F149273

General Info

Members Datasets Scaffolds Average Seq Length
131 99 262 348

Family's Representative Sequence

Representative Sequence 3300014325|Ga0163163_10203934|Ga0163163_102039342
Length 358
Sequence VASQRKSRQRAGAARASRFTPLRRAVRLPVWGDASLRLAAALFLVAIVVMIHWFDREGLKDSHYGHISFLDVVYFTMISITTTGFGDIAPVSNQSRLVEAVIVTPIRVVVLFIFVGAAYSLVIKRGWEKWRMARIQKQLSDHIVVLGFGVSGSEAVAELIARGTDPHDIVVMETDPERLAAAEEMGCNVIEADATRDENQMAVRIDKARTVLVSAGRDDASILIVLTARHLAPDVPISVVIRADDNELLARQAGADNVINPVRFTGLLLAGSAQGAHIADYLADLASVSGTVQLIERPVQAEEIGRSLDDLASGGRGLRVYRDGLQRGFWEPEARVLQAGDVVVEIRPTEGTEREPTD

Samples

Sample ID Description Type Environment
1 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
16 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
17 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
18 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
19 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
26 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
34 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
37 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
38 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
39 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
40 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
41 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
44 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
45 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
46 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
47 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
48 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
49 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
50 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
51 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
52 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
53 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
54 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
55 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
56 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
57 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
58 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
59 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
60 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
61 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
62 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
63 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
64 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
67 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
71 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
72 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
73 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
74 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
75 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
76 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
77 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
78 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
79 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
80 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
81 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
82 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
83 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
84 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
85 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
86 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
87 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
88 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
89 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
90 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
91 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
92 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
93 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
94 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
95 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
96 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
97 2896184354 Aurantiacibacter suaedae GH3-15 Isolate Rhizosphere
98 2896253425 Aurantiacibacter rhizosphaerae GH3-10 Isolate Rhizosphere
99 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.08
Metatranscriptomes 0
Isolates 9.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 30.53
Nodule 0.76
Rhizoplane 0
Rhizosphere 51.91
Stem 0
Stem Tuber 0
Unclassified 0.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0163163_10203934 3300014325 Bacteria 2026
