ga0495648_0022440_476_1537 341
100 3300046558 Ga0495633_0078780 Ga0495633_0078780_165_1208 341
101 3300046616 Ga0495668_0074191 Ga0495668_0074191_693_1769 341
102 3300046660 Ga0495625_0002761 Ga0495625_0002761_8788_9864 341
103 3300046665 Ga0495661_0010174 Ga0495661_0010174_676_1725 341
104 3300046691 Ga0495670_0009485 Ga0495670_0009485_2079_3128 341
105 3300047469 Ga0495673_0013130 Ga0495673_0013130_1811_2854 341
106 3300047472 Ga0495686_0000822 Ga0495686_0000822_19292_20341 341
107 3300048905 Ga0496102_0000230 Ga0496102_0000230_30577_31602 341
108 3300048906 Ga0496103_0000200 Ga0496103_0000200_41370_42395 341
109 3300048907 Ga0496104_0023430 Ga0496104_0023430_1410_2435 341
110 3300048908 Ga0496105_0008632 Ga0496105_0008632_4851_5876 341
111 3300048914 Ga0496111_0031454 Ga0496111_0031454_35_1060 341
112 3300048917 Ga0496114_0029727 Ga0496114_0029727_238_1263 341
113 3300048918 Ga0496115_0000173 Ga0496115_0000173_41400_42425 341
114 3300048919 Ga0496116_0004630 Ga0496116_0004630_8852_9877 341
115 3300048920 Ga0496117_0000670 Ga0496117_0000670_12513_13538 341
116 3300048921 Ga0496118_0000592 Ga0496118_0000592_41401_42426 341
117 3300048922 Ga0496119_0008055 Ga0496119_0008055_5259_6284 341
118 3300048923 Ga0496120_0008143 Ga0496120_0008143_3544_4569 341
119 3300048924 Ga0496121_0000295 Ga0496121_0000295_41270_42295 341
120 3300048927 Ga0496124_0000177 Ga0496124_0000177_109826_110851 341
121 3300048929 Ga0496126_0000725 Ga0496126_0000725_41306_42331 341
122 3300048929 Ga0496126_0060498 Ga0496126_0060498_213_1268 341
123 3300049459 Ga0495678_053371 Ga0495678_053371_28_1071 341
124 3300049679 Ga0501249_000259 Ga0501249_000259_6303_7364 341
125 3300049850 Ga0501204_006630 Ga0501204_006630_97_1158 341
126 3300053087 Ga0500643_000001 Ga0500643_000001_830314_831378 341
127 3300053103 Ga0500555_000072 Ga0500555_000072_14851_15900 341
128 3300053104 Ga0500556_0000315 Ga0500556_0000315_9918_10994 341
129 3300053105 Ga0500557_033195 Ga0500557_033195_154_1209 341
130 3300053108 Ga0500562_002468 Ga0500562_002468_1707_2771 341
131 3300053130 Ga0500642_0000001 Ga0500642_0000001_906498_907568 341
132 3300053151 Ga0500604_0019946 Ga0500604_0019946_114_1163 341
133 3300053153 Ga0500616_0002310 Ga0500616_0002310_6686_7741 341
134 3300053730 Ga0500645_000570 Ga0500645_000570_10717_11805 341

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00355

Rieske

Rieske [2Fe-2S] domain

7

100

0.92

PF19112

VanA_C

Vanillate O-demethylase oxygenase C-terminal domain

146

345

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5bok-assembly1.cif.gz_A ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. strain ds2 0.9088 8 111
2qpz-assembly1.cif.gz_A naphthalene 1,2-dioxygenase rieske ferredoxin 0.9042 8 112
3gce-assembly1.cif.gz_A ferredoxin of carbazole 1,9a-dioxygenase from nocardioides aromaticivorans ic177 0.8896 7 109
4emj-assembly1.cif.gz_B complex between the reductase and ferredoxin components of toluene dioxygenase 0.8784 7 111
2yvj-assembly1.cif.gz_B crystal structure of the ferredoxin-ferredoxin reductase (bpha3-bpha4)complex 0.8781 7 109
ID Description Score Start End Superfamily
3gobA01 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9492 3 123 2.102.10.10
af_Q6K689_84_212_2.102.10.10 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9196 5 123 2.102.10.10
af_Q6DHJ3_118_252_2.102.10.10 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9194 6 123 2.102.10.10
af_Q2FVL9_1_103_2.102.10.10 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9148 8 109 2.102.10.10
5bokA00 Mainly Beta;3-layer Sandwich;Rieske Iron-sulfur Protein;Rieske [2Fe-2S] iron-sulphur domain 0.9088 8 111 2.102.10.10
ID Description Score Start End GO Terms
AF-A0A840XAU0-F1-model_v4 deleted 0.9832 1 338
AF-A0A4Q3CEB9-F1-model_v4 Aromatic ring-hydroxylating dioxygenase subunit alpha 0.9727 1 144 GO:0004497
GO:0016705
GO:0046872
GO:0051213
GO:0051537
AF-A0A840XAU0-F1-model_v4 deleted 0.9718 1 338
AF-A0A418Y5N6-F1-model_v4 Aromatic ring-hydroxylating dioxygenase subunit alpha 0.9702 1 123 GO:0004497
GO:0016705
GO:0046872
GO:0051213
GO:0051537
AF-W7W2G8-F1-model_v4 Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 (EC 1.14.14.-) 0.968 3 187 GO:0004497
GO:0009056
GO:0016705
GO:0046872
GO:0051537

Feature Viewer

pLDDT pTM Quality
93.23 0.91 High
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Predicted Structure (AlphaFold2)

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