F153481

General Info

Members Datasets Scaffolds Average Seq Length
132 29 264 429

Family's Representative Sequence

Representative Sequence 3300036712|Ga0316584_0016009|Ga0316584_0016009_998_2380
Length 460
Sequence MTLRKGRCAVIHRHNAVQMTREAPNINHEGKMGKTIAQKIFDSHHVDNPHDDIHVIRLDAVFCHEITTPVAILDLIRNGKDKVFDPDKIKVVIDHVSPAKDSKTAEQGKILRDWARRHHIRDFFDIGRNGVCHALFPEKGFVRPGYTVIMGDSHTCTHGAFGAFAAGVGTTDLEVGILKGVCALHYPQTLKIHIFGTLQKGVFAKDVILFIIGKLGVNGATGKVIEFTGPVVDAMDMAARMTLCNMAIEAGGTCGICYPDPMTVDYLWPFIENAYPSKADALDRFQQFVSDPDADYDQVIDIDVSNLAPLATYGFKPDQVKPVAELAGTAVDQVYIGSCTNGRIEDLRTAAGILKGNTIRDTVRAIVSPATPHIFQQALDEGLIKIFMDAGFCVTNPTCGACLGMSNGVLAPGEICASTTNRNFNGRMGKGGMVHLMSPATAAATAIAGHICNSPLYEGE

Samples

Sample ID Description Type Environment
1 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
2 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
3 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
4 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
5 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
6 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
7 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
8 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
9 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
10 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
11 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
12 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
13 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
14 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
15 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
16 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
17 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
18 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
19 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
20 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
21 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
22 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
23 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
24 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
25 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
26 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
27 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
28 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
29 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.24
Metatranscriptomes 0
Isolates 0.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 78.79
Stem 0
Stem Tuber 0
Unclassified 0.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316584_0016009 3300036712 Bacteria 5372
2 Ga0265318_10002202 3300028577 Bacteria 10533
3 Ga0265316_10094614 3300031344 Bacteria 2276
4 Ga0307509_10184554 3300031507 Bacteria 1946
5 Ga0316575_10000057 3300031665 Bacteria 27133
6 Ga0316575_10000144 3300031665 Bacteria 18022
7 Ga0316575_10003634 3300031665 Bacteria 5350
8 Ga0316575_10048121 3300031665 Bacteria 1695
9 Ga0316579_10001062 3300031691 Bacteria 9718
10 Ga0316576_10002748 3300031727 Bacteria 10091
11 Ga0316576_10014811 3300031727 Bacteria 5214
12 Ga0316576_10035302 3300031727 Bacteria 3569
13 Ga0316576_10051091 3300031727 Bacteria 3008
14 Ga0316576_10067172 3300031727 Bacteria 2639
15 Ga0316576_10070378 3300031727 Bacteria 2580
16 Ga0316576_10178668 3300031727 Bacteria 1601
17 Ga0316578_10001535 3300031728 Bacteria 9486
18 Ga0316578_10003944 3300031728 Bacteria 6909
19 Ga0316578_10036477 3300031728 Bacteria 2829
20 Ga0316578_10076468 3300031728 Bacteria 1988
21 Ga0316577_10001335 3300031733 Bacteria 11565
22 Ga0316577_10003070 3300031733 Bacteria 8380
23 Ga0316577_10020236 3300031733 Bacteria 3689
24 Ga0316577_10111784 3300031733 Bacteria 1533
25 Ga0316583_10000128 3300032133 Bacteria 17702
26 Ga0316583_10002057 3300032133 Bacteria 6900
27 Ga0316583_10030530 3300032133 Bacteria 1918
28 Ga0316585_10001735 3300032137 Bacteria 5804
29 Ga0316580_10004889 3300032139 Bacteria 3895
30 Ga0373928_0000152 3300035084 Bacteria 13269
31 Ga0316574_0000252 3300035398 Bacteria 19516
32 Ga0316574_0027123 3300035398 Bacteria 3449
33 Ga0316574_0044689 3300035398 Bacteria 2741
34 Ga0316574_0141737 3300035398 Bacteria 1549
35 Ga0316582_0004961 3300036647 Bacteria 6798
36 Ga0316582_0008208 3300036647 Bacteria 5599
37 Ga0316582_0015749 3300036647 Bacteria 4333
38 Ga0316582_0080571 3300036647 Bacteria 2125
39 Ga0316584_0006676 3300036712 Bacteria 7826
40 Ga0316584_0017918 3300036712 Bacteria 5101
41 Ga0316584_0041497 3300036712 Bacteria 3430
42 Ga0316584_0068957 3300036712 Bacteria 2651
43 Ga0316584_0095754 3300036712 Bacteria 2222
44 Ga0316584_0159384 3300036712 Bacteria 1677
45 Ga0316581_0014573 3300037588 Bacteria 2240
46 Ga0400484_19714 3300038725 Bacteria 11428
47 Ga0400484_28773 3300038725 Bacteria 17886
48 Ga0400490_06036 3300038726 Bacteria 1964
49 Ga0400490_60022 3300038726 Bacteria 33981
50 Ga0400485_02854 3300038735 Bacteria 9544
51 Ga0400485_08956 3300038735 Bacteria 97119
52 Ga0400485_14267 3300038735 Bacteria 34422
53 Ga0400485_22137 3300038735 Bacteria 3905
54 Ga0400488_10295 3300038741 Bacteria 1542
55 Ga0400488_54453 3300038741 Bacteria 5784
56 Ga0400486_04454 3300038742 Bacteria 77452
57 Ga0400486_05265 3300038742 Bacteria 61476
58 Ga0400486_12398 3300038742 Bacteria 2729
59 Ga0400486_12740 3300038742 Bacteria 11177
60 Ga0400486_28951 3300038742 Bacteria 11182
61 Ga0400483_087347 3300039062 Bacteria 17357
62 Ga0400483_126622 3300039062 Bacteria 6088
63 Ga0400483_134954 3300039062 Bacteria 2989
64 Ga0400483_207829 3300039062 Bacteria 67117
65 Ga0400483_269129 3300039062 Bacteria 19498
66 Ga0400489_16533 3300039093 Bacteria 17685
67 Ga0400489_37886 3300039093 Bacteria 33445
68 Ga0400489_54353 3300039093 Bacteria 32035
69 Ga0400489_67717 3300039093 Bacteria 11639
70 Ga0400489_81224 3300039093 Bacteria 33201
71 Ga0400487_24802 3300039110 Bacteria 65057
72 Ga0451577_0000050 3300042876 Bacteria 301123
73 Ga0451577_0000398 3300042876 Bacteria 79644
74 Ga0451577_0000465 3300042876 Bacteria 70232
75 Ga0451577_0001583 3300042876 Bacteria 29702
76 Ga0451577_0004892 3300042876 Bacteria 13965
77 Ga0451577_0016220 3300042876 Bacteria 6903
78 Ga0451577_0061208 3300042876 Bacteria 3357