2 SwRhRL2b_contig_1862510 2162886007 Bacteria 13374
3 SwRhRL2b_contig_807934 2162886007 Bacteria 13370
4 JGI24751J29686_10001099 3300002459 Bacteria 5840
5 rootH2_10087325 3300003320 Bacteria 3150
6 rootL2_10333287 3300003322 Bacteria 2217
7 Ga0055536_1009029 3300003781 Bacteria 4193
8 Ga0065704_10000191 3300005289 Bacteria 318191
9 Ga0070682_100153273 3300005337 Bacteria 1584
10 Ga0070667_100031553 3300005367 Bacteria 4417
11 Ga0070705_100179659 3300005440 Bacteria 1432
12 Ga0068852_100301079 3300005616 Bacteria 1552
13 Ga0068863_100199583 3300005841 Bacteria 1924
14 Ga0068860_100282633 3300005843 Bacteria 1622
15 Ga0075365_10009004 3300006038 Bacteria 5709
16 Ga0075368_10005604 3300006042 Bacteria 4331
17 Ga0075363_100012912 3300006048 Bacteria 4033
18 Ga0075362_10031400 3300006177 Bacteria 2298
19 Ga0075367_10044640 3300006178 Bacteria 2599
20 Ga0075369_10012485 3300006186 Bacteria 3357
21 Ga0075366_10002205 3300006195 Bacteria 9940
22 Ga0075366_10089928 3300006195 Bacteria 1839
23 Ga0075370_10030544 3300006353 Bacteria 3006
24 Ga0075370_10101274 3300006353 Bacteria 1667
25 Ga0079104_1024336 3300006946 Bacteria 1596
26 Ga0157371_10019598 3300013102 Bacteria 4984
27 Ga0157371_10053065 3300013102 Bacteria 2879
28 Ga0157380_10180567 3300014326 Bacteria 1854
29 Ga0183365_10005 3300015684 Bacteria 249619
30 Ga0209676_1000138 3300025292 Bacteria 178932
31 Ga0209050_1000279 3300025298 Bacteria 109034
32 Ga0209050_1005676 3300025298 Bacteria 7718
33 Ga0209257_1005069 3300025304 Bacteria 9563
34 Ga0207694_10329373 3300025924 Bacteria 1261
35 Ga0207658_10001560 3300025986 Bacteria 17759
36 Ga0207641_10164818 3300026088 Bacteria 2017
37 Ga0209983_1003597 3300027665 Bacteria 3287
38 Ga0209813_10000030 3300027866 Bacteria 65385
39 Ga0209974_10000818 3300027876 Bacteria 10671
40 Ga0268264_10069844 3300028381 Bacteria 2972
41 Ga0268264_10363045 3300028381 Bacteria 1382
42 Ga0316576_10209431 3300031727 Bacteria 1468
43 Ga0307413_10045418 3300031824 Bacteria 2604
44 Ga0307413_10271324 3300031824 Bacteria 1270
45 Ga0307412_10026602 3300031911 Bacteria 3598
46 Ga0307412_10217219 3300031911 Bacteria 1463
47 Ga0307409_100300375 3300031995 Bacteria 1493
48 Ga0307416_100080154 3300032002 Bacteria 2754
49 Ga0307414_10000095 3300032004 Bacteria 67330
50 Ga0307414_10013414 3300032004 Bacteria 4878
51 Ga0307414_10022324 3300032004 Bacteria 3990
52 Ga0307414_10040714 3300032004 Bacteria 3140
53 Ga0307414_10092442 3300032004 Bacteria 2252
54 Ga0307414_10207912 3300032004 Bacteria 1597
55 Ga0307415_100208379 3300032126 Bacteria 1557
56 Ga0495627_001057 3300046453 Bacteria 18252
57 Ga0495638_0056698 3300046460 Bacteria 2431
58 Ga0495650_0003708 3300046471 Bacteria 10938
59 Ga0495596_0000524 3300046500 Bacteria 24059
60 Ga0495596_0001164 3300046500 Bacteria 15422
61 Ga0495607_0009269 3300046501 Bacteria 6680
62 Ga0495607_0022140 3300046501 Bacteria 3995
63 Ga0495606_0100288 3300046507 Bacteria 1764
64 Ga0495610_0000061 3300046512 Bacteria 130986
65 Ga0495610_0000107 3300046512 Bacteria 97076
66 Ga0495610_0013321 3300046512 Bacteria 4892
67 Ga0495620_0035158 3300046515 Bacteria 2256
68 Ga0495632_0001193 3300046519 Bacteria 22074
69 Ga0495632_0030844 3300046519 Bacteria 2778
70 Ga0495643_0004174 3300046522 Bacteria 10254
71 Ga0495643_0065793 3300046522 Bacteria 1913
72 Ga0495654_0010907 3300046530 Bacteria 4938
73 Ga0495609_0002666 3300046538 Bacteria 10813
74 Ga0495625_0014197 3300046660 Bacteria 6370
75 Ga0495671_0048779 3300046692 Bacteria 2112
76 Ga0495681_0000114 3300047470 Bacteria 69843
77 Ga0495615_0000210 3300048090 Bacteria 13513
78 Ga0495615_0002183 3300048090 Bacteria 3090
79 Ga0495626_0001087 3300048091 Bacteria 23122
80 Ga0496116_0000017 3300048919 Bacteria 554463
81 Ga0496118_0064766 3300048921 Bacteria 2680
82 Ga0496121_0006379 3300048924 Bacteria 14685
83 Ga0496122_0025956 3300048925 Bacteria 5071
84 Ga0496122_0034082 3300048925 Bacteria 4173
85 Ga0496123_0003250 3300048926 Bacteria 18462
86 Ga0496124_0004100 3300048927 Bacteria 17230
87 Ga0496124_0009162 3300048927 Bacteria 10225
88 Ga0496125_0062539 3300048928 Bacteria 2975
89 Ga0496125_0194102 3300048928 Bacteria 1337
90 Ga0496126_0010189 3300048929 Bacteria 9889
91 Ga0496126_0157617 3300048929 Bacteria 1942
92 Ga0501033_0181058 3300049570 Bacteria 1511
93 Ga0501034_0041071 3300049571 Bacteria 4680
94 Ga0501034_0177997 3300049571 Unclassified 2092
95 nmdc:mga03683_129_c1 3300050489 Bacteria 25227
96 nmdc:mga00v17_91266_c1 3300050491 Bacteria 1914
