F152029

General Info

Members Datasets Scaffolds Average Seq Length
132 87 264 334

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100213810|Ga0070698_1002138101
Length 365
Sequence MDNPLSPVSLLPSYPSSAKPMNVTELTRKLIDLPSVTGDERAVGFFLKEHLESLGYFVKMQEVARDRFNVFATTGAPSRVVLSTHMDTVPPFIQSSEDDKNIYGRGACDAKGIIAAQINAAQRLRGEGIQEVGLLFTVDEEQGSLGAQIANLEKPDGVEYLINGEPTDNKLASATKGSIGLNLHTRGRAAHSAYPEQGESAIEKLLDVLERIRQCKWPVDDLLGETTCNIGVIGGGTRANVVPDEAFADLRIRLVSSAAPVRELIEAAIAGRAEVEYLSEHEPVRLETIDGIDQCVVRFTTDIPYLSNWGRPLLLGPGSILNAHTEHEFVEKQELEQAKEIYTQLVRTLLAKDAVTRELVEGVSR

Samples

Sample ID Description Type Environment
1 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
17 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
18 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
29 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
30 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
40 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
81 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
84 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
85 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
86 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
87 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.52
Nodule 0
Rhizoplane 0.76
Rhizosphere 96.97
Stem 0
Stem Tuber 0
Unclassified 17.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070698_100213810 3300005471 Bacteria 1862
2 JGI25406J46586_10007500 3300003203 Unclassified 4975
3 Ga0065715_10099887 3300005293 Bacteria 3359
4 Ga0065707_10188260 3300005295 Unclassified 1376
5 Ga0070690_100051117 3300005330 Bacteria 2637
6 Ga0070670_100000601 3300005331 Bacteria 28370
7 Ga0068869_100003854 3300005334 Bacteria 9255
8 Ga0068869_100130414 3300005334 Bacteria 1932
9 Ga0068869_100191702 3300005334 Bacteria 1607
10 Ga0070680_100001815 3300005336 Bacteria 15671
11 Ga0070689_100013491 3300005340 Bacteria 5915
12 Ga0070689_100176476 3300005340 Bacteria 1733
13 Ga0070691_10054684 3300005341 Bacteria 1911
14 Ga0070687_100069167 3300005343 Unclassified 1890
15 Ga0070669_100003766 3300005353 Bacteria 10954
16 Ga0070669_100007276 3300005353 Bacteria 7942
17 Ga0070671_100187824 3300005355 Bacteria 1751
18 Ga0070674_100224558 3300005356 Bacteria 1463
19 Ga0070659_100061996 3300005366 Bacteria 2955
20 Ga0070703_10000182 3300005406 Bacteria 30679
21 Ga0070701_10047453 3300005438 Bacteria 2212
22 Ga0070705_100000034 3300005440 Bacteria 67768
23 Ga0070694_100027737 3300005444 Bacteria 3681
24 Ga0070694_100193666 3300005444 Bacteria 1511
25 Ga0070708_100041398 3300005445 Bacteria 4039
26 Ga0070708_100094129 3300005445 Bacteria 2733
27 Ga0070685_10066942 3300005466 Bacteria 2118
28 Ga0070706_100000020 3300005467 Bacteria 165628
29 Ga0070706_100008026 3300005467 Bacteria 9850
30 Ga0070706_100011024 3300005467 Bacteria 8395
31 Ga0070706_100098639 3300005467 Bacteria 2715
32 Ga0070707_100123350 3300005468 Bacteria 2516
33 Ga0070707_100184492 3300005468 Bacteria 2034
34 Ga0070698_100000058 3300005471 Bacteria 79013
35 Ga0070698_100001228 3300005471 Bacteria 28493
36 Ga0070698_100188195 3300005471 Unclassified 2002
37 Ga0070699_100000828 3300005518 Bacteria 28687
38 Ga0070699_100098651 3300005518 Unclassified 2559
39 Ga0070697_100000156 3300005536 Bacteria 55361
40 Ga0070697_100001357 3300005536 Bacteria 18519
41 Ga0070697_100008967 3300005536 Bacteria 7816
42 Ga0070697_100063405 3300005536 Bacteria 3018
43 Ga0070672_100130369 3300005543 Bacteria 2065
44 Ga0070686_100010826 3300005544 Bacteria 5158
45 Ga0070695_100162839 3300005545 Unclassified 1567
46 Ga0070695_100361830 3300005545 Unclassified 1090
47 Ga0070696_100000428 3300005546 Bacteria 26408