79 Ga0451577_0227537 3300042876 Unclassified 1686
80 Ga0453683_0000002 3300044673 Bacteria 1244396
81 Ga0453683_0000014 3300044673 Bacteria 364381
82 Ga0453683_0000053 3300044673 Bacteria 197912
83 Ga0453683_0000098 3300044673 Bacteria 132195
84 Ga0453683_0000138 3300044673 Bacteria 105792
85 Ga0453683_0000177 3300044673 Bacteria 88678
86 Ga0453683_0000566 3300044673 Bacteria 40890
87 Ga0453683_0000773 3300044673 Bacteria 31774
88 Ga0453683_0000972 3300044673 Bacteria 27120
89 Ga0453683_0002281 3300044673 Bacteria 15131
90 Ga0453683_0005181 3300044673 Bacteria 9129
91 Ga0453683_0008286 3300044673 Bacteria 6988
92 Ga0453683_0019398 3300044673 Bacteria 4356
93 Ga0453683_0028524 3300044673 Bacteria 3533
94 Ga0453683_0035615 3300044673 Bacteria 3136
95 Ga0453684_0000061 3300044712 Bacteria 489946
96 Ga0453684_0000210 3300044712 Bacteria 255463
97 Ga0453684_0000486 3300044712 Bacteria 156745
98 Ga0453684_0000551 3300044712 Bacteria 141549
99 Ga0453684_0000619 3300044712 Bacteria 129756
100 Ga0453684_0001180 3300044712 Bacteria 80973
101 Ga0453684_0001383 3300044712 Bacteria 70232
102 Ga0453684_0001665 3300044712 Bacteria 60216
103 Ga0453684_0004116 3300044712 Bacteria 31535
104 Ga0453684_0004728 3300044712 Bacteria 28157
105 Ga0453684_0006292 3300044712 Bacteria 22714
106 Ga0453684_0008485 3300044712 Bacteria 18377
107 Ga0453684_0009498 3300044712 Bacteria 17006
108 Ga0453684_0023012 3300044712 Bacteria 9211
109 Ga0453684_0024878 3300044712 Bacteria 8719
110 Ga0453684_0035529 3300044712 Bacteria 6885
111 Ga0453684_0041237 3300044712 Bacteria 6249
112 Ga0453684_0051247 3300044712 Bacteria 5415
113 Ga0453684_0055332 3300044712 Bacteria 5159
114 Ga0453684_0058281 3300044712 Bacteria 4989
115 Ga0453684_0074726 3300044712 Bacteria 4265
116 Ga0453684_0078777 3300044712 Bacteria 4122
117 Ga0453684_0087771 3300044712 Bacteria 3853
118 Ga0453684_0144027 3300044712 Bacteria 2841
119 Ga0453684_0224240 3300044712 Bacteria 2175
120 Ga0453684_0299942 3300044712 Bacteria 1826
121 Ga0453684_0428476 3300044712 Bacteria 1476
122 Ga0451576_0000001 3300045051 Bacteria 1802108
123 Ga0451576_0000257 3300045051 Bacteria 129821
124 Ga0451576_0000566 3300045051 Bacteria 78998
125 Ga0451576_0000573 3300045051 Bacteria 78637
126 Ga0451576_0000956 3300045051 Bacteria 54199
127 Ga0451576_0001317 3300045051 Bacteria 42974
128 Ga0451576_0001815 3300045051 Bacteria 34787
129 Ga0451576_0058315 3300045051 Bacteria 4035
130 Ga0451576_0188527 3300045051 Bacteria 2154
131 Ga0451576_0333117 3300045051 Bacteria 1588
132 2740991634 2740891818 Bacteria 6711283
133 Ga0316584_0016009
134 Ga0265318_10002202
135 Ga0265316_10094614
136 Ga0307509_10184554
137 Ga0316575_10000057
138 Ga0316575_10000144
139 Ga0316575_10003634
140 Ga0316575_10048121
141 Ga0316579_10001062
142 Ga0316576_10002748
143 Ga0316576_10014811
144 Ga0316576_10035302
145 Ga0316576_10051091
146 Ga0316576_10067172
147 Ga0316576_10070378
148 Ga0316576_10178668
149 Ga0316578_10001535
150 Ga0316578_10003944
151 Ga0316578_10036477
152 Ga0316578_10076468
153 Ga0316577_10001335
154 Ga0316577_10003070
155 Ga0316577_10020236
156 Ga0316577_10111784
157 Ga0316583_10000128
158 Ga0316583_10002057
159 Ga0316583_10030530
160 Ga0316585_10001735
161 Ga0316580_10004889
162 Ga0373928_0000152
163 Ga0316574_0000252
164 Ga0316574_0027123
165 Ga0316574_0044689
166 Ga0316574_0141737
167 Ga0316582_0004961
168 Ga0316582_0008208
169 Ga0316582_0015749
170 Ga0316582_0080571
171 Ga0316584_0006676
172 Ga0316584_0017918
173 Ga0316584_0041497
174 Ga0316584_0068957
175 Ga0316584_0095754
176 Ga0316584_0159384
177 Ga0316581_0014573
178 Ga0400484_19714
179 Ga0400484_28773
180 Ga0400490_06036
181 Ga0400490_60022
182 Ga0400485_02854
183 Ga0400485_08956
184 Ga0400485_14267
185 Ga0400485_22137
186 Ga0400488_10295
187 Ga0400488_54453
188 Ga0400486_04454
189 Ga0400486_05265
190 Ga0400486_12398
191 Ga0400486_12740
192 Ga0400486_28951
193 Ga0400483_087347
194 Ga0400483_126622
195 Ga0400483_134954
196 Ga0400483_207829
197 Ga0400483_269129
198 Ga0400489_16533
199 Ga0400489_37886
200 Ga0400489_54353
201 Ga0400489_67717
202 Ga0400489_81224
203 Ga0400487_24802
204 Ga0451577_0000050
205 Ga0451577_0000398
206 Ga0451577_0000465
207 Ga0451577_0001583
208 Ga0451577_0004892
209 Ga0451577_0016220
210 Ga0451577_0061208
211 Ga0451577_0227537
212 Ga0453683_0000002
213 Ga0453683_0000014
214 Ga0453683_0000053
215 Ga0453683_0000098
216 Ga0453683_0000138
217 Ga0453683_0000177
218 Ga0453683_0000566
219 Ga0453683_0000773
220 Ga0453683_0000972
221 Ga0453683_0002281
222 Ga0453683_0005181
223 Ga0453683_0008286
224 Ga0453683_0019398
225 Ga0453683_0028524
226 Ga0453683_0035615
227 Ga0453684_0000061
228 Ga0453684_0000210
229 Ga0453684_0000486
230 Ga0453684_0000551
231 Ga0453684_0000619
232 Ga0453684_0001180
233 Ga0453684_0001383
234 Ga0453684_0001665
235 Ga0453684_0004116
236 Ga0453684_0004728
237 Ga0453684_0006292
238 Ga0453684_0008485
239 Ga0453684_0009498
240 Ga0453684_0023012
241 Ga0453684_0024878
242 Ga0453684_0035529
243 Ga0453684_0041237
244 Ga0453684_0051247
245 Ga0453684_0055332
246 Ga0453684_0058281
247 Ga0453684_0074726
248 Ga0453684_0078777
249 Ga0453684_0087771
250 Ga0453684_0144027
251 Ga0453684_0224240
252 Ga0453684_0299942
253 Ga0453684_0428476
254 Ga0451576_0000001
255 Ga0451576_0000257
256 Ga0451576_0000566
257 Ga0451576_0000573
258 Ga0451576_0000956
259 Ga0451576_0001317
260 Ga0451576_0001815
261 Ga0451576_0058315
262 Ga0451576_0188527
263 Ga0451576_0333117
264 2740991634

