F158160

General Info

Members Datasets Scaffolds Average Seq Length
133 105 97 561

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2833709550|2833710185
Length 607
Sequence DAEGDAKETPGLTHEEAAALAHEAVAAQAPVEPQDVPSAPDGIDGFEAARAWLAQDPDGETRAELRDLIGAAETGDEDAIADLADRFAGRLAFGTAGLRGELGAGSNRMNRVLVTQAAAGLAAYLIDKAGADAAAPGAAAAPAVVVGYDGRRNSQIFAHDSTELFAGAGLRAILLPRLLPTPVLAFAVRHLGAAAGVMVTASHNPPNDNGYKVYLGGAEQGSQIVPPADAEIAAHIQRIADAGDIAALPRSLGFEVAPESLIDAYIEETAAVAPAPEGAEGLRWVYTAMHGVGWETFSRILETAGYQAPEPVTAQLEPDGAFPTVAFPNPEEPGAMDLAFETARAAEADLIIANDPDADRLAVAVPDPDAEGGWRRLSGNQIGLLLGWRAARRAKESGAIDGASLACSLVSSPGLQTVAEHYGLGFHATLTGFKWISRAPGLVYGFEEALGYLVNPETVRDKDGISAAVAMLGMVAEARGRGASLHDLMREFDETFGYFASDQISVRVDDLSEIGRIMSALREQHPSSVGDVGVDHIDDLLEGVDDLPPGDVLRLWLVDGSRLIVRPSGTEPKLKLYLDVRGDSADDAAARIGALNAGARALLDQVG

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2643221546 Microbacterium sp. Root53 Isolate Unclassified
4 2643221572 Leifsonia sp. Root60 Isolate Unclassified
5 2643221575 Microbacterium sp. Root61 Isolate Unclassified
6 2643221597 Microbacterium sp. Root180 Isolate Unclassified
7 2643221616 Leifsonia sp. Root227 Isolate Unclassified
8 2643221649 Leifsonia sp. Root4 Isolate Unclassified
9 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
10 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
11 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
12 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
13 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
14 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
15 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
16 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
17 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
18 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
19 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
20 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
21 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
22 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
23 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
24 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
25 2919395869 Microbacterium resistens 2980 Isolate Unclassified
26 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
27 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
28 2928153084 Leifsonia sp. 563 Isolate Unclassified
29 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
30 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
31 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
32 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
33 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
34 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
35 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
36 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
37 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
38 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
39 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
40 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
41 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
42 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
43 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
44 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
45 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
46 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
47 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
48 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
49 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
50 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
51 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
59 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
62 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
74 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
75 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
76 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
80 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
81 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
82 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
83 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
94 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
99 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
100 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
101 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
102 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
103 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
104 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
105 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.68
Metatranscriptomes 2.26
Isolates 27.07