48 Ga0070696_100040599 3300005546 Bacteria 3213
49 Ga0070696_100067182 3300005546 Bacteria 2516
50 Ga0070704_100003679 3300005549 Bacteria 8822
51 Ga0070704_100094607 3300005549 Bacteria 2236
52 Ga0070704_100331239 3300005549 Bacteria 1279
53 Ga0068857_100110806 3300005577 Bacteria 2467
54 Ga0068859_100008027 3300005617 Bacteria 10703
55 Ga0068859_100008206 3300005617 Bacteria 10595
56 Ga0068859_100511753 3300005617 Bacteria 1295
57 Ga0068864_100374048 3300005618 Unclassified 1349
58 Ga0068866_10154440 3300005718 Bacteria 1332
59 Ga0068861_100060230 3300005719 Unclassified 2909
60 Ga0068863_100025472 3300005841 Bacteria 5641
61 Ga0068862_100152217 3300005844 Unclassified 2059
62 Ga0081540_1116881 3300005983 Unclassified 1115
63 Ga0081539_10001697 3300005985 Bacteria 35528
64 Ga0081539_10025998 3300005985 Bacteria 3749
65 Ga0081539_10143585 3300005985 Bacteria 1157
66 Ga0070716_100000003 3300006173 Bacteria 312721
67 Ga0070716_100025160 3300006173 Bacteria 3174
68 Ga0068871_100054657 3300006358 Unclassified 3240
69 Ga0075431_100187497 3300006847 Bacteria 2120
70 Ga0075434_100182955 3300006871 Bacteria 2117
71 Ga0075434_100324542 3300006871 Bacteria 1560
72 Ga0068865_100293093 3300006881 Bacteria 1299
73 Ga0097620_100008027 3300006931 Bacteria 10703
74 Ga0097620_100008204 3300006931 Bacteria 10595
75 Ga0097620_100511761 3300006931 Bacteria 1295
76 Ga0105245_10198537 3300009098 Bacteria 1925
77 Ga0114129_10007938 3300009147 Bacteria 15108
78 Ga0105241_10055563 3300009174 Bacteria 3033
79 Ga0105249_10044953 3300009553 Bacteria 4016
80 Ga0105249_10114008 3300009553 Bacteria 2559
81 Ga0157373_10053198 3300013100 Bacteria 2879
82 Ga0157373_10066572 3300013100 Bacteria 2548
83 Ga0163162_10091286 3300013306 Bacteria 3128
84 Ga0163163_10074092 3300014325 Bacteria 3395
85 Ga0157380_10021127 3300014326 Bacteria 4879
86 Ga0157380_10056442 3300014326 Bacteria 3123
87 Ga0157380_10111816 3300014326 Unclassified 2297
88 Ga0157380_10180172 3300014326 Unclassified 1856
89 Ga0163161_10042511 3300017792 Unclassified 3269
90 Ga0207653_10000105 3300025885 Bacteria 59153
91 Ga0207653_10007942 3300025885 Bacteria 3307
92 Ga0207642_10152914 3300025899 Unclassified 1230
93 Ga0207645_10065292 3300025907 Bacteria 2326
94 Ga0207684_10000234 3300025910 Bacteria 84365
95 Ga0207684_10024998 3300025910 Bacteria 5090
96 Ga0207684_10067724 3300025910 Bacteria 3034
97 Ga0207662_10061669 3300025918 Bacteria 2252
98 Ga0207646_10015354 3300025922 Bacteria 7235
99 Ga0207646_10239307 3300025922 Unclassified 1640
100 Ga0207681_10001095 3300025923 Bacteria 17555
101 Ga0207681_10278874 3300025923 Bacteria 1315
102 Ga0207650_10002500 3300025925 Bacteria 12770
103 Ga0207690_10042639 3300025932 Bacteria 2982
104 Ga0207669_10166490 3300025937 Bacteria 1564
105 Ga0207665_10225450 3300025939 Bacteria 1375
106 Ga0207691_10002804 3300025940 Bacteria 16987
107 Ga0207689_10002998 3300025942 Bacteria 15569
108 Ga0207689_10008900 3300025942 Bacteria 8709
109 Ga0207689_10013676 3300025942 Bacteria 6920
110 Ga0207689_10103742 3300025942 Bacteria 2336
111 Ga0207712_10222665 3300025961 Bacteria 1509
112 Ga0207658_10212947 3300025986 Bacteria 1621
113 Ga0207708_10351814 3300026075 Unclassified 1209
114 Ga0207641_10024196 3300026088 Bacteria 5006
115 Ga0207641_10324183 3300026088 Bacteria 1461
116 Ga0207648_10010829 3300026089 Bacteria 8619
117 Ga0207676_10089106 3300026095 Unclassified 2527
118 Ga0207674_10208297 3300026116 Bacteria 1904
119 Ga0207683_10488235 3300026121 Unclassified 1137
120 Ga0268265_10040086 3300028380 Bacteria 3457
121 Ga0268264_10080157 3300028381 Unclassified 2787
122 Ga0316178_1010918 3300030735 Bacteria 1163
