F154544

General Info

Members Datasets Scaffolds Average Seq Length
132 102 91 454

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919051321|2919053785
Length 497
Sequence DTAPTPALVWFRDDLRVRDNPALRAALAHGPTVALYVLDEESPGIRPLGGAARWWLHHALEDLRGSLGRLGVPLVLRRGTAAAVVPNVAAQARAGYVAWNRRYGGPERRADTAVKSILRRAGREAESFQASLLHEPWDVLTQQGTGYKVFTPFWKELSGRDHRHPLPIPRPQREAPEHVPAGDGLDAWALLPRDPDWSGPLAEAWTPGEEAGLALLKDFVGPDTADTAVALYPDERDLPDRPGTSRLSPYLRWGHVSPFQVWHAVADRRRAAPEGSAVFASELGWREFAWHTLYHHADLASENLRREFDAYPWWLPHAGKGGAHDAGRGRAHGGPPAVVLGDREANRLLDAWRRGRTGFPMVDAGQRELWATGWMHNRVRMVSASLLVKNLGIHWRLGERWFWDTLVDADPASNPFNWQWVAGSGADAAPFFRIFNPRTQQKKFDPHGAYARAWIPELGTDEYPAECVDLGESRAEALEAYRSLSEAQGRGQGRRRA

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221553 Microbacterium sp. Root553 Isolate Unclassified
4 2643221597 Microbacterium sp. Root180 Isolate Unclassified
5 2643221630 Microbacterium sp. Root322 Isolate Unclassified
6 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
7 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
8 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
9 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
10 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
11 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
12 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
13 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
14 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
15 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
16 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
17 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
18 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
19 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
20 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
21 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
22 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
23 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
24 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
25 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
26 2919069694 Microbacterium sp. 1154 Isolate Unclassified
27 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
28 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
29 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
30 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
31 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
32 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
33 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
34 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
35 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
36 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
37 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
54 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
73 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
74 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
75 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
76 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
77 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
80 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
81 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
82 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
83 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
84 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
85 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
92 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
96 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
97 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
98 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
99 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
100 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
101 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
102 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 67.42
Metatranscriptomes 1.52
Isolates 31.06