97 nmdc:mga0k408_194860_c1 3300050493 Bacteria 1209
98 nmdc:mga0k408_3922_c1 3300050493 Bacteria 7889
99 nmdc:mga0k408_50448_c1 3300050493 Bacteria 2409
100 nmdc:mga06z11_122_c1 3300050494 Bacteria 32025
101 nmdc:mga04h51_231_c1 3300050495 Bacteria 14772
102 nmdc:mga07m45_32_c1 3300050496 Bacteria 78063
103 nmdc:mga07m45_44793_c1 3300050496 Bacteria 2483
104 nmdc:mga0sz30_5603_c1 3300050516 Bacteria 4614
105 Ga0500635_0000882 3300053080 Bacteria 7295
106 Ga0500643_000001 3300053087 Bacteria 1440111
107 Ga0500592_004814 3300053116 Bacteria 2146
108 Ga0500607_000007 3300053121 Bacteria 134097
109 Ga0500607_000721 3300053121 Bacteria 31928
110 Ga0500608_000199 3300053122 Bacteria 23889
111 Ga0500608_109671 3300053122 Bacteria 1267
112 Ga0500559_0001214 3300053136 Bacteria 15283
113 Ga0500559_0086904 3300053136 Bacteria 1427
114 Ga0500568_0008388 3300053139 Bacteria 4982
115 Ga0500616_0001285 3300053153 Bacteria 24966
116 Ga0500627_0000012 3300053158 Bacteria 140613
117 Ga0500645_007855 3300053730 Bacteria 3687
118 Ga0500645_021923 3300053730 Bacteria 1968
119 2511128675 2510917021 Bacteria 5705459
120 2643822154 2643221560 Bacteria 4801179
121 2643833384 2643221563 Bacteria 4726935
122 2643948430 2643221588 Bacteria 3692460
123 2644054311 2643221608 Bacteria 4724829
124 2819550925 2818991438 Bacteria 5793701
125 2848297486 2848297114 Bacteria 3608511
126 2852654675 2852653556 Bacteria 4050083
127 2852682273 2852680915 Bacteria 4100189
128 2895884796 2895880812 Bacteria 11255272
129 2896186672 2896184354 Bacteria 3258548
130 2896254436 2896253425 Bacteria 3418029
131 8054304846 8054302542 Bacteria 5698134
132 Ga0163163_10203934
133 SwRhRL2b_contig_1862510
134 SwRhRL2b_contig_807934
135 JGI24751J29686_10001099
136 rootH2_10087325
137 rootL2_10333287
138 Ga0055536_1009029
139 Ga0065704_10000191
140 Ga0070682_100153273
141 Ga0070667_100031553
142 Ga0070705_100179659
143 Ga0068852_100301079
144 Ga0068863_100199583
145 Ga0068860_100282633
146 Ga0075365_10009004
147 Ga0075368_10005604
148 Ga0075363_100012912
149 Ga0075362_10031400
150 Ga0075367_10044640
151 Ga0075369_10012485
152 Ga0075366_10002205
153 Ga0075366_10089928
154 Ga0075370_10030544
155 Ga0075370_10101274
156 Ga0079104_1024336
157 Ga0157371_10019598
158 Ga0157371_10053065
159 Ga0157380_10180567
160 Ga0183365_10005
161 Ga0209676_1000138
162 Ga0209050_1000279
163 Ga0209050_1005676
164 Ga0209257_1005069
165 Ga0207694_10329373
166 Ga0207658_10001560
167 Ga0207641_10164818
168 Ga0209983_1003597
169 Ga0209813_10000030
170 Ga0209974_10000818
171 Ga0268264_10069844
172 Ga0268264_10363045
173 Ga0316576_10209431
174 Ga0307413_10045418
175 Ga0307413_10271324
176 Ga0307412_10026602
177 Ga0307412_10217219
178 Ga0307409_100300375
179 Ga0307416_100080154
180 Ga0307414_10000095
181 Ga0307414_10013414
182 Ga0307414_10022324
183 Ga0307414_10040714
184 Ga0307414_10092442
185 Ga0307414_10207912
186 Ga0307415_100208379
187 Ga0495627_001057
188 Ga0495638_0056698
189 Ga0495650_0003708
190 Ga0495596_0000524
191 Ga0495596_0001164
192 Ga0495607_0009269
193 Ga0495607_0022140
194 Ga0495606_0100288
195 Ga0495610_0000061
196 Ga0495610_0000107
197 Ga0495610_0013321
198 Ga0495620_0035158
199 Ga0495632_0001193
200 Ga0495632_0030844
201 Ga0495643_0004174
202 Ga0495643_0065793
203 Ga0495654_0010907
204 Ga0495609_0002666
205 Ga0495625_0014197
206 Ga0495671_0048779
207 Ga0495681_0000114
208 Ga0495615_0000210
209 Ga0495615_0002183
210 Ga0495626_0001087
211 Ga0496116_0000017
212 Ga0496118_0064766
213 Ga0496121_0006379
214 Ga0496122_0025956
215 Ga0496122_0034082
216 Ga0496123_0003250
217 Ga0496124_0004100
218 Ga0496124_0009162
219 Ga0496125_0062539
220 Ga0496125_0194102
221 Ga0496126_0010189
222 Ga0496126_0157617
223 Ga0501033_0181058
224 Ga0501034_0041071
225 Ga0501034_0177997
226 nmdc:mga03683_129_c1
227 nmdc:mga00v17_91266_c1
228 nmdc:mga0k408_194860_c1
229 nmdc:mga0k408_3922_c1
230 nmdc:mga0k408_50448_c1
231 nmdc:mga06z11_122_c1
232 nmdc:mga04h51_231_c1
233 nmdc:mga07m45_32_c1
234 nmdc:mga07m45_44793_c1
235 nmdc:mga0sz30_5603_c1
236 Ga0500635_0000882
237 Ga0500643_000001
238 Ga0500592_004814
239 Ga0500607_000007
240 Ga0500607_000721
241 Ga0500608_000199
242 Ga0500608_109671
243 Ga0500559_0001214
244 Ga0500559_0086904
245 Ga0500568_0008388
246 Ga0500616_0001285
247 Ga0500627_0000012
248 Ga0500645_007855
249 Ga0500645_021923
250 2511128675
251 2643822154
252 2643833384
253 2643948430
254 2644054311
255 2819550925
256 2848297486
257 2852654675
258 2852682273
259 2895884796
260 2896186672
261 2896254436
262 8054304846

