F157959

General Info

Members Datasets Scaffolds Average Seq Length
133 90 133 325

Family's Representative Sequence

Representative Sequence 3300050515|nmdc:mga0a205_299861_c1|nmdc:mga0a205_299861_c1_236_1375
Length 379
Sequence VNPDIEEYGTVDGNRFLILTQIDQPRGRSTSASTCQRYCANDLPRALRTPCDRLKRVSKPLRWGLIGAGDIARKRVAAALRDAPGSELVAISRARPELAESFAAAFGARRWHSRWQDLIADRDVDAVYVATPVRVHAEQAIAAADAGKHVLCEKPMAMTVAECDRIIAACRANRVRLGVAYYRHFYPVITRIKQVVASGEIGDPTVVQIDAFEYFNPPPDHPRAWFVRKQEAGGGPMFDFGCHRLEVLLNLFGPLERVASLLTNAAFAREVEDTAVALLQFGRGACATVTVTHAACEPRDTLRIFGTRGSIHVDTLNGGAMRVTIGSDAREERHPPAANLHAPLVDDFVDAVTTGRDPAVGGDVGRTVAWLEEQIYAGA

Samples

Sample ID Description Type Environment
1 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
33 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
76 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
86 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
87 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
88 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
89 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
90 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.5
Nodule 0
Rhizoplane 0.75
Rhizosphere 97.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNAas_1000318 3300000532 Bacteria 4650
2 Ga0065715_10005278 3300005293 Bacteria 4150
3 Ga0065707_10000786 3300005295 Bacteria 15919
4 Ga0070680_100008647 3300005336 Bacteria 7804
5 Ga0070687_100033811 3300005343 Bacteria 2526
6 Ga0070687_100191468 3300005343 Bacteria 1233
7 Ga0070669_100025068 3300005353 Bacteria 4281
8 Ga0070675_100018821 3300005354 Bacteria 5498
9 Ga0070674_100084191 3300005356 Bacteria 2280
10 Ga0070674_100104179 3300005356 Bacteria 2073
11 Ga0070673_100005740 3300005364 Bacteria 7984
12 Ga0070673_100120127 3300005364 Unclassified 2191
13 Ga0070688_100078846 3300005365 Unclassified 2126
14 Ga0070659_100000787 3300005366 Bacteria 23097
15 Ga0070659_100214695 3300005366 Bacteria 1586
16 Ga0070667_100187340 3300005367 Bacteria 1832
17 Ga0070694_100005316 3300005444 Bacteria 7786
18 Ga0070708_100041434 3300005445 Bacteria 4037
19 Ga0070708_100208788 3300005445 Unclassified 1829
20 Ga0070707_100044117 3300005468 Bacteria 4268
21 Ga0070707_100044606 3300005468 Bacteria 4245
22 Ga0070707_100315287 3300005468 Bacteria 1520
23 Ga0070698_100000008 3300005471 Bacteria 119408
24 Ga0070699_100001415 3300005518 Bacteria 22040
25 Ga0070699_100146236 3300005518 Bacteria 2088
26 Ga0070699_100172361 3300005518 Unclassified 1918
27 Ga0070699_100200782 3300005518 Bacteria 1773
28 Ga0070697_100498934 3300005536 Bacteria 1064
29 Ga0070672_100209588 3300005543 Unclassified 1632
30 Ga0070686_100052309 3300005544 Bacteria 2604
31 Ga0070695_100004974 3300005545 Bacteria 7835
32 Ga0070696_100075049 3300005546 Bacteria 2385
33 Ga0070704_100099195 3300005549 Bacteria 2190
34 Ga0068857_100061689 3300005577 Bacteria 3331
35 Ga0068854_100369036 3300005578 Bacteria 1179
36 Ga0068859_100081720 3300005617 Unclassified 3273
37 Ga0068859_100192373 3300005617 Bacteria 2124
38 Ga0068859_100499871 3300005617 Bacteria 1311
39 Ga0068864_100044577 3300005618 Bacteria 3802
40 Ga0068864_100141944 3300005618 Unclassified 2167
41 Ga0068861_100565754 3300005719 Bacteria 1038
42 Ga0068860_100109633 3300005843 Bacteria 2638
43 Ga0081455_10058474 3300005937 Bacteria 3262
44 Ga0081539_10005411 3300005985 Bacteria 13057
45 Ga0075368_10016541 3300006042 Bacteria 2749
46 Ga0075366_10010153 3300006195 Bacteria 5281
47 Ga0075428_100018818 3300006844 Bacteria 7636
48 Ga0075428_100174924 3300006844 Bacteria 2325
49 Ga0075433_10034874 3300006852 Bacteria 4324
50 Ga0075434_100020847 3300006871 Bacteria 6364
51 Ga0097620_100081720 3300006931 Unclassified 3273
52 Ga0097620_100192371 3300006931 Bacteria 2124
53 Ga0097620_100499838 3300006931 Bacteria 1311
54 Ga0099794_10150114 3300007265 Bacteria 1183
55 Ga0111539_10002842 3300009094 Bacteria 23010
56 Ga0111539_10042784 3300009094 Bacteria 5436
57 Ga0114129_10007331 3300009147 Bacteria 15701
58 Ga0114129_10012186 3300009147 Bacteria 12232
59 Ga0114129_10060261 3300009147 Bacteria 5307
60 Ga0114129_10074634 3300009147 Bacteria 4724
61 Ga0114129_10299132 3300009147 Bacteria 2145
62 Ga0105241_10325206 3300009174 Bacteria 1327
63 Ga0105242_10010096 3300009176 Bacteria 7230
64 Ga0105248_10023574 3300009177 Bacteria 6837
65 Ga0105239_10153156 3300010375 Bacteria 2573
66 Ga0157373_10098724 3300013100 Bacteria 2055
67 Ga0157378_10029736 3300013297 Bacteria 4823
68 Ga0157378_10067706 3300013297 Bacteria 3201
69 Ga0157378_10151138 3300013297 Bacteria 2163
70 Ga0163162_10007931 3300013306 Bacteria 10352
71 Ga0163162_10074602 3300013306 Bacteria 3451
72 Ga0163162_10247737 3300013306 Bacteria 1913
73 Ga0157375_10077727 3300013308 Bacteria 3350
74 Ga0157375_10234871 3300013308 Bacteria 1993
75 Ga0163163_10093465 3300014325 Unclassified 3024
76 Ga0157380_10000715 3300014326 Bacteria 20715
77 Ga0157380_10114366 3300014326 Bacteria 2274
78 Ga0157380_10170756 3300014326 Bacteria 1900
79 Ga0157380_10532545 3300014326 Bacteria 1148
80 Ga0157379_10034038 3300014968 Bacteria 4541
81 Ga0163161_10011259 3300017792 Bacteria 6196
82 Ga0207685_10000017 3300025905 Bacteria 146902
83 Ga0207707_10013931 3300025912 Bacteria 7012
84 Ga0207646_10104591 3300025922 Bacteria 2539
85 Ga0207646_10163706 3300025922 Bacteria 2008
86 Ga0207646_10200010 3300025922 Bacteria 1805
87 Ga0207681_10170908 3300025923 Unclassified 1647
88 Ga0207644_10122924 3300025931 Bacteria 1978
89 Ga0207690_10069465 3300025932 Bacteria 2423
90 Ga0207686_10203295 3300025934 Bacteria 1420
91 Ga0207669_10004329 3300025937 Bacteria 6238
92 Ga0207711_10105031 3300025941 Bacteria 2504
93 Ga0207711_10125821 3300025941 Bacteria 2292
94 Ga0207679_10060101 3300025945 Unclassified 2822
95 Ga0207639_10056041 3300026041 Unclassified 3019
96 Ga0207641_10097768 3300026088 Unclassified 2581
97 Ga0207641_10179431 3300026088 Bacteria 1938
98 Ga0207674_10000683 3300026116 Bacteria 44086
99 Ga0207683_10364845 3300026121 Bacteria 1326
100 Ga0207428_10134876 3300027907 Bacteria 1888
101 Ga0268264_10043497 3300028381 Bacteria 3722
102 Ga0307409_100644687 3300031995 Bacteria 1052
103 Ga0307416_100024507 3300032002 Bacteria 4406
104 Ga0373931_0245998 3300035691 Bacteria 1086
105 Ga0395898_0058212 3300037466 Bacteria 3763
106 Ga0395901_0181134 3300038443 Bacteria 2210
107 Ga0453683_0261127 3300044673 Unclassified 1105
108 Ga0495664_0088319 3300046477 Bacteria 1863
109 Ga0496104_0031672 3300048907 Bacteria 4919
110 Ga0501033_0103869 3300049570 Bacteria 2072
111 Ga0501034_0016325 3300049571 Bacteria 7621
112 Ga0501037_0138247 3300049573 Bacteria 1744
113 Ga0501047_0002621 3300049581 Bacteria 17112
114 Ga0501070_0203269 3300049586 Bacteria 1627
115 Ga0501035_0000808 3300049822 Bacteria 33357
116 Ga0501044_0000948 3300049823 Bacteria 34820
117 Ga0501044_0014101 3300049823 Bacteria 8628
118 nmdc:mga05p37_130026_c1 3300050507 Bacteria 3090
119 nmdc:mga05p37_140590_c1 3300050507 Bacteria 2958
120 nmdc:mga05p37_14720_c1 3300050507 Bacteria 9397
121 nmdc:mga05p37_164861_c1 3300050507 Bacteria 2705
122 nmdc:mga05p37_249426_c1 3300050507 Bacteria 2130
123 nmdc:mga05p37_3890_c1 3300050507 Bacteria 17465
124 nmdc:mga08y16_2662_c1 3300050511 Bacteria 15344
125 nmdc:mga0n895_123831_c1 3300050512 Bacteria 2608
126 nmdc:mga0n895_216943_c1 3300050512 Bacteria 1943
127 nmdc:mga0n895_72475_c1 3300050512 Bacteria 3417
128 nmdc:mga0rr50_114832_c1 3300050513 Bacteria 2136
129 nmdc:mga0rr50_26982_c1 3300050513 Bacteria 4016
130 nmdc:mga0a205_100771_c1 3300050515 Bacteria 2787
131 nmdc:mga0a205_299861_c1 3300050515 Bacteria 1480
132 Ga0590075_007007 3300059424 Bacteria 2672
133 Ga0590077_007530 3300059426 Bacteria 2227

