F149702

General Info

Members Datasets Scaffolds Average Seq Length
131 85 262 334

Family's Representative Sequence

Representative Sequence 3300031240|Ga0265320_10000030|Ga0265320_1000003064
Length 357
Sequence MSQPASSSTQPAGKAILLRHETILLGVLVAEWVYFYFAGTTVRGTVTLGFGTMNRQFDILRHSCEIGLLALALTPVILTGGIDLSVGSLMGLCAILFGKLWQDAHFPLALAIVATLGIGAVAGGLNAALITLLRLPPLIVTLGTYSLFRGLAEAITHGADTFTNFPASFLFLGQERVLGLPTQAWIFFGVTAAYWLLVHQTTFGRSFRAIGFAPEGARYAGLPVERRLAMVYILAGFVSALAAIIYTARLGQAKADAGTGYELFAITAVVLGGTSIFGGVGSIYGTLLGVLAIGVLKSGLGTVPFVIKQGVGEEMSGMLTGALLLIALTGGVLPKILSNWRARRQNARLTPQPSHPA

Samples

Sample ID Description Type Environment
1 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
15 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
17 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
18 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
19 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
23 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
35 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
36 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
37 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
38 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
39 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
42 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
43 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
44 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
45 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
48 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
49 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
51 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
52 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
53 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
54 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
55 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
56 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
57 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
58 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
59 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
60 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
61 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
62 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
63 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
64 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
65 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
66 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
67 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
68 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
69 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
70 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
71 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
72 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
73 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
81 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
82 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.76
Rhizosphere 97.71
Stem 0
Stem Tuber 0
Unclassified 12.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265320_10000030 3300031240 Bacteria 155388
2 Ga0070683_100014159 3300005329 Bacteria 6967
3 Ga0068868_100173307 3300005338 Bacteria 1787
4 Ga0070689_100001196 3300005340 Bacteria 16422
5 Ga0070668_100194312 3300005347 Unclassified 1663
6 Ga0070688_100033038 3300005365 Bacteria 3125
7 Ga0070701_10013371 3300005438 Bacteria 3732
8 Ga0070694_100037072 3300005444 Bacteria 3233
9 Ga0070684_100220805 3300005535 Unclassified 1729
10 Ga0070684_100352744 3300005535 Bacteria 1353
11 Ga0070695_100190210 3300005545 Bacteria 1460
12 Ga0068857_100021813 3300005577 Bacteria 5637
13 Ga0068858_100071651 3300005842 Unclassified 3215
14 Ga0097621_100014539 3300006237 Bacteria 5894
15 Ga0105240_10000053 3300009093 Bacteria 225578
16 Ga0105240_10019126 3300009093 Bacteria 9158
17 Ga0111539_10597813 3300009094 Unclassified 1285
18 Ga0105245_10127997 3300009098 Unclassified 2379
19 Ga0105237_10190255 3300009545 Bacteria 2052
20 Ga0105238_10010626 3300009551 Bacteria 9245
21 Ga0105238_10192761 3300009551 Unclassified 2014
22 Ga0157370_10243392 3300013104 Unclassified 1664
23 Ga0157372_10493719 3300013307 Unclassified 1427
24 Ga0157375_10000376 3300013308 Bacteria 40655
25 Ga0163163_10003791 3300014325 Bacteria 12876
26 Ga0163163_10057273 3300014325 Bacteria 3853
27 Ga0207705_10016354 3300025909 Bacteria 5319
28 Ga0207707_10039278 3300025912 Bacteria 4138
29 Ga0207695_10000239 3300025913 Bacteria 143850
30 Ga0207657_10084388 3300025919 Bacteria 2662
31 Ga0207694_10015149 3300025924 Bacteria 5815
32 Ga0207670_10007174 3300025936 Bacteria 6207
33 Ga0207667_10032383 3300025949 Bacteria 5635
34 Ga0207668_10186360 3300025972 Unclassified 1641
35 Ga0207639_10000010 3300026041 Bacteria 415264
36 Ga0207702_10216702 3300026078 Bacteria 1782
37 Ga0268265_10091648 3300028380 Unclassified 2431
38 Ga0265337_1000114 3300028556 Bacteria 40772
39 Ga0265337_1006992 3300028556 Bacteria 4272
40 Ga0265319_1000046 3300028563 Bacteria 101716
41 Ga0265319_1001067 3300028563 Bacteria 17103
42 Ga0265319_1001729 3300028563 Bacteria 12567
43 Ga0265319_1001769 3300028563 Bacteria 12404
44 Ga0265319_1018768 3300028563 Bacteria 2598
45 Ga0265334_10001352 3300028573 Bacteria 11828
46 Ga0265318_10000005 3300028577 Bacteria 303630
47 Ga0265318_10002027 3300028577 Bacteria 11190
48 Ga0265318_10064819 3300028577 Bacteria 1359
49 Ga0265318_10068792 3300028577 Bacteria 1313
50 Ga0265336_10012694 3300028666 Bacteria 2828
51 Ga0307515_10092311 3300028794 Bacteria 3770
52 Ga0265338_10026477 3300028800 Bacteria 5846
53 Ga0265320_10000673 3300031240 Bacteria 26058
54 Ga0265320_10001514 3300031240 Bacteria 16909
55 Ga0265320_10004746 3300031240 Bacteria 8851
56 Ga0265320_10007544 3300031240 Bacteria 6745
57 Ga0265320_10007593 3300031240 Bacteria 6720
58 Ga0265313_10001296 3300031595 Bacteria 23644
59 Ga0265313_10015096 3300031595 Bacteria 4523
60 Ga0307508_10000024 3300031616 Bacteria 176806
61 Ga0265314_10001794 3300031711 Bacteria 23144
62 Ga0265314_10003748 3300031711 Bacteria 14555
63 Ga0265314_10011039 3300031711 Bacteria 7490
64 Ga0265314_10062526 3300031711 Bacteria 2530
65 Ga0307413_10136356 3300031824 Bacteria 1688
66 Ga0307407_10054934 3300031903 Bacteria 2299
67 Ga0307414_10000023 3300032004 Bacteria 208037
68 Ga0307414_10049835 3300032004 Bacteria 2897
69 Ga0373956_0027301 3300035119 Bacteria 2478
70 Ga0373935_0016758 3300035692 Bacteria 4435
71 Ga0373937_0070873 3300036401 Bacteria 3215
72 Ga0373925_0308035 3300037068 Bacteria 1280
73 Ga0451576_0022209 3300045051 Bacteria 6884
74 Ga0451576_0146054 3300045051 Bacteria 2466
75 Ga0451576_0243858 3300045051 Bacteria 1877
76 Ga0451576_0260981 3300045051 Bacteria 1811
77 Ga0495592_0000063 3300046454 Bacteria 96422
78 Ga0495592_0016760 3300046454 Bacteria 5562
79 Ga0495592_0103934 3300046454 Bacteria 2020
80 Ga0495641_0102565 3300046461 Bacteria 1276
81 Ga0495653_0187875 3300046463 Unclassified 1412
82 Ga0495664_0042470 3300046477 Bacteria 2693
83 Ga0495618_0002034 3300046514 Bacteria 13270
84 Ga0495628_0000613 3300046516 Bacteria 32741
85 Ga0495630_0055267 3300046517 Bacteria 2975
86 Ga0495630_0066405 3300046517 Unclassified 2711
87 Ga0495666_0006923 3300046526 Bacteria 5695
88 Ga0495652_0015701 3300046529 Bacteria 6778
89 Ga0495652_0131901 3300046529 Bacteria 1977
90 Ga0495640_0019787 3300046533 Bacteria 4966
91 Ga0495640_0042506 3300046533 Bacteria 3170
92 Ga0495586_0000235 3300046535 Bacteria 36786
93 Ga0495586_0004285 3300046535 Bacteria 7624
94 Ga0495586_0239796 3300046535 Bacteria 1033
95 Ga0495645_0009472 3300046543 Bacteria 6804
96 Ga0495645_0033671 3300046543 Bacteria 3738
97 Ga0495599_0024738 3300046678 Bacteria 3755
98 Ga0495599_0070096 3300046678 Bacteria 2188
99 Ga0495599_0091750 3300046678 Unclassified 1895
100 Ga0495658_0052753 3300046683 Unclassified 2308
101 Ga0495658_0087953 3300046683 Bacteria 1835
102 Ga0495613_0033426 3300046689 Bacteria 3822
103 Ga0495624_0186353 3300046690 Unclassified 1263
104 Ga0495600_0280321 3300046809 Bacteria 1055
105 Ga0495604_0166877 3300047317 Bacteria 1552
106 Ga0495674_0030009 3300047319 Bacteria 4947
107 Ga0495674_0054747 3300047319 Bacteria 3502