Biome Distribution

Category Percentage (%)
Aerial Root 0.76
Bulb 0
Endosphere 4.55
Nodule 0
Rhizoplane 0.76
Rhizosphere 54.55
Stem 0
Stem Tuber 0
Unclassified 39.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1000531 3300002772 Bacteria 18002
2 Ga0006562J51391_1100831 3300003578 Bacteria 12242
3 Ga0006562J51391_1100832 3300003578 Bacteria 12140
4 Ga0068855_100013050 3300005563 Bacteria 10023
5 Ga0068857_100009990 3300005577 Bacteria 8237
6 Ga0068852_100013547 3300005616 Bacteria 6242
7 Ga0068852_100014935 3300005616 Bacteria 6002
8 Ga0068851_10000033 3300005834 Bacteria 108511
9 Ga0075365_10063678 3300006038 Bacteria 2469
10 Ga0075364_10028853 3300006051 Bacteria 3554
11 Ga0105240_10002304 3300009093 Bacteria 30872
12 Ga0105243_10005323 3300009148 Bacteria 10054
13 Ga0105241_10005079 3300009174 Bacteria 9707
14 Ga0105248_10101175 3300009177 Bacteria 3248
15 Ga0105237_10053013 3300009545 Bacteria 4070
16 Ga0105238_10121046 3300009551 Bacteria 2597
17 Ga0157369_10010340 3300013105 Bacteria 10641
18 Ga0171462_1002 3300013250 Bacteria 1052134
19 Ga0157375_10402630 3300013308 Bacteria 1535
20 Ga0209646_1000099 3300025246 Bacteria 180436
21 Ga0209148_1001169 3300025254 Bacteria 15231
22 Ga0207656_10000001 3300025321 Bacteria 1323684
23 Ga0207655_1002105 3300025728 Bacteria 16665
24 Ga0207654_10000001 3300025911 Bacteria 1816198
25 Ga0207695_10042327 3300025913 Bacteria 4866
26 Ga0207671_10000001 3300025914 Bacteria 1318881
27 Ga0207694_10000019 3300025924 Bacteria 312382
28 Ga0207709_10005442 3300025935 Bacteria 7235
29 Ga0207667_10012434 3300025949 Bacteria 9810
30 Ga0207674_10003932 3300026116 Bacteria 18085
31 Ga0207698_10001278 3300026142 Bacteria 14680
32 Ga0207698_10002021 3300026142 Bacteria 11972
33 Ga0307406_10001290 3300031901 Bacteria 14052
34 Ga0307406_10001866 3300031901 Bacteria 11503
35 Ga0307406_10012500 3300031901 Bacteria 4839
36 Ga0307412_10058881 3300031911 Bacteria 2572
37 Ga0395899_0010105 3300037312 Bacteria 7235
38 Ga0395899_0013332 3300037312 Bacteria 6287
39 Ga0395899_0019504 3300037312 Bacteria 5150
40 Ga0395900_0002216 3300037418 Bacteria 21707
41 Ga0395900_0046958 3300037418 Bacteria 4446
42 Ga0395898_0001754 3300037466 Bacteria 28472
43 Ga0395898_0004998 3300037466 Bacteria 14384
44 Ga0395898_0007934 3300037466 Bacteria 11261
45 Ga0395898_0091070 3300037466 Bacteria 2934
46 Ga0395898_0117556 3300037466 Bacteria 2547
47 Ga0395905_0044747 3300037471 Bacteria 4153
48 Ga0395901_0001124 3300038443 Bacteria 28426
49 Ga0466972_0041894 3300044658 Bacteria 2228
50 Ga0495627_000473 3300046453 Bacteria 34381
51 Ga0495580_0003192 3300046472 Bacteria 14039
52 Ga0495645_0011095 3300046543 Bacteria 6336
53 Ga0496102_0109149 3300048905 Bacteria 2578
54 Ga0496116_0016299 3300048919 Bacteria 5819
55 Ga0496117_0000091 3300048920 Bacteria 203826
56 Ga0496117_0004701 3300048920 Bacteria 14836
57 Ga0496117_0028479 3300048920 Bacteria 4325
58 Ga0496118_0005501 3300048921 Bacteria 14377
59 Ga0496118_0019692 3300048921 Bacteria 6021
60 Ga0496118_0048527 3300048921 Bacteria 3278
61 Ga0496119_0001804 3300048922 Bacteria 24887
62 Ga0496119_0002638 3300048922 Bacteria 19429
63 Ga0496119_0010061 3300048922 Bacteria 7998
64 Ga0496119_0010322 3300048922 Bacteria 7870
65 Ga0496120_0001858 3300048923 Bacteria 23505
66 Ga0496120_0004089 3300048923 Bacteria 12608
67 Ga0496120_0016700 3300048923 Bacteria 4788
68 Ga0496120_0020397 3300048923 Bacteria 4213
69 Ga0496122_0000208 3300048925 Bacteria 131175
70 Ga0496122_0041816 3300048925 Bacteria 3616
71 Ga0496123_0000003 3300048926 Bacteria 866556
72 Ga0496124_0027546 3300048927 Bacteria 5099
73 Ga0496124_0106611 3300048927 Bacteria 2262
74 Ga0496125_0007686 3300048928 Bacteria 11425
75 Ga0496125_0046729 3300048928 Bacteria 3628
76 Ga0496125_0111083 3300048928 Bacteria 1985
77 Ga0496125_0121105 3300048928 Bacteria 1866
78 Ga0496126_0018208 3300048929 Bacteria 6970
79 Ga0496126_0023545 3300048929 Bacteria 5967
80 Ga0496126_0167124 3300048929 Bacteria 1877
81 Ga0501034_0069193 3300049571 Bacteria 3540
82 Ga0501036_0024298 3300049572 Bacteria 5108
83 Ga0501038_0037020 3300049574 Bacteria 4281
84 Ga0501038_0087795 3300049574 Bacteria 2611
85 Ga0501047_0021533 3300049581 Bacteria 6191
86 Ga0501070_0000133 3300049586 Bacteria 67036
87 Ga0501074_0024662 3300049590 Bacteria 4369
88 Ga0501035_0061232 3300049822 Bacteria 3350
89 Ga0501044_0101562 3300049823 Bacteria 2893
90 nmdc:mga0yw44_38184_c1 3300050492 Bacteria 2840
91 Ga0500635_0000023 3300053080 Bacteria 108024