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 28.57
Nodule 0
Rhizoplane 6.77
Rhizosphere 28.57
Stem 0
Stem Tuber 0.75
Unclassified 34.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10001963 3300002067 Bacteria 7228
2 JGI25164J39214_1001304 3300002772 Bacteria 6299
3 JGI25159J45721_1008054 3300002987 Bacteria 2938
4 JGI25165J46597_1000044 3300003214 Bacteria 263289
5 Ga0006562J51391_1040064 3300003578 Bacteria 14444
6 Ga0006562J51391_1040065 3300003578 Bacteria 11490
7 Ga0055539_1000027 3300003752 Bacteria 258020
8 Ga0055533_1000020 3300003756 Bacteria 353998
9 Ga0055525_1000151 3300003759 Bacteria 94158
10 Ga0055525_1000647 3300003759 Bacteria 13665
11 Ga0055527_1000005 3300003760 Bacteria 504776
12 Ga0055542_1000006 3300003762 Bacteria 504776
13 Ga0055529_1000400 3300003763 Bacteria 46269
14 Ga0075365_10004078 3300006038 Bacteria 7672
15 Ga0075363_100011505 3300006048 Bacteria 4239
16 Ga0075367_10000809 3300006178 Bacteria 12350
17 Ga0075369_10006488 3300006186 Bacteria 4426
18 Ga0105244_10006343 3300009036 Bacteria 7684
19 Ga0105250_10003756 3300009092 Bacteria 7136
20 Ga0206353_10351266 3300020082 Bacteria 4698
21 Ga0209566_100043 3300025225 Bacteria 266609
22 Ga0209674_100001 3300025226 Bacteria 4013750
23 Ga0209672_100003 3300025228 Bacteria 1560476
24 Ga0209147_100285 3300025229 Bacteria 42943
25 Ga0209563_100001 3300025230 Bacteria 4013775
26 Ga0209563_100222 3300025230 Bacteria 28212
27 Ga0207427_100077 3300025231 Bacteria 149591
28 Ga0209437_100530 3300025233 Bacteria 26486
29 Ga0209677_100001 3300025253 Bacteria 4013787
30 Ga0209677_100723 3300025253 Bacteria 16824
31 Ga0209148_1000004 3300025254 Bacteria 1844481
32 Ga0209233_1000014 3300025261 Bacteria 996641
33 Ga0209455_1000046 3300025272 Bacteria 382681
34 Ga0209455_1002660 3300025272 Bacteria 6732
35 Ga0209130_1003503 3300025284 Bacteria 6596
36 Ga0209025_1000826 3300025294 Bacteria 49373
37 Ga0209025_1016332 3300025294 Bacteria 4392
38 Ga0207696_1002474 3300025711 Bacteria 9031
39 Ga0207655_1000756 3300025728 Bacteria 36259
40 Ga0207713_1008635 3300025735 Bacteria 5835
41 Ga0307409_100032977 3300031995 Bacteria 3763
42 Ga0395899_0001686 3300037312 Bacteria 18415
43 Ga0395898_0000098 3300037466 Bacteria 229806
44 Ga0237819_01370 3300038705 Bacteria 6382
45 Ga0466961_0130318 3300044693 Bacteria 1576
46 Ga0466970_0006650 3300044765 Bacteria 5778
47 Ga0496100_0022777 3300048903 Bacteria 3794
48 Ga0496105_0093909 3300048908 Bacteria 2477
49 Ga0496105_0115795 3300048908 Bacteria 2211
50 Ga0496109_0023363 3300048912 Bacteria 5488
51 Ga0496109_0085951 3300048912 Bacteria 2904
52 Ga0496113_0183295 3300048916 Bacteria 1660
53 Ga0496114_0060644 3300048917 Bacteria 3162
54 Ga0496114_0083114 3300048917 Bacteria 2708
55 Ga0496114_0083225 3300048917 Bacteria 2707
56 Ga0496116_0019566 3300048919 Bacteria 5180
57 Ga0496117_0001427 3300048920 Bacteria 34547
58 Ga0496117_0001658 3300048920 Bacteria 31204
59 Ga0496117_0020382 3300048920 Bacteria 5405
60 Ga0496117_0052987 3300048920 Bacteria 2854
61 Ga0496118_0009293 3300048921 Bacteria 9967
62 Ga0496119_0001365 3300048922 Bacteria 29774
63 Ga0496120_0000622 3300048923 Bacteria 53364
64 Ga0496120_0078091 3300048923 Bacteria 1801
65 Ga0496122_0000020 3300048925 Bacteria 401675
66 Ga0496122_0000522 3300048925 Bacteria 79377
67 Ga0496122_0009941 3300048925 Bacteria 9909
68 Ga0496122_0039070 3300048925 Bacteria 3790
69 Ga0496123_0000003 3300048926 Bacteria 866556
70 Ga0496123_0000251 3300048926 Bacteria 108664
71 Ga0496124_0001543 3300048927 Bacteria 33363
72 Ga0496124_0009389 3300048927 Bacteria 10079
73 Ga0496125_0006622 3300048928 Bacteria 12469
74 Ga0496125_0008463 3300048928 Bacteria 10768
75 Ga0496125_0020095 3300048928 Bacteria 6280
76 Ga0496125_0025405 3300048928 Bacteria 5423
77 Ga0496126_0000565 3300048929 Bacteria 70942
78 Ga0496126_0014684 3300048929 Bacteria 7905
79 Ga0496126_0191390 3300048929 Bacteria 1732
80 Ga0496126_0215273 3300048929 Bacteria 1616
81 Ga0501034_0004491 3300049571 Bacteria 15509
82 Ga0501034_0020491 3300049571 Bacteria 6752
83 Ga0501038_0028420 3300049574 Bacteria 4969
84 Ga0501042_0005488 3300049578 Bacteria 8174
85 Ga0501070_0000050 3300049586 Bacteria 103310
86 Ga0501070_0004905 3300049586 Bacteria 11424
87 Ga0501073_0000012 3300049589 Bacteria 161319
88 Ga0501080_0055657 3300049742 Bacteria 3684
89 Ga0501083_0000123 3300049744 Bacteria 52722
90 nmdc:mga0yw44_11772_c1 3300050492 Bacteria 4534
91 nmdc:mga0yw44_6612_c1 3300050492 Bacteria 5619
92 nmdc:mga06z11_3910_c1 3300050494 Bacteria 5810
93 nmdc:mga0sz30_11416_c1 3300050516 Bacteria 3428
94 Ga0500635_0000004 3300053080 Bacteria 210675
95 Ga0495619_0044925 3300053085 Bacteria 2901
96 Ga0500593_002888 3300053117 Bacteria 6386
97 Ga0500655_003206 3300053133 Bacteria 2967