123 Ga0307513_10001314 3300031456 Bacteria 35933
124 Ga0453683_0093580 3300044673 Bacteria 1885
125 Ga0495621_0024732 3300046539 Bacteria 2009
126 Ga0496112_0275904 3300048915 Unclassified 1629
127 nmdc:mga0k408_105327_c1 3300050493 Bacteria 1665
128 nmdc:mga05p37_192_c1 3300050507 Bacteria 60720
129 nmdc:mga05p37_292599_c1 3300050507 Bacteria 1938
130 nmdc:mga0a205_150745_c1 3300050515 Bacteria 2225
131 Ga0500645_064472 3300053730 Unclassified 1057
132 Ga0530510_0226628 3300061734 Bacteria 1390
133 Ga0070698_100213810
134 JGI25406J46586_10007500
135 Ga0065715_10099887
136 Ga0065707_10188260
137 Ga0070690_100051117
138 Ga0070670_100000601
139 Ga0068869_100003854
140 Ga0068869_100130414
141 Ga0068869_100191702
142 Ga0070680_100001815
143 Ga0070689_100013491
144 Ga0070689_100176476
145 Ga0070691_10054684
146 Ga0070687_100069167
147 Ga0070669_100003766
148 Ga0070669_100007276
149 Ga0070671_100187824
150 Ga0070674_100224558
151 Ga0070659_100061996
152 Ga0070703_10000182
153 Ga0070701_10047453
154 Ga0070705_100000034
155 Ga0070694_100027737
156 Ga0070694_100193666
157 Ga0070708_100041398
158 Ga0070708_100094129
159 Ga0070685_10066942
160 Ga0070706_100000020
161 Ga0070706_100008026
162 Ga0070706_100011024
163 Ga0070706_100098639
164 Ga0070707_100123350
165 Ga0070707_100184492
166 Ga0070698_100000058
167 Ga0070698_100001228
168 Ga0070698_100188195
169 Ga0070699_100000828
170 Ga0070699_100098651
171 Ga0070697_100000156
172 Ga0070697_100001357
173 Ga0070697_100008967
174 Ga0070697_100063405
175 Ga0070672_100130369
176 Ga0070686_100010826
177 Ga0070695_100162839
178 Ga0070695_100361830
179 Ga0070696_100000428
180 Ga0070696_100040599
181 Ga0070696_100067182
182 Ga0070704_100003679
183 Ga0070704_100094607
184 Ga0070704_100331239
185 Ga0068857_100110806
186 Ga0068859_100008027
187 Ga0068859_100008206
188 Ga0068859_100511753
189 Ga0068864_100374048
190 Ga0068866_10154440
191 Ga0068861_100060230
192 Ga0068863_100025472
193 Ga0068862_100152217
194 Ga0081540_1116881
195 Ga0081539_10001697
196 Ga0081539_10025998
197 Ga0081539_10143585
198 Ga0070716_100000003
199 Ga0070716_100025160
200 Ga0068871_100054657
201 Ga0075431_100187497
202 Ga0075434_100182955
203 Ga0075434_100324542
204 Ga0068865_100293093
205 Ga0097620_100008027
206 Ga0097620_100008204
207 Ga0097620_100511761
208 Ga0105245_10198537
209 Ga0114129_10007938
210 Ga0105241_10055563
211 Ga0105249_10044953
212 Ga0105249_10114008
213 Ga0157373_10053198
214 Ga0157373_10066572
215 Ga0163162_10091286
216 Ga0163163_10074092
217 Ga0157380_10021127
218 Ga0157380_10056442
219 Ga0157380_10111816
220 Ga0157380_10180172
221 Ga0163161_10042511
222 Ga0207653_10000105
223 Ga0207653_10007942
224 Ga0207642_10152914
225 Ga0207645_10065292
226 Ga0207684_10000234
227 Ga0207684_10024998
228 Ga0207684_10067724
229 Ga0207662_10061669
230 Ga0207646_10015354
231 Ga0207646_10239307
232 Ga0207681_10001095
233 Ga0207681_10278874
234 Ga0207650_10002500
235 Ga0207690_10042639
236 Ga0207669_10166490
237 Ga0207665_10225450
238 Ga0207691_10002804
239 Ga0207689_10002998
240 Ga0207689_10008900
241 Ga0207689_10013676
242 Ga0207689_10103742
243 Ga0207712_10222665
244 Ga0207658_10212947
245 Ga0207708_10351814
246 Ga0207641_10024196
247 Ga0207641_10324183
248 Ga0207648_10010829
249 Ga0207676_10089106
250 Ga0207674_10208297
251 Ga0207683_10488235
252 Ga0268265_10040086
253 Ga0268264_10080157
254 Ga0316178_1010918
255 Ga0307513_10001314
256 Ga0453683_0093580
257 Ga0495621_0024732
258 Ga0496112_0275904
259 nmdc:mga0k408_105327_c1
260 nmdc:mga05p37_192_c1
261 nmdc:mga05p37_292599_c1
262 nmdc:mga0a205_150745_c1
263 Ga0500645_064472
264 Ga0530510_0226628