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0109149 Ga0496102_0109149_23_1150 360
2 3300003578 Ga0006562J51391_1100831 Ga0006562J51391_11008315 422
3 3300003578 Ga0006562J51391_1100832 Ga0006562J51391_11008327 422
4 3300009093 Ga0105240_10002304 Ga0105240_1000230436 429
5 3300009174 Ga0105241_10005079 Ga0105241_100050799 429
6 3300025911 Ga0207654_10000001 Ga0207654_10000001632 429
7 3300025913 Ga0207695_10042327 Ga0207695_100423272 429
8 3300031901 Ga0307406_10001290 Ga0307406_1000129010 430
9 3300013308 Ga0157375_10402630 Ga0157375_104026301 432
10 3300037466 Ga0395898_0007934 Ga0395898_0007934_1664_3094 434
11 iso_pu_bacteria 2784132109 2784473640 436
12 iso_pu_bacteria 8055037949 8055039962 437
13 iso_pu_bacteria 2643221542 2643733641 439
14 iso_pu_bacteria 2643221553 2643785808 439
15 iso_pu_bacteria 2643221630 2644170215 439
16 iso_pu_bacteria 2643221724 2644680214 439
17 iso_pu_bacteria 2728369380 2730229664 439
18 iso_pu_bacteria 2747842429 2747951998 439
19 iso_pu_bacteria 2808606306 2808629063 439
20 iso_pu_bacteria 2852663356 2852665282 439
21 iso_pu_bacteria 2946041624 2946042018 439
22 iso_pu_bacteria 2946080515 2946080924 439
23 iso_pu_bacteria 8004182704 8004185143 439
24 iso_pu_bacteria 2848551377 2848554201 440
25 iso_pu_bacteria 2585428157 2588107194 441
26 iso_pu_bacteria 8002811521 8002813273 441
27 iso_pu_bacteria 8004212874 8004215505 441
28 3300006051 Ga0075364_10028853 Ga0075364_100288533 443
29 3300025246 Ga0209646_1000099 Ga0209646_10000994 443
30 3300031901 Ga0307406_10001866 Ga0307406_100018669 443
31 3300031901 Ga0307406_10012500 Ga0307406_100125004 443
32 3300031911 Ga0307412_10058881 Ga0307412_100588813 443
33 3300046453 Ga0495627_000473 Ga0495627_000473_29319_30671 443
34 3300048920 Ga0496117_0004701 Ga0496117_0004701_2663_4015 443
35 3300048928 Ga0496125_0121105 Ga0496125_0121105_27_1379 443
36 3300048929 Ga0496126_0018208 Ga0496126_0018208_1178_2530 443
37 3300049574 Ga0501038_0037020 Ga0501038_0037020_1858_3195 443
38 iso_pu_bacteria 2643221597 2643996961 443
39 iso_pu_bacteria 2773857763 2774397955 443
40 iso_pu_bacteria 2833709550 2833712520 443
41 iso_pu_bacteria 2852677369 2852679644 443
42 iso_pu_bacteria 8045830549 8045833747 443
43 iso_pu_bacteria 2811994872 2812324749 444
44 iso_pu_bacteria 8004025490 8004027704 444
45 3300048919 Ga0496116_0016299 Ga0496116_0016299_3925_5271 445
46 3300048921 Ga0496118_0005501 Ga0496118_0005501_10626_11972 445
47 3300048922 Ga0496119_0010322 Ga0496119_0010322_1201_2547 445
48 3300048923 Ga0496120_0004089 Ga0496120_0004089_1347_2693 445
49 3300048925 Ga0496122_0000208 Ga0496122_0000208_87687_89033 445
50 3300048926 Ga0496123_0000003 Ga0496123_0000003_85321_86667 445
51 3300048927 Ga0496124_0027546 Ga0496124_0027546_3681_5027 445
52 3300048928 Ga0496125_0046729 Ga0496125_0046729_1745_3091 445
53 3300025935 Ga0207709_10005442 Ga0207709_100054426 446
54 3300049571 Ga0501034_0069193 Ga0501034_0069193_1240_2676 446
55 3300049572 Ga0501036_0024298 Ga0501036_0024298_2380_3816 446
56 3300049574 Ga0501038_0087795 Ga0501038_0087795_153_1589 446
57 3300049581 Ga0501047_0021533 Ga0501047_0021533_282_1718 446
58 3300049590 Ga0501074_0024662 Ga0501074_0024662_713_2149 446
59 3300049823 Ga0501044_0101562 Ga0501044_0101562_1245_2681 446
60 iso_pu_bacteria 2870628048 2870629296 446
61 3300013250 Ga0171462_1002 Ga0171462_1002654 447
62 3300048922 Ga0496119_0002638 Ga0496119_0002638_4729_6084 447
63 3300048928 Ga0496125_0111083 Ga0496125_0111083_90_1460 447
64 3300048929 Ga0496126_0167124 Ga0496126_0167124_158_1528 447
65 3300006038 Ga0075365_10063678 Ga0075365_100636782 448
66 3300037312 Ga0395899_0013332 Ga0395899_0013332_4385_5773 448
67 3300037466 Ga0395898_0004998 Ga0395898_0004998_6641_8029 448