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048929 Ga0496126_0215273 Ga0496126_0215273_49_1515 460
2 3300048923 Ga0496120_0078091 Ga0496120_0078091_229_1791 481
3 3300048917 Ga0496114_0083225 Ga0496114_0083225_333_2012 483
4 3300044693 Ga0466961_0130318 Ga0466961_0130318_22_1509 489
5 3300048921 Ga0496118_0009293 Ga0496118_0009293_167_1870 517
6 3300053117 Ga0500593_002888 Ga0500593_002888_3114_4760 526
7 3300053133 Ga0500655_003206 Ga0500655_003206_201_1847 526
8 3300002987 JGI25159J45721_1008054 JGI25159J45721_10080542 527
9 3300009036 Ga0105244_10006343 Ga0105244_100063436 527
10 3300009092 Ga0105250_10003756 Ga0105250_100037566 527
11 3300025284 Ga0209130_1003503 Ga0209130_10035033 527
12 3300025294 Ga0209025_1000826 Ga0209025_10008269 527
13 3300025294 Ga0209025_1016332 Ga0209025_10163324 527
14 3300025711 Ga0207696_1002474 Ga0207696_10024744 527
15 3300025728 Ga0207655_1000756 Ga0207655_100075623 527
16 3300025735 Ga0207713_1008635 Ga0207713_10086353 527
17 3300038705 Ga0237819_01370 Ga0237819_01370_3667_5391 527
18 3300049586 Ga0501070_0004905 Ga0501070_0004905_6957_8606 531
19 3300048912 Ga0496109_0023363 Ga0496109_0023363_578_2206 532
20 3300048916 Ga0496113_0183295 Ga0496113_0183295_17_1645 532
21 3300031995 Ga0307409_100032977 Ga0307409_1000329774 533
22 3300048925 Ga0496122_0009941 Ga0496122_0009941_988_2658 533
23 3300048928 Ga0496125_0020095 Ga0496125_0020095_1393_3027 533
24 3300048928 Ga0496125_0025405 Ga0496125_0025405_1812_3482 533
25 3300049589 Ga0501073_0000012 Ga0501073_0000012_130093_131778 533
26 3300049742 Ga0501080_0055657 Ga0501080_0055657_1193_2878 533
27 3300048920 Ga0496117_0001427 Ga0496117_0001427_30462_32132 534
28 3300048928 Ga0496125_0008463 Ga0496125_0008463_452_2122 534
29 3300050492 nmdc:mga0yw44_11772_c1 nmdc:mga0yw44_11772_c1_2000_3688 534
30 iso_pu_bacteria 2906799679 2906801959 536
31 iso_pu_bacteria 2883821847 2883823288 538
32 3300053085 Ga0495619_0044925 Ga0495619_0044925_132_1796 539
33 iso_pu_bacteria 2643221546 2643753110 539
34 iso_pu_bacteria 2747842429 2747951636 541
35 iso_pu_bacteria 2857723135 2857725018 541
36 iso_pu_bacteria 2946041624 2946044825 541
37 iso_pu_bacteria 8004182704 8004185711 541
38 iso_pu_bacteria 2811994872 2812322360 542
39 iso_pu_bacteria 8004212874 8004213526 542
40 iso_pu_bacteria 2852646457 2852649526 543
41 3300049571 Ga0501034_0020491 Ga0501034_0020491_523_2187 544
42 3300049574 Ga0501038_0028420 Ga0501038_0028420_1989_3653 544
43 iso_pu_bacteria 2945968032 2945968375 544
44 3300049571 Ga0501034_0004491 Ga0501034_0004491_12118_13788 545
45 3300049578 Ga0501042_0005488 Ga0501042_0005488_6425_8113 545
46 3300049744 Ga0501083_0000123 Ga0501083_0000123_2481_4169 545
47 3300048917 Ga0496114_0060644 Ga0496114_0060644_420_2096 546
48 3300048919 Ga0496116_0019566 Ga0496116_0019566_942_2612 546
49 3300048923 Ga0496120_0000622 Ga0496120_0000622_37273_38943 546
50 3300048925 Ga0496122_0000020 Ga0496122_0000020_293169_294839 546
51 3300048926 Ga0496123_0000003 Ga0496123_0000003_508293_509963 546
52 3300048927 Ga0496124_0001543 Ga0496124_0001543_5366_7036 546
53 3300048928 Ga0496125_0006622 Ga0496125_0006622_7661_9331 546
54 iso_pu_bacteria 2919395869 2919396746 546
55 iso_pu_bacteria 2946080515 2946084550 546
56 3300048929 Ga0496126_0000565 Ga0496126_0000565_62172_63857 548
57 iso_pu_bacteria 2946033335 2946036925 548
58 3300044765 Ga0466970_0006650 Ga0466970_0006650_3065_4768 549
59 iso_pu_bacteria 2808606447 2809226756 549
60 iso_pu_bacteria 2852632344 2852632975 549
61 iso_pu_bacteria 2585428157 2588106821 550
62 iso_pu_bacteria 2643221575 2643888433 550
63 iso_pu_bacteria 2643221597 2643996548 550
64 iso_pu_bacteria 2643221572 2643874561 552
65 iso_pu_bacteria 2643221669 2644381617 552
66 3300006038 Ga0075365_10004078 Ga0075365_100040784 553
67 3300006048 Ga0075363_100011505 Ga0075363_1000115052 553
68 3300006178 Ga0075367_10000809 Ga0075367_100008093 553
69 3300006186 Ga0075369_10006488 Ga0075369_100064882 553
70 3300037466 Ga0395898_0000098 Ga0395898_0000098_31310_33025 553
71 3300050492 nmdc:mga0yw44_6612_c1 nmdc:mga0yw44_6612_c1_3528_5225 553
72 3300050494 nmdc:mga06z11_3910_c1 nmdc:mga06z11_3910_c1_587_2284 553
73 3300050516 nmdc:mga0sz30_11416_c1 nmdc:mga0sz30_11416_c1_1000_2697 553
74 3300048920 Ga0496117_0001658 Ga0496117_0001658_29366_31084 554
75 3300048922 Ga0496119_0001365 Ga0496119_0001365_19879_21597 554
76 3300048925 Ga0496122_0000522 Ga0496122_0000522_8436_10154 554
77 3300048926 Ga0496123_0000251 Ga0496123_0000251_105203_106921 554
78 3300048927 Ga0496124_0009389 Ga0496124_0009389_1731_3449 554
79 3300048929 Ga0496126_0014684 Ga0496126_0014684_1890_3608 554
80 iso_pu_bacteria 2643221649 2644277624 554
81 iso_pu_bacteria 2857720070 2857722270 555
82 iso_pu_bacteria 2928090899 2928091114 555
83 iso_pu_bacteria 2984580707 2984582126 555
84 3300048908 Ga0496105_0093909 Ga0496105_0093909_410_2137 556
85 3300048908 Ga0496105_0115795 Ga0496105_0115795_286_1992 556
86 3300048912 Ga0496109_0085951 Ga0496109_0085951_873_2600 556
87 3300053080 Ga0500635_0000004 Ga0500635_0000004_75522_77216 556
88 iso_pu_bacteria 2870628048 2870629649 556
89 iso_pu_bacteria 2895660088 2895663423 556
90 3300048929 Ga0496126_0191390 Ga0496126_0191390_27_1718 557
91 iso_pu_bacteria 2643221616 2644095005 557
92 iso_pu_bacteria 2884763398 2884764386 557
93 3300048925 Ga0496122_0039070 Ga0496122_0039070_2051_3763 558
94 iso_pu_bacteria 2585428094 2587863815 558
95 iso_pu_bacteria 2833709550 2833710185 558
96 3300003760 Ga0055527_1000005 Ga0055527_1000005477 560
97 3300003762 Ga0055542_1000006 Ga0055542_1000006477 560
98 3300003763 Ga0055529_1000400 Ga0055529_100040020 560
99 3300025228 Ga0209672_100003 Ga0209672_100003819 560
100 3300025229 Ga0209147_100285 Ga0209147_10028522 560
101 3300025254 Ga0209148_1000004 Ga0209148_10000041114 560
102 3300025272 Ga0209455_1000046 Ga0209455_1000046133 560
103 iso_pu_bacteria 8045830549 8045832817 560
104 3300002772 JGI25164J39214_1001304 JGI25164J39214_10013045 561
105 3300003214 JGI25165J46597_1000044 JGI25165J46597_1000044201 561
106 3300003752 Ga0055539_1000027 Ga0055539_1000027214 561
107 3300003756 Ga0055533_1000020 Ga0055533_1000020214 561
108 3300003759 Ga0055525_1000151 Ga0055525_100015182 561
109 3300003759 Ga0055525_1000647 Ga0055525_100064713 561
110 3300025225 Ga0209566_100043 Ga0209566_100043125 561
111 3300025226 Ga0209674_100001 Ga0209674_1000013685 561
112 3300025230 Ga0209563_100001 Ga0209563_1000013685 561
113 3300025230 Ga0209563_100222 Ga0209563_10022211 561
114 3300025231 Ga0207427_100077 Ga0207427_10007726 561
115 3300025233 Ga0209437_100530 Ga0209437_10053023 561
116 3300025253 Ga0209677_100001 Ga0209677_1000013685 561
117 3300025261 Ga0209233_1000014 Ga0209233_1000014200 561
118 3300048920 Ga0496117_0020382 Ga0496117_0020382_2528_4234 562
119 iso_pu_bacteria 2844841374 2844841486 562
120 3300025272 Ga0209455_1002660 Ga0209455_10026608 563
121 3300049586 Ga0501070_0000050 Ga0501070_0000050_32129_33838 563
122 iso_pu_bacteria 2919055335 2919057134 563
123 iso_pu_bacteria 2919523602 2919527188 563
124 iso_pu_bacteria 2928153084 2928154907 563
125 3300048903 Ga0496100_0022777 Ga0496100_0022777_277_1995 566
126 3300048917 Ga0496114_0083114 Ga0496114_0083114_972_2690 566
127 3300002067 JGI24735J21928_10001963 JGI24735J21928_100019631 567
128 3300003578 Ga0006562J51391_1040064 Ga0006562J51391_104006410 567
129 3300003578 Ga0006562J51391_1040065 Ga0006562J51391_10400655 567
130 3300020082 Ga0206353_10351266 Ga0206353_103512662 567
131 3300025253 Ga0209677_100723 Ga0209677_1007237 567
132 3300037312 Ga0395899_0001686 Ga0395899_0001686_16481_18202 567
133 3300048920 Ga0496117_0052987 Ga0496117_0052987_855_2576 567