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050512 nmdc:mga0n895_216943_c1 nmdc:mga0n895_216943_c1_373_1299 304
2 3300014326 Ga0157380_10114366 Ga0157380_101143662 307
3 3300013306 Ga0163162_10247737 Ga0163162_102477372 309
4 3300005544 Ga0070686_100052309 Ga0070686_1000523092 314
5 3300005343 Ga0070687_100191468 Ga0070687_1001914681 315
6 3300005617 Ga0068859_100192373 Ga0068859_1001923732 315
7 3300006844 Ga0075428_100174924 Ga0075428_1001749242 315
8 3300006931 Ga0097620_100192371 Ga0097620_1001923712 315
9 3300009147 Ga0114129_10299132 Ga0114129_102991322 315
10 3300025931 Ga0207644_10122924 Ga0207644_101229242 315
11 3300025934 Ga0207686_10203295 Ga0207686_102032951 315
12 3300025941 Ga0207711_10105031 Ga0207711_101050312 315
13 3300037466 Ga0395898_0058212 Ga0395898_0058212_1023_1973 315
14 3300038443 Ga0395901_0181134 Ga0395901_0181134_1122_2072 315
15 3300050507 nmdc:mga05p37_14720_c1 nmdc:mga05p37_14720_c1_4111_5070 315
16 3300005353 Ga0070669_100025068 Ga0070669_1000250684 319
17 3300005364 Ga0070673_100120127 Ga0070673_1001201272 319
18 3300005518 Ga0070699_100200782 Ga0070699_1002007821 319
19 3300005843 Ga0068860_100109633 Ga0068860_1001096332 319
20 3300005937 Ga0081455_10058474 Ga0081455_100584742 319
21 3300025923 Ga0207681_10170908 Ga0207681_101709082 319
22 3300028381 Ga0268264_10043497 Ga0268264_100434972 319
23 3300048907 Ga0496104_0031672 Ga0496104_0031672_3862_4821 319
24 3300005356 Ga0070674_100104179 Ga0070674_1001041792 320
25 3300005364 Ga0070673_100005740 Ga0070673_1000057405 320
26 3300005445 Ga0070708_100041434 Ga0070708_1000414344 320
27 3300005468 Ga0070707_100315287 Ga0070707_1003152871 320
28 3300005518 Ga0070699_100172361 Ga0070699_1001723612 320
29 3300006042 Ga0075368_10016541 Ga0075368_100165413 320
30 3300006195 Ga0075366_10010153 Ga0075366_100101535 320
31 3300009174 Ga0105241_10325206 Ga0105241_103252061 320
32 3300009177 Ga0105248_10023574 Ga0105248_100235746 320
33 3300013306 Ga0163162_10007931 Ga0163162_100079316 320
34 3300014326 Ga0157380_10532545 Ga0157380_105325451 320
35 3300025922 Ga0207646_10163706 Ga0207646_101637062 320
36 3300025941 Ga0207711_10125821 Ga0207711_101258212 320
37 3300026121 Ga0207683_10364845 Ga0207683_103648451 320
38 3300031995 Ga0307409_100644687 Ga0307409_1006446871 320
39 3300032002 Ga0307416_100024507 Ga0307416_1000245074 320
40 3300049570 Ga0501033_0103869 Ga0501033_0103869_812_1822 320
41 3300049571 Ga0501034_0016325 Ga0501034_0016325_5771_6781 320
42 3300049573 Ga0501037_0138247 Ga0501037_0138247_665_1675 320
43 3300049581 Ga0501047_0002621 Ga0501047_0002621_1744_2706 320
44 3300049586 Ga0501070_0203269 Ga0501070_0203269_487_1449 320