68 3300037471 Ga0395905_0044747 Ga0395905_0044747_125_1513 448
69 3300046472 Ga0495580_0003192 Ga0495580_0003192_10816_12195 448
70 3300046543 Ga0495645_0011095 Ga0495645_0011095_3615_4994 448
71 3300050492 nmdc:mga0yw44_38184_c1 nmdc:mga0yw44_38184_c1_948_2297 448
72 3300005563 Ga0068855_100013050 Ga0068855_1000130503 449
73 3300005577 Ga0068857_100009990 Ga0068857_1000099907 449
74 3300005616 Ga0068852_100013547 Ga0068852_1000135475 449
75 3300005616 Ga0068852_100014935 Ga0068852_1000149354 449
76 3300005834 Ga0068851_10000033 Ga0068851_10000033107 449
77 3300009177 Ga0105248_10101175 Ga0105248_101011752 449
78 3300009545 Ga0105237_10053013 Ga0105237_100530134 449
79 3300009551 Ga0105238_10121046 Ga0105238_101210462 449
80 3300025254 Ga0209148_1001169 Ga0209148_10011693 449
81 3300025321 Ga0207656_10000001 Ga0207656_100000011317 449
82 3300025914 Ga0207671_10000001 Ga0207671_100000011316 449
83 3300025924 Ga0207694_10000019 Ga0207694_10000019246 449
84 3300025949 Ga0207667_10012434 Ga0207667_100124343 449
85 3300026116 Ga0207674_10003932 Ga0207674_1000393217 449
86 3300026142 Ga0207698_10001278 Ga0207698_100012787 449
87 3300026142 Ga0207698_10002021 Ga0207698_100020216 449
88 3300048920 Ga0496117_0028479 Ga0496117_0028479_1815_3173 449
89 3300048921 Ga0496118_0048527 Ga0496118_0048527_171_1529 449
90 3300048922 Ga0496119_0010061 Ga0496119_0010061_3351_4709 449
91 3300048923 Ga0496120_0016700 Ga0496120_0016700_640_1998 449
92 3300048923 Ga0496120_0020397 Ga0496120_0020397_2448_3806 449
93 iso_pu_bacteria 2721755702 2723640674 449
94 iso_pu_bacteria 2757320536 2758225819 449
95 iso_pu_bacteria 2773857758 2774379875 449
96 iso_pu_bacteria 2821268502 2821271310 449
97 iso_pu_bacteria 2904509784 2904513025 449
98 iso_pu_bacteria 2908678064 2908679104 449
99 iso_pu_bacteria 2919069694 2919069735 449
100 iso_pu_bacteria 2935409751 2935410167 449
101 iso_pu_bacteria 2974294766 2974296045 449
102 iso_pu_bacteria 2974324384 2974327691 449
103 iso_pu_bacteria 2977228692 2977229312 449
104 iso_pu_bacteria 2977236895 2977238650 449
105 iso_pu_bacteria 2977264416 2977264481 449
106 iso_pu_bacteria 2984542743 2984543568 449
107 3300037312 Ga0395899_0010105 Ga0395899_0010105_1976_3406 450
108 3300037466 Ga0395898_0091070 Ga0395898_0091070_108_1538 450
109 3300038443 Ga0395901_0001124 Ga0395901_0001124_1736_3166 450
110 3300044658 Ga0466972_0041894 Ga0466972_0041894_181_1611 450
111 3300025728 Ga0207655_1002105 Ga0207655_100210511 452
112 3300048921 Ga0496118_0019692 Ga0496118_0019692_1247_2656 452
113 iso_pu_bacteria 2919051321 2919053785 452
114 3300048920 Ga0496117_0000091 Ga0496117_0000091_139741_141111 453
115 3300048922 Ga0496119_0001804 Ga0496119_0001804_13737_15107 453
116 3300048923 Ga0496120_0001858 Ga0496120_0001858_8269_9639 453
117 3300048925 Ga0496122_0041816 Ga0496122_0041816_2114_3484 453
118 3300048927 Ga0496124_0106611 Ga0496124_0106611_468_1838 453
119 3300048928 Ga0496125_0007686 Ga0496125_0007686_5065_6435 453
120 3300048929 Ga0496126_0023545 Ga0496126_0023545_2504_3874 453
121 iso_pu_bacteria 2895660088 2895662400 453
122 3300009148 Ga0105243_10005323 Ga0105243_100053235 454
123 3300037312 Ga0395899_0019504 Ga0395899_0019504_424_1929 456
124 3300037418 Ga0395900_0002216 Ga0395900_0002216_1907_3295 456
125 3300037418 Ga0395900_0046958 Ga0395900_0046958_875_2380 456
126 3300037466 Ga0395898_0001754 Ga0395898_0001754_25150_26538 456
127 3300037466 Ga0395898_0117556 Ga0395898_0117556_914_2419 456
128 3300053080 Ga0500635_0000023 Ga0500635_0000023_39796_41172 456
129 3300002772 JGI25164J39214_1000531 JGI25164J39214_10005313 462
130 3300013105 Ga0157369_10010340 Ga0157369_100103405 462
131 3300049586 Ga0501070_0000133 Ga0501070_0000133_38899_40305 462
132 3300049822 Ga0501035_0061232 Ga0501035_0061232_43_1449 462