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00330

Aconitase

Aconitase family (aconitate hydratase)

321

449

0.97

PF00330

Aconitase

Aconitase family (aconitate hydratase)

38

329

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4kp1-assembly1.cif.gz_A crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) 0.9108 2 425
4kp2-assembly1.cif.gz_B-2 crystal structure of homoaconitase large subunit from methanococcus jannaschii (mj1003) 0.9099 4 421
4kp1-assembly1.cif.gz_A crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) 0.9067 2 425
4nqy-assembly1.cif.gz_A the reduced form of mj0499 0.9025 4 424
4kp2-assembly1.cif.gz_B-2 crystal structure of homoaconitase large subunit from methanococcus jannaschii (mj1003) 0.9021 4 421
ID Description Score Start End Superfamily
4kp2B02 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9649 286 421 3.30.499.10
af_Q9UT74_348_492_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9621 297 420 3.30.499.10
af_P0A6A6_327_466_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9613 295 427 3.30.499.10
af_O14289_312_505_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9247 288 426 3.30.499.10
af_O14289_10_298_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9131 4 273 3.30.499.10
ID Description Score Start End GO Terms
AF-A0A6N9VBJ5-F1-model_v4 3-isopropylmalate dehydratase (EC 4.2.1.33) 0.9939 153 232 GO:0003861
GO:0009098
GO:0046872
GO:0051539
AF-A0A2N6DUL7-F1-model_v4 3-isopropylmalate dehydratase 0.9923 156 425 GO:0016829
GO:0019752
GO:0046872
GO:0051536
AF-A0A2N6DUL7-F1-model_v4 3-isopropylmalate dehydratase 0.9814 156 425 GO:0016829
GO:0019752
GO:0046872
GO:0051536
AF-A0A2N2ARV8-F1-model_v4 deleted 0.9804 276 422
AF-A5G7U4-F1-model_v4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase) 0.9783 1 427 GO:0003861
GO:0009098
GO:0046872
GO:0051539

Map