45 3300049822 Ga0501035_0000808 Ga0501035_0000808_21040_22002 320
46 3300049823 Ga0501044_0000948 Ga0501044_0000948_21106_22068 320
47 3300049823 Ga0501044_0014101 Ga0501044_0014101_3562_4572 320
48 3300059424 Ga0590075_007007 Ga0590075_007007_63_1043 320
49 3300059426 Ga0590077_007530 Ga0590077_007530_183_1163 320
50 3300005343 Ga0070687_100033811 Ga0070687_1000338112 321
51 3300005471 Ga0070698_100000008 Ga0070698_10000000899 321
52 3300005518 Ga0070699_100146236 Ga0070699_1001462362 321
53 3300005546 Ga0070696_100075049 Ga0070696_1000750491 321
54 3300006852 Ga0075433_10034874 Ga0075433_100348743 321
55 3300006871 Ga0075434_100020847 Ga0075434_1000208472 321
56 3300007265 Ga0099794_10150114 Ga0099794_101501141 321
57 3300009176 Ga0105242_10010096 Ga0105242_100100965 321
58 3300013297 Ga0157378_10029736 Ga0157378_100297363 321
59 3300013297 Ga0157378_10151138 Ga0157378_101511382 321
60 3300014326 Ga0157380_10000715 Ga0157380_100007159 321
61 3300050512 nmdc:mga0n895_72475_c1 nmdc:mga0n895_72475_c1_1408_2373 321
62 3300050515 nmdc:mga0a205_100771_c1 nmdc:mga0a205_100771_c1_130_1095 321
63 3300000532 CNAas_1000318 CNAas_10003182 322
64 3300005293 Ga0065715_10005278 Ga0065715_100052783 322
65 3300005295 Ga0065707_10000786 Ga0065707_100007863 322
66 3300005336 Ga0070680_100008647 Ga0070680_1000086473 322
67 3300005354 Ga0070675_100018821 Ga0070675_1000188214 322
68 3300005356 Ga0070674_100084191 Ga0070674_1000841913 322
69 3300005365 Ga0070688_100078846 Ga0070688_1000788463 322
70 3300005366 Ga0070659_100000787 Ga0070659_1000007871 322
71 3300005366 Ga0070659_100214695 Ga0070659_1002146952 322
72 3300005367 Ga0070667_100187340 Ga0070667_1001873402 322
73 3300005444 Ga0070694_100005316 Ga0070694_1000053163 322
74 3300005445 Ga0070708_100208788 Ga0070708_1002087881 322
75 3300005468 Ga0070707_100044117 Ga0070707_1000441172 322
76 3300005468 Ga0070707_100044606 Ga0070707_1000446062 322
77 3300005518 Ga0070699_100001415 Ga0070699_10000141512 322
78 3300005536 Ga0070697_100498934 Ga0070697_1004989341 322
79 3300005543 Ga0070672_100209588 Ga0070672_1002095881 322
80 3300005545 Ga0070695_100004974 Ga0070695_1000049746 322
81 3300005549 Ga0070704_100099195 Ga0070704_1000991952 322
82 3300005577 Ga0068857_100061689 Ga0068857_1000616892 322
83 3300005578 Ga0068854_100369036 Ga0068854_1003690361 322
84 3300005617 Ga0068859_100081720 Ga0068859_1000817202 322
85 3300005617 Ga0068859_100499871 Ga0068859_1004998711 322
86 3300005618 Ga0068864_100044577 Ga0068864_1000445773 322
87 3300005618 Ga0068864_100141944 Ga0068864_1001419442 322
88 3300005719 Ga0068861_100565754 Ga0068861_1005657541 322
89 3300005985 Ga0081539_10005411 Ga0081539_100054115 322
90 3300006844 Ga0075428_100018818 Ga0075428_1000188184 322
