F145756
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 130 | 110 | 260 | 253 |
Family's Representative Sequence
| Representative Sequence | 3300025925|Ga0207650_10195648|Ga0207650_101956481 |
| Length | 270 |
| Sequence | MNLKIIFISFVFAILKQMYFIDTHTHIYLQEFDDDRDSIMQKAQEADVEITIMPAIDSTTHEKMFQVESSYGNCHSMIGLHPCSVDKGFEKELSLVNQFLVERKFVAVGEIGLDFYWDKTFVSEQYEAFHRQIQMAITYRLPIVIHSRNAIDECINVVNKYPGVKGVFHCFSGNEEQAKKIVDLDFMLGIGGVVTFKNAGLDKVIEQIGLSNVILETDAPYLAPVPYRGