F158950

General Info

Members Datasets Scaffolds Average Seq Length
134 92 130 247

Family's Representative Sequence

Representative Sequence 3300005435|Ga0070714_100022323|Ga0070714_1000223237
Length 280
Sequence MRRGEERCNADTARRAERHDRSGMTGLQIRERLSPNHTSRGEAPNIRPINMLVLHYTGMQSAEAAIERLCDPEARVSAHYVVEEDGTLWRLVPEQRRAFHAGVSCWQGEPDLNWVSIGIEIVNPGHEWGYREFPEPQMAVVEQLCRDLVARYRIPATRIVGHSDIAPDRKSDPGELFDWPRLARAGIGLWPERSPETARRRGRAVGVIERAGALSDLARIGYCVTSATETVALAAFQRRFRPERWDGLCDAETCSRLRQVRIAFEDARAAADVARRRRFN

Samples

Sample ID Description Type Environment
1 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
2 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
3 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
34 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
53 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
54 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
55 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
56 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
57 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
58 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
59 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
60 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
61 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
66 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
67 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
68 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
69 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
70 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
71 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
74 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
81 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
84 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
88 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
89 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
90 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
91 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
92 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.01
Metatranscriptomes 0
Isolates 2.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.75
Nodule 0
Rhizoplane 5.22
Rhizosphere 82.84
Stem 0
Stem Tuber 0
Unclassified 11.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100344617 3300005331 Bacteria 1308
2 Ga0070680_100019966 3300005336 Bacteria 5311
3 Ga0070671_100030500 3300005355 Bacteria 4449
4 Ga0070671_100314178 3300005355 Bacteria 1335
5 Ga0070673_100345049 3300005364 Bacteria 1320
6 Ga0070709_10018397 3300005434 Bacteria 4023
7 Ga0070714_100022323 3300005435 Bacteria 5189
8 Ga0070714_100054632 3300005435 Bacteria 3412
9 Ga0070714_100226587 3300005435 Bacteria 1720
10 Ga0070710_10219201 3300005437 Bacteria 1210
11 Ga0070711_100591534 3300005439 Bacteria 925
12 Ga0070708_100295121 3300005445 Bacteria 1526
13 Ga0070681_10010891 3300005458 Bacteria 8991
14 Ga0070681_10013112 3300005458 Bacteria 8233
15 Ga0070681_10043827 3300005458 Bacteria 4479
16 Ga0070681_10422456 3300005458 Bacteria 1245
17 Ga0070706_100053732 3300005467 Bacteria 3718
18 Ga0070706_100506407 3300005467 Bacteria 1123
19 Ga0070706_100636125 3300005467 Bacteria 990
20 Ga0070707_100128695 3300005468 Bacteria 2461
21 Ga0070698_100001690 3300005471 Bacteria 24619
22 Ga0070698_100096777 3300005471 Bacteria 2928
23 Ga0070699_100192016 3300005518 Bacteria 1814
24 Ga0070699_100753764 3300005518 Unclassified 890
25 Ga0070679_100012460 3300005530 Bacteria 8126
26 Ga0070679_100084463 3300005530 Bacteria 3163
27 Ga0070697_100056675 3300005536 Bacteria 3188
28 Ga0070665_100677782 3300005548 Bacteria 1044
29 Ga0068856_100060239 3300005614 Bacteria 3750
30 Ga0070717_10001728 3300006028 Bacteria 15238
31 Ga0070716_100316480 3300006173 Bacteria 1092
32 Ga0070712_100182375 3300006175 Bacteria 1637
33 Ga0070712_100346599 3300006175 Bacteria 1214
34 Ga0099795_10025868 3300007788 Bacteria 1972
35 Ga0105240_10043625 3300009093 Bacteria 5704
36 Ga0111539_10286474 3300009094 Bacteria 1917
37 Ga0099796_10004305 3300010159 Unclassified 3428
38 Ga0157370_10031082 3300013104 Bacteria 5227
39 Ga0157369_10863324 3300013105 Bacteria 929
40 Ga0157376_10115524 3300014969 Bacteria 2370
41 Ga0213875_10001612 3300021388 Bacteria 14262
42 Ga0213875_10015457 3300021388 Bacteria 3713
43 Ga0213871_10032673 3300021441 Bacteria 1365
44 Ga0207699_10129044 3300025906 Bacteria 1646
45 Ga0207684_10047774 3300025910 Bacteria 3630
46 Ga0207707_10014853 3300025912 Bacteria 6781
47 Ga0207707_10034883 3300025912 Bacteria 4401
48 Ga0207707_10115601 3300025912 Bacteria 2345
49 Ga0207695_10051865 3300025913 Bacteria 4303
50 Ga0207693_10018810 3300025915 Bacteria 5496
51 Ga0207693_10048984 3300025915 Bacteria 3318
52 Ga0207663_10067113 3300025916 Bacteria 2299
53 Ga0207660_10080243 3300025917 Bacteria 2395
54 Ga0207652_10019151 3300025921 Bacteria 5625
55 Ga0207652_10080914 3300025921 Bacteria 2841
56 Ga0207646_10090933 3300025922 Bacteria 2732
57 Ga0207700_10010310 3300025928 Bacteria 5888
58 Ga0207700_10083465 3300025928 Bacteria 2501
59 Ga0207700_10117928 3300025928 Bacteria 2147
60 Ga0207664_10132537 3300025929 Bacteria 2099
61 Ga0207664_10269481 3300025929 Bacteria 1491
62 Ga0207664_10338274 3300025929 Bacteria 1330
63 Ga0207644_10072209 3300025931 Bacteria 2527
64 Ga0207665_10070517 3300025939 Bacteria 2385
65 Ga0207665_10359245 3300025939 Bacteria 1101
66 Ga0207679_10338403 3300025945 Bacteria 1308
67 Ga0207651_10166515 3300025960 Bacteria 1734
68 Ga0207702_10014605 3300026078 Bacteria 6518
69 Ga0209179_1017613 3300027512 Bacteria 1356
70 Ga0265316_10063111 3300031344 Bacteria 2874
71 Ga0373934_0053611 3300035086 Unclassified 1600
72 Ga0373936_0129421 3300035113 Bacteria 1084
73 Ga0373941_0051898 3300035115 Bacteria 1306
74 Ga0373945_0010792 3300035116 Bacteria 3011
75 Ga0373953_0036864 3300035117 Unclassified 1927
76 Ga0373954_0039402 3300035118 Bacteria 2199
77 Ga0373955_0097181 3300035172 Unclassified 1686
78 Ga0373935_0253420 3300035692 Bacteria 1232
79 Ga0373933_0003027 3300035724 Bacteria 9378
80 Ga0373933_0176766 3300035724 Bacteria 1360
81 Ga0373933_0242388 3300035724 Unclassified 1159
82 Ga0373947_0082471 3300035725 Bacteria 1993
83 Ga0373947_0147086 3300035725 Bacteria 1515
84 Ga0373937_0041773 3300036401 Bacteria 4183
85 Ga0373937_0082458 3300036401 Bacteria 2976
86 Ga0373937_0688746 3300036401 Bacteria 968
87 Ga0436364_0516241 3300037853 Bacteria 31154
88 Ga0436364_0566600 3300037853 Bacteria 1305
89 Ga0436364_0654577 3300037853 Bacteria 1605
90 Ga0436364_1121039 3300037853 Bacteria 14728
91 Ga0436364_1524074 3300037853 Bacteria 28504
92 Ga0436365_0214594 3300039437 Bacteria 1749
93 Ga0436365_0571618 3300039437 Bacteria 936
94 Ga0436365_0896296 3300039437 Bacteria 3993
95 Ga0436360_0576023 3300039438 Bacteria 1222
96 Ga0436360_1100288 3300039438 Bacteria 1623
97 Ga0436360_1193682 3300039438 Bacteria 781
98 Ga0436361_1013998 3300039447 Bacteria 1368
99 Ga0436363_0467887 3300039450 Bacteria 982
100 Ga0436363_1315328 3300039450 Bacteria 1969
101 Ga0436362_0526778 3300039453 Bacteria 1336
102 Ga0436362_0673469 3300039453 Bacteria 2580
103 Ga0436362_0771023 3300039453 Bacteria 4247
104 Ga0466963_0038218 3300044694 Bacteria 3138
105 Ga0466960_0106428 3300044901 Bacteria 1451
106 Ga0466967_0236327 3300045976 Bacteria 1742
107 Ga0466967_0237244 3300045976 Bacteria 1738
108 Ga0495580_0069259 3300046472 Bacteria 2466
109 Ga0495618_0186961 3300046514 Bacteria 1315
110 Ga0495628_0080440 3300046516 Bacteria 2533
111 Ga0495652_0369932 3300046529 Unclassified 1022
112 Ga0495586_0026866 3300046535 Bacteria 3080
113 Ga0495667_0058609 3300046559 Bacteria 2529
114 Ga0495635_0305133 3300046663 Bacteria 1067
115 Ga0495604_0339617 3300047317 Unclassified 1000
116 Ga0495680_0056264 3300047322 Bacteria 3046
117 Ga0496101_0222018 3300048904 Bacteria 1467
118 Ga0496104_0020081 3300048907 Bacteria 6120
119 Ga0496104_0207159 3300048907 Bacteria 1873
120 Ga0496104_0418104 3300048907 Bacteria 1253
121 Ga0496112_0402276 3300048915 Bacteria 1309
122 Ga0496112_0713497 3300048915 Bacteria 930
123 Ga0496113_0136902 3300048916 Bacteria 1924
124 Ga0501070_0621173 3300049586 Bacteria 860
125 Ga0501083_0218740 3300049744 Unclassified 1241
126 nmdc:mga0rr50_69110_c1 3300050513 Bacteria 2687
127 nmdc:mga08x19_183897_c1 3300050514 Bacteria 1428
128 Ga0495601_0019494 3300053077 Bacteria 4137
129 Ga0495619_0216827 3300053085 Unclassified 1325
130 Ga0500642_0001511 3300053130 Bacteria 6710