91 3300006931 Ga0097620_100081720 Ga0097620_1000817202 322
92 3300006931 Ga0097620_100499838 Ga0097620_1004998381 322
93 3300009094 Ga0111539_10002842 Ga0111539_100028427 322
94 3300009094 Ga0111539_10042784 Ga0111539_100427843 322
95 3300009147 Ga0114129_10007331 Ga0114129_1000733112 322
96 3300009147 Ga0114129_10012186 Ga0114129_100121868 322
97 3300009147 Ga0114129_10060261 Ga0114129_100602613 322
98 3300009147 Ga0114129_10074634 Ga0114129_100746342 322
99 3300010375 Ga0105239_10153156 Ga0105239_101531562 322
100 3300013100 Ga0157373_10098724 Ga0157373_100987242 322
101 3300013297 Ga0157378_10067706 Ga0157378_100677062 322
102 3300013306 Ga0163162_10074602 Ga0163162_100746022 322
103 3300013308 Ga0157375_10077727 Ga0157375_100777272 322
104 3300013308 Ga0157375_10234871 Ga0157375_102348713 322
105 3300014325 Ga0163163_10093465 Ga0163163_100934651 322
106 3300014326 Ga0157380_10170756 Ga0157380_101707563 322
107 3300014968 Ga0157379_10034038 Ga0157379_100340382 322
108 3300017792 Ga0163161_10011259 Ga0163161_100112592 322
109 3300025905 Ga0207685_10000017 Ga0207685_1000001778 322
110 3300025912 Ga0207707_10013931 Ga0207707_100139313 322
111 3300025922 Ga0207646_10104591 Ga0207646_101045912 322
112 3300025922 Ga0207646_10200010 Ga0207646_102000102 322
113 3300025932 Ga0207690_10069465 Ga0207690_100694652 322
114 3300025937 Ga0207669_10004329 Ga0207669_100043294 322
115 3300025945 Ga0207679_10060101 Ga0207679_100601012 322
116 3300026041 Ga0207639_10056041 Ga0207639_100560412 322
117 3300026088 Ga0207641_10097768 Ga0207641_100977682 322
118 3300026088 Ga0207641_10179431 Ga0207641_101794311 322
119 3300026116 Ga0207674_10000683 Ga0207674_1000068335 322
120 3300027907 Ga0207428_10134876 Ga0207428_101348762 322
121 3300035691 Ga0373931_0245998 Ga0373931_0245998_94_1074 322
122 3300044673 Ga0453683_0261127 Ga0453683_0261127_11_985 322
123 3300046477 Ga0495664_0088319 Ga0495664_0088319_804_1787 322
124 3300050507 nmdc:mga05p37_130026_c1 nmdc:mga05p37_130026_c1_536_1519 322
125 3300050507 nmdc:mga05p37_140590_c1 nmdc:mga05p37_140590_c1_460_1443 322
126 3300050507 nmdc:mga05p37_164861_c1 nmdc:mga05p37_164861_c1_581_1576 322
127 3300050507 nmdc:mga05p37_249426_c1 nmdc:mga05p37_249426_c1_1023_2036 322
128 3300050507 nmdc:mga05p37_3890_c1 nmdc:mga05p37_3890_c1_7927_8907 322
129 3300050511 nmdc:mga08y16_2662_c1 nmdc:mga08y16_2662_c1_10436_11419 322
130 3300050512 nmdc:mga0n895_123831_c1 nmdc:mga0n895_123831_c1_1308_2279 322
131 3300050513 nmdc:mga0rr50_114832_c1 nmdc:mga0rr50_114832_c1_267_1238 322
132 3300050513 nmdc:mga0rr50_26982_c1 nmdc:mga0rr50_26982_c1_1800_2783 322
133 3300050515 nmdc:mga0a205_299861_c1 nmdc:mga0a205_299861_c1_236_1375 322