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02254

TrkA_N

TrkA-N domain

143

261

0.97

PF07885

Ion_trans_2

Ion channel

38

124

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fwz-assembly1.cif.gz_B crystal structure of trka-n domain of inner membrane protein ybal from escherichia coli 0.9146 106 241
3fwz-assembly1.cif.gz_B crystal structure of trka-n domain of inner membrane protein ybal from escherichia coli 0.8957 106 241
3l4b-assembly1.cif.gz_E crystal structure of an octomeric two-subunit trka k+ channel ring gating assembly, tm1088a:tm1088b, from thermotoga maritima 0.8882 109 240
6s7r-assembly2.cif.gz_P non-square conformations of ktra r16a mutant rings with bound adp 0.8829 108 240
3l4b-assembly1.cif.gz_A crystal structure of an octomeric two-subunit trka k+ channel ring gating assembly, tm1088a:tm1088b, from thermotoga maritima 0.8811 107 238
ID Description Score Start End Superfamily
af_O53346_142_281_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9503 104 242 3.40.50.720
af_O53346_142_281_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9371 104 242 3.40.50.720
2oguA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9337 109 227 3.40.50.720
4j91B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9272 109 227 3.40.50.720
4j91B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9197 109 227 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A529PZQ1-F1-model_v4 Potassium transporter 0.9675 110 224 GO:0005886
GO:0006813
GO:0015297
AF-A0A529PZQ1-F1-model_v4 Potassium transporter 0.9429 110 224 GO:0005886
GO:0006813
GO:0015297
AF-A0A6P1B333-F1-model_v4 deleted 0.94 137 227
AF-A0A1Q8CS97-F1-model_v4 RCK N-terminal domain-containing protein 0.9281 113 243 GO:0005886
GO:0006813
AF-A0A2D9CJ92-F1-model_v4 RCK N-terminal domain-containing protein 0.9252 108 240 GO:0005886
GO:0006813

Map