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039438 Ga0436360_0576023 Ga0436360_0576023_579_1202 199
2 3300035086 Ga0373934_0053611 Ga0373934_0053611_907_1557 216
3 3300035724 Ga0373933_0242388 Ga0373933_0242388_465_1115 216
4 3300036401 Ga0373937_0688746 Ga0373937_0688746_52_702 216
5 3300047317 Ga0495604_0339617 Ga0495604_0339617_283_933 216
6 3300039438 Ga0436360_1100288 Ga0436360_1100288_833_1591 219
7 3300039453 Ga0436362_0526778 Ga0436362_0526778_523_1281 219
8 3300005458 Ga0070681_10422456 Ga0070681_104224562 221
9 3300039450 Ga0436363_0467887 Ga0436363_0467887_258_956 221
10 3300046535 Ga0495586_0026866 Ga0495586_0026866_159_884 221
11 3300044901 Ga0466960_0106428 Ga0466960_0106428_380_1063 224
12 3300035724 Ga0373933_0176766 Ga0373933_0176766_630_1328 225
13 iso_pu_bacteria 2894772417 2894773659 225
14 3300039437 Ga0436365_0571618 Ga0436365_0571618_200_889 226
15 3300053130 Ga0500642_0001511 Ga0500642_0001511_1340_2035 226
16 iso_pu_bacteria 2929199973 2929204597 227
17 iso_pu_bacteria 8055909800 8055914571 227
18 3300005336 Ga0070680_100019966 Ga0070680_1000199664 228
19 3300005458 Ga0070681_10013112 Ga0070681_100131126 228
20 3300005530 Ga0070679_100012460 Ga0070679_1000124605 228
21 3300009093 Ga0105240_10043625 Ga0105240_100436254 228
22 3300013104 Ga0157370_10031082 Ga0157370_100310824 228
23 3300013105 Ga0157369_10863324 Ga0157369_108633241 228
24 3300025912 Ga0207707_10014853 Ga0207707_100148534 228
25 3300025913 Ga0207695_10051865 Ga0207695_100518652 228
26 3300025917 Ga0207660_10080243 Ga0207660_100802432 228
27 3300025921 Ga0207652_10019151 Ga0207652_100191514 228
28 3300045976 Ga0466967_0237244 Ga0466967_0237244_60_767 228
29 3300049586 Ga0501070_0621173 Ga0501070_0621173_142_843 228
30 3300045976 Ga0466967_0236327 Ga0466967_0236327_932_1645 232
31 3300046514 Ga0495618_0186961 Ga0495618_0186961_45_752 232
32 3300046516 Ga0495628_0080440 Ga0495628_0080440_1688_2395 232
33 3300046559 Ga0495667_0058609 Ga0495667_0058609_1180_1887 232
34 3300047322 Ga0495680_0056264 Ga0495680_0056264_263_970 232
35 3300053077 Ga0495601_0019494 Ga0495601_0019494_2577_3284 232
36 3300021388 Ga0213875_10001612 Ga0213875_1000161210 234
37 3300025912 Ga0207707_10115601 Ga0207707_101156013 234
38 3300037853 Ga0436364_1524074 Ga0436364_1524074_13562_14296 234
39 3300039437 Ga0436365_0214594 Ga0436365_0214594_665_1372 235
40 3300039438 Ga0436360_1193682 Ga0436360_1193682_15_761 235
41 3300021388 Ga0213875_10015457 Ga0213875_100154572 236
42 3300037853 Ga0436364_0516241 Ga0436364_0516241_6491_7201 236
43 3300039453 Ga0436362_0673469 Ga0436362_0673469_492_1202 236
44 3300049744 Ga0501083_0218740 Ga0501083_0218740_225_1022 237