108 Ga0495684_0038804 3300047471 Bacteria 3651
109 Ga0496107_0071972 3300048910 Bacteria 2513
110 Ga0501032_0001693 3300049569 Bacteria 17456
111 Ga0501033_0005882 3300049570 Bacteria 9639
112 Ga0501036_0012099 3300049572 Bacteria 7153
113 Ga0501043_0009805 3300049579 Bacteria 7507
114 Ga0501046_0000620 3300049580 Bacteria 34879
115 Ga0501046_0007133 3300049580 Bacteria 9829
116 Ga0501046_0017470 3300049580 Bacteria 5985
117 Ga0501046_0034901 3300049580 Bacteria 4056
118 Ga0501047_0011593 3300049581 Bacteria 8341
119 Ga0501047_0064548 3300049581 Bacteria 3531
120 Ga0501048_0214966 3300049582 Bacteria 1363
121 Ga0501227_000065 3300049665 Bacteria 16175
122 Ga0501080_0162641 3300049742 Bacteria 2061
123 Ga0501083_0001166 3300049744 Bacteria 17691
124 Ga0501083_0012516 3300049744 Bacteria 5936
125 Ga0501035_0000115 3300049822 Bacteria 98344
126 Ga0501035_0066529 3300049822 Bacteria 3198
127 Ga0501035_0130779 3300049822 Bacteria 2188
128 Ga0501044_0001476 3300049823 Bacteria 27579
129 Ga0501044_0004144 3300049823 Bacteria 16281
130 Ga0501044_0133359 3300049823 Bacteria 2476
131 Ga0495601_0200552 3300053077 Unclassified 1304
132 Ga0265320_10000030
133 Ga0070683_100014159
134 Ga0068868_100173307
135 Ga0070689_100001196
136 Ga0070668_100194312
137 Ga0070688_100033038
138 Ga0070701_10013371
139 Ga0070694_100037072
140 Ga0070684_100220805
141 Ga0070684_100352744
142 Ga0070695_100190210
143 Ga0068857_100021813
144 Ga0068858_100071651
145 Ga0097621_100014539
146 Ga0105240_10000053
147 Ga0105240_10019126
148 Ga0111539_10597813
149 Ga0105245_10127997
150 Ga0105237_10190255
151 Ga0105238_10010626
152 Ga0105238_10192761
153 Ga0157370_10243392
154 Ga0157372_10493719
155 Ga0157375_10000376
156 Ga0163163_10003791
157 Ga0163163_10057273
158 Ga0207705_10016354
159 Ga0207707_10039278
160 Ga0207695_10000239
161 Ga0207657_10084388
162 Ga0207694_10015149
163 Ga0207670_10007174
164 Ga0207667_10032383
165 Ga0207668_10186360
166 Ga0207639_10000010
167 Ga0207702_10216702
168 Ga0268265_10091648
169 Ga0265337_1000114
170 Ga0265337_1006992
171 Ga0265319_1000046
172 Ga0265319_1001067
173 Ga0265319_1001729
174 Ga0265319_1001769
175 Ga0265319_1018768
176 Ga0265334_10001352
177 Ga0265318_10000005
178 Ga0265318_10002027
179 Ga0265318_10064819
180 Ga0265318_10068792
181 Ga0265336_10012694
182 Ga0307515_10092311
183 Ga0265338_10026477
184 Ga0265320_10000673
185 Ga0265320_10001514
186 Ga0265320_10004746
187 Ga0265320_10007544
188 Ga0265320_10007593
189 Ga0265313_10001296
190 Ga0265313_10015096
191 Ga0307508_10000024
192 Ga0265314_10001794
193 Ga0265314_10003748
194 Ga0265314_10011039
195 Ga0265314_10062526
196 Ga0307413_10136356
197 Ga0307407_10054934
198 Ga0307414_10000023
199 Ga0307414_10049835
200 Ga0373956_0027301
201 Ga0373935_0016758
202 Ga0373937_0070873
203 Ga0373925_0308035
204 Ga0451576_0022209
205 Ga0451576_0146054
206 Ga0451576_0243858
207 Ga0451576_0260981
208 Ga0495592_0000063
209 Ga0495592_0016760
210 Ga0495592_0103934
211 Ga0495641_0102565
212 Ga0495653_0187875
213 Ga0495664_0042470
214 Ga0495618_0002034
215 Ga0495628_0000613
216 Ga0495630_0055267
217 Ga0495630_0066405
218 Ga0495666_0006923
219 Ga0495652_0015701
220 Ga0495652_0131901
221 Ga0495640_0019787
222 Ga0495640_0042506
223 Ga0495586_0000235
224 Ga0495586_0004285
225 Ga0495586_0239796
226 Ga0495645_0009472
227 Ga0495645_0033671
228 Ga0495599_0024738
229 Ga0495599_0070096
230 Ga0495599_0091750
231 Ga0495658_0052753
232 Ga0495658_0087953
233 Ga0495613_0033426
234 Ga0495624_0186353
235 Ga0495600_0280321
236 Ga0495604_0166877
237 Ga0495674_0030009
238 Ga0495674_0054747
239 Ga0495684_0038804
240 Ga0496107_0071972
241 Ga0501032_0001693
242 Ga0501033_0005882
243 Ga0501036_0012099
244 Ga0501043_0009805
245 Ga0501046_0000620
246 Ga0501046_0007133
247 Ga0501046_0017470
248 Ga0501046_0034901
249 Ga0501047_0011593
250 Ga0501047_0064548
251 Ga0501048_0214966
252 Ga0501227_000065
253 Ga0501080_0162641
254 Ga0501083_0001166
255 Ga0501083_0012516
256 Ga0501035_0000115
257 Ga0501035_0066529
258 Ga0501035_0130779
259 Ga0501044_0001476
260 Ga0501044_0004144
261 Ga0501044_0133359
262 Ga0495601_0200552