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02878

PGM_PMM_I

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I

90

242

0.94

PF02879

PGM_PMM_II

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

263

372

0.93

PF02880

PGM_PMM_III

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

378

496

0.83

PF00408

PGM_PMM_IV

Phosphoglucomutase/phosphomannomutase, C-terminal domain

504

592

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fkm-assembly1.cif.gz_X pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound 0.8295 63 561
1p5g-assembly1.cif.gz_X enzyme-ligand complex of p. aeruginosa pmm/pgm 0.8237 63 561
3c04-assembly1.cif.gz_A structure of the p368g mutant of pmm/pgm from p. aeruginosa 0.8163 59 561
4il8-assembly1.cif.gz_A crystal structure of an h329a mutant of p. aeruginosa pmm/pgm 0.806 59 561
2fkm-assembly1.cif.gz_X pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound 0.8029 63 561
ID Description Score Start End Superfamily
af_O74478_35_192_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.9571 59 200 3.40.120.10
af_Q2FVC1_33_181_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.953 57 201 3.40.120.10
af_O53360_22_203_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.914 51 232 3.40.120.10
1tuoA01 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.8961 59 217 3.40.120.10
af_A1Z9V3_60_223_3.40.120.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3;Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.8922 55 200 3.40.120.10
ID Description Score Start End GO Terms
AF-A0A259S4P1-F1-model_v4 Phosphomannomutase 0.9904 12 230 GO:0000287
GO:0005975
GO:0006166
GO:0008973
AF-A0A4Y9H4Q8-F1-model_v4 deleted 0.9804 68 200
AF-A0A443J9N2-F1-model_v4 deleted 0.9789 13 173
AF-A0A3D6BP99-F1-model_v4 Phosphoglucomutase 0.9748 68 200 GO:0000287
GO:0005975
GO:0006166
GO:0008973
AF-U2SVB8-F1-model_v4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 0.9717 340 562 GO:0005975
GO:0006166
GO:0008973

Feature Viewer

pLDDT pTM Quality
87.56 0.87 High
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Predicted Structure (AlphaFold2)

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