45 3300031344 Ga0265316_10063111 Ga0265316_100631113 238
46 3300006173 Ga0070716_100316480 Ga0070716_1003164801 239
47 3300006175 Ga0070712_100182375 Ga0070712_1001823753 239
48 3300025916 Ga0207663_10067113 Ga0207663_100671133 239
49 3300025929 Ga0207664_10269481 Ga0207664_102694812 239
50 3300035117 Ga0373953_0036864 Ga0373953_0036864_636_1358 240
51 3300035118 Ga0373954_0039402 Ga0373954_0039402_1446_2168 240
52 3300035172 Ga0373955_0097181 Ga0373955_0097181_124_846 240
53 3300035724 Ga0373933_0003027 Ga0373933_0003027_4204_4926 240
54 3300036401 Ga0373937_0041773 Ga0373937_0041773_686_1408 240
55 3300046529 Ga0495652_0369932 Ga0495652_0369932_169_891 240
56 3300046663 Ga0495635_0305133 Ga0495635_0305133_273_995 240
57 3300053085 Ga0495619_0216827 Ga0495619_0216827_213_935 240
58 iso_pu_bacteria 2643221663 2644352784 240
59 3300005445 Ga0070708_100295121 Ga0070708_1002951211 241
60 3300005467 Ga0070706_100053732 Ga0070706_1000537323 241
61 3300005468 Ga0070707_100128695 Ga0070707_1001286952 241
62 3300005471 Ga0070698_100001690 Ga0070698_1000016904 241
63 3300005518 Ga0070699_100753764 Ga0070699_1007537641 241
64 3300005536 Ga0070697_100056675 Ga0070697_1000566753 241
65 3300006028 Ga0070717_10001728 Ga0070717_100017283 241
66 3300025910 Ga0207684_10047774 Ga0207684_100477742 241
67 3300025922 Ga0207646_10090933 Ga0207646_100909333 241
68 3300048915 Ga0496112_0402276 Ga0496112_0402276_18_767 241
69 3300005471 Ga0070698_100096777 Ga0070698_1000967773 242
70 3300005434 Ga0070709_10018397 Ga0070709_100183974 245
71 3300005435 Ga0070714_100054632 Ga0070714_1000546321 245
72 3300006175 Ga0070712_100346599 Ga0070712_1003465991 245
73 3300021441 Ga0213871_10032673 Ga0213871_100326732 245
74 3300025915 Ga0207693_10018810 Ga0207693_100188105 245
75 3300025915 Ga0207693_10048984 Ga0207693_100489842 245
76 3300025928 Ga0207700_10083465 Ga0207700_100834652 245
77 3300025929 Ga0207664_10338274 Ga0207664_103382742 245
78 3300025939 Ga0207665_10070517 Ga0207665_100705172 245
79 3300039447 Ga0436361_1013998 Ga0436361_1013998_501_1289 245
80 3300039450 Ga0436363_1315328 Ga0436363_1315328_355_1149 245
81 3300005355 Ga0070671_100314178 Ga0070671_1003141781 247
82 3300048904 Ga0496101_0222018 Ga0496101_0222018_356_1156 248
83 3300048907 Ga0496104_0020081 Ga0496104_0020081_5099_5899 248
84 3300037853 Ga0436364_0654577 Ga0436364_0654577_60_827 253
85 3300005331 Ga0070670_100344617 Ga0070670_1003446171 254
86 3300005355 Ga0070671_100030500 Ga0070671_1000305003 254
87 3300005364 Ga0070673_100345049 Ga0070673_1003450491 254
88 3300005435 Ga0070714_100022323 Ga0070714_1000223237 254
89 3300005435 Ga0070714_100226587 Ga0070714_1002265872 254
90 3300005437 Ga0070710_10219201 Ga0070710_102192012 254