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00875

DNA_photolyase

DNA photolyase

7

172

0.94

PF03441

FAD_binding_7

FAD binding domain of DNA photolyase

279

461

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.9562 10 462
6lz7-assembly1.cif.gz_A tetrameric structure of zmcry1a phr domain 0.9367 10 459
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.9359 10 462
6k8k-assembly1.cif.gz_A crystal structure of arabidopsis thaliana bic2-cry2 complex 0.9316 12 461
1owo-assembly1.cif.gz_A data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 0.9274 11 461
ID Description Score Start End Superfamily
af_P05066_403_565_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9587 305 459 1.10.579.10
1u3dA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9473 14 137 3.40.50.620
af_Q2G0A6_275_457_1.10.579.10 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.946 302 459 1.10.579.10
1dnpB03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.943 300 460 1.10.579.10
4u63A03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9395 300 462 1.10.579.10
ID Description Score Start End GO Terms
AF-A0A1H4EZ79-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9916 10 461 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A519JM51-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.9825 315 457 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0071949
AF-A0A1Y3LR70-F1-model_v4 deleted 0.9801 12 462
AF-A0A7J5B2E4-F1-model_v4 Deoxyribodipyrimidine photo-lyase 0.979 10 459 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A3D2NCL0-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9769 10 105 GO:0003677
GO:0003904
GO:0009416
GO:0071949

Feature Viewer

pLDDT pTM Quality
93.58 0.91 High
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Predicted Structure (AlphaFold2)

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