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

61

181

0.96

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

189

312

0.95

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

67

180

0.92

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

193

375

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
1h6d-assembly3.cif.gz_I oxidized precursor form of glucose-fructose oxidoreductase from zymomonas mobilis complexed with glycerol 0.9278 2 322
2glx-assembly1.cif.gz_A crystal structure analysis of bacterial 1,5-af reductase 0.9261 5 322
1h6d-assembly3.cif.gz_I oxidized precursor form of glucose-fructose oxidoreductase from zymomonas mobilis complexed with glycerol 0.9223 2 322
1rye-assembly1.cif.gz_D crystal structure of the shifted form of the glucose-fructose oxidoreductase from zymomonas mobilis 0.9205 1 322
6a3i-assembly1.cif.gz_A levoglucosan dehydrogenase, complex with nadh and levoglucosan 0.9205 2 322
ID Description Score Start End Superfamily
2glxE01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9639 5 122 3.40.50.720
af_D4A903_1_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9577 3 120 3.40.50.720
4hadB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9563 3 120 3.40.50.720
af_M9PE54_6_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9517 3 120 3.40.50.720
3rbvA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9516 2 122 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A496RCF7-F1-model_v4 GFO/IDH/MocA-like oxidoreductase domain-containing protein 0.992 182 320
AF-A0A496RCF7-F1-model_v4 GFO/IDH/MocA-like oxidoreductase domain-containing protein 0.9712 182 320
AF-A0A660YPU1-F1-model_v4 GFO/IDH/MocA-like oxidoreductase domain-containing protein 0.9693 180 322
AF-A0A351MHT5-F1-model_v4 Dehydrogenase 0.9646 1 131 GO:0000166
GO:0016491
AF-A0A7V2HDY1-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9617 1 322 GO:0000166
GO:0016491

Feature Viewer

pLDDT pTM Quality
96.53 0.92 High
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Predicted Structure (AlphaFold2)

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