91 3300005439 Ga0070711_100591534 Ga0070711_1005915341 254
92 3300005458 Ga0070681_10010891 Ga0070681_100108918 254
93 3300005458 Ga0070681_10043827 Ga0070681_100438275 254
94 3300005467 Ga0070706_100506407 Ga0070706_1005064071 254
95 3300005467 Ga0070706_100636125 Ga0070706_1006361252 254
96 3300005518 Ga0070699_100192016 Ga0070699_1001920161 254
97 3300005530 Ga0070679_100084463 Ga0070679_1000844633 254
98 3300005548 Ga0070665_100677782 Ga0070665_1006777822 254
99 3300005614 Ga0068856_100060239 Ga0068856_1000602394 254
100 3300007788 Ga0099795_10025868 Ga0099795_100258683 254
101 3300009094 Ga0111539_10286474 Ga0111539_102864742 254
102 3300010159 Ga0099796_10004305 Ga0099796_100043054 254
103 3300014969 Ga0157376_10115524 Ga0157376_101155243 254
104 3300025906 Ga0207699_10129044 Ga0207699_101290442 254
105 3300025912 Ga0207707_10034883 Ga0207707_100348833 254
106 3300025921 Ga0207652_10080914 Ga0207652_100809143 254
107 3300025928 Ga0207700_10010310 Ga0207700_100103104 254
108 3300025928 Ga0207700_10117928 Ga0207700_101179282 254
109 3300025929 Ga0207664_10132537 Ga0207664_101325372 254
110 3300025931 Ga0207644_10072209 Ga0207644_100722092 254
111 3300025939 Ga0207665_10359245 Ga0207665_103592451 254
112 3300025945 Ga0207679_10338403 Ga0207679_103384032 254
113 3300025960 Ga0207651_10166515 Ga0207651_101665152 254
114 3300026078 Ga0207702_10014605 Ga0207702_100146053 254
115 3300027512 Ga0209179_1017613 Ga0209179_10176132 254
116 3300035113 Ga0373936_0129421 Ga0373936_0129421_296_1069 254
117 3300035115 Ga0373941_0051898 Ga0373941_0051898_505_1278 254
118 3300035116 Ga0373945_0010792 Ga0373945_0010792_1067_1840 254
119 3300035692 Ga0373935_0253420 Ga0373935_0253420_435_1208 254
120 3300035725 Ga0373947_0082471 Ga0373947_0082471_1174_1947 254
121 3300035725 Ga0373947_0147086 Ga0373947_0147086_235_1008 254
122 3300036401 Ga0373937_0082458 Ga0373937_0082458_1902_2675 254
123 3300037853 Ga0436364_0566600 Ga0436364_0566600_135_908 254
124 3300037853 Ga0436364_1121039 Ga0436364_1121039_2005_2790 254
125 3300039437 Ga0436365_0896296 Ga0436365_0896296_1904_2677 254
126 3300039453 Ga0436362_0771023 Ga0436362_0771023_965_1738 254
127 3300044694 Ga0466963_0038218 Ga0466963_0038218_557_1330 254
128 3300046472 Ga0495580_0069259 Ga0495580_0069259_1152_1925 254
129 3300048907 Ga0496104_0207159 Ga0496104_0207159_851_1624 254
130 3300048907 Ga0496104_0418104 Ga0496104_0418104_457_1230 254
131 3300048915 Ga0496112_0713497 Ga0496112_0713497_48_821 254
132 3300048916 Ga0496113_0136902 Ga0496113_0136902_126_899 254
133 3300050513 nmdc:mga0rr50_69110_c1 nmdc:mga0rr50_69110_c1_387_1160 254
134 3300050514 nmdc:mga08x19_183897_c1 nmdc:mga08x19_183897_c1_341_1114 254