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07687

M20_dimer

Peptidase dimerisation domain

173

280

0.89

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

81

348

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vo3-assembly1.cif.gz_A-2 crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) 0.8942 3 328
5vo3-assembly1.cif.gz_A-2 crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) 0.884 3 328
1q7l-assembly1.cif.gz_A zn-binding domain of the t347g mutant of human aminoacylase-i 0.8641 3 143
7t1q-assembly1.cif.gz_B crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid 0.8635 1 329
7t1q-assembly1.cif.gz_B crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid 0.8611 1 329
ID Description Score Start End Superfamily
af_Q18621_173_267_3.30.70.360 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9683 162 254 3.30.70.360
af_Q18621_173_267_3.30.70.360 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9389 162 254 3.30.70.360
af_Q18621_6_172_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9225 3 147 3.40.630.10
af_O74916_223_328_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9204 158 259 3.40.630.10
af_Q55DL1_230_361_3.30.70.360 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.8922 158 259 3.30.70.360
ID Description Score Start End GO Terms
AF-A0A2V7ISU3-F1-model_v4 Peptidase dimerization protein 0.9657 1 328 GO:0016787
GO:0046872
AF-A0A2V7ISU3-F1-model_v4 Peptidase dimerization protein 0.96 1 328 GO:0016787
GO:0046872
AF-A0A7C5VC95-F1-model_v4 M20/M25/M40 family metallo-hydrolase 0.9487 2 328 GO:0016787
GO:0046872
AF-W0RKV9-F1-model_v4 Peptidase M20 0.9487 1 329 GO:0016787
GO:0046872
AF-A0A2V7ZBG5-F1-model_v4 Peptidase dimerization protein 0.9469 3 329 GO:0016787
GO:0046872

Map