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02653

BPD_transp_2

Branched-chain amino acid transport system / permease component

56

328

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kyp-assembly4.cif.gz_N psabc from streptococcus pneumoniae in complex with fab 0.5822 38 300
4g1u-assembly1.cif.gz_B x-ray structure of the bacterial heme transporter hmuuv from yersinia pestis 0.5744 7 309
7kyo-assembly1.cif.gz_C-2 psabc from streptococcus pneumoniae in complex with fab 0.5653 38 301
4g1u-assembly1.cif.gz_B x-ray structure of the bacterial heme transporter hmuuv from yersinia pestis 0.5619 7 309
2nq2-assembly1.cif.gz_B an inward-facing conformation of a putative metal-chelate type abc transporter. 0.5588 6 306
ID Description Score Start End Superfamily
af_P0AE26_50_315_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9659 34 300 1.10.3470.10
af_P0AE26_50_315_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9588 34 300 1.10.3470.10
af_P0AGI1_45_314_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9565 34 300 1.10.3470.10
af_P0AFS1_34_305_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9553 36 300 1.10.3470.10
af_P39328_55_321_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9552 36 300 1.10.3470.10
ID Description Score Start End GO Terms
AF-A0A4Q2YMC6-F1-model_v4 ABC transporter permease 0.9894 6 267 GO:0005886
GO:0022857
AF-A0A2J7VBI9-F1-model_v4 Ribose import permease protein RbsC 0.9757 7 308 GO:0005886
GO:0022857
AF-A0A1V5KEQ5-F1-model_v4 Ribose transport system permease protein RbsC 0.9727 7 304 GO:0005886
GO:0022857
AF-A0A1G3KJ39-F1-model_v4 Autoinducer 2 import system permease protein LsrD 0.9708 2 297 GO:0005886
GO:0022857
AF-A0A1I5UFU9-F1-model_v4 Ribose transport system ATP-binding protein 0.9707 7 301 GO:0005524
GO:0005886
GO:0015611
GO:0016887

Map