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01510

Amidase_2

N-acetylmuramoyl-L-alanine amidase

45

175

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2y28-assembly3.cif.gz_C crystal structure of se-met ampd derivative 0.8522 5 162
3d2y-assembly1.cif.gz_A complex of the n-acetylmuramyl-l-alanine amidase amid from e.coli with the substrate anhydro-n-acetylmuramic acid-l-ala-d-gamma-glu-l-lys 0.8367 18 237
4bxj-assembly1.cif.gz_A-2 crystal structure of ampdh3 from pseudomonas aeruginosa 0.8363 18 240
4bxe-assembly1.cif.gz_A crystal structure of ampdh3 from pseudomonas aeruginosa in complex with anhydromuramic pentapeptide 0.8327 18 236
4bol-assembly1.cif.gz_A crystal structure of ampdh2 from pseudomonas aeruginosa in complex with pentapeptide 0.7966 9 236
ID Description Score Start End Superfamily
4bxjA01 Alpha Beta;3-Layer(aba) Sandwich;Lysozyme-like;Peptidoglycan recognition protein-like 0.9035 26 165 3.40.80.10
af_P75820_43_192_3.40.80.10 Alpha Beta;3-Layer(aba) Sandwich;Lysozyme-like;Peptidoglycan recognition protein-like 0.8956 26 165 3.40.80.10
4bpaB01 Alpha Beta;3-Layer(aba) Sandwich;Lysozyme-like;Peptidoglycan recognition protein-like 0.8781 26 164 3.40.80.10
af_P75820_43_192_3.40.80.10 Alpha Beta;3-Layer(aba) Sandwich;Lysozyme-like;Peptidoglycan recognition protein-like 0.8322 26 165 3.40.80.10
4bpaB01 Alpha Beta;3-Layer(aba) Sandwich;Lysozyme-like;Peptidoglycan recognition protein-like 0.8319 26 164 3.40.80.10
ID Description Score Start End GO Terms
AF-A0A520HZP1-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9824 4 128 GO:0005576
GO:0008745
GO:0009253
GO:0009254
GO:0019867
GO:0071555
AF-A0A528V8L5-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.982 6 94 GO:0005576
GO:0008745
GO:0009253
GO:0009254
GO:0019867
GO:0071555
AF-A0A4Q3SQ93-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9816 28 141 GO:0005576
GO:0008745
GO:0009253
GO:0009254
GO:0019867
GO:0071555
AF-A0A7V8AI62-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9801 7 100 GO:0005576
GO:0008745
GO:0009253
GO:0009254
GO:0071555
AF-A0A4R9PIM6-F1-model_v4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.9798 31 131 GO:0005576
GO:0008745
GO:0009253
GO:0009254
GO:0019867
GO:0071555

Feature Viewer

pLDDT pTM Quality
91.2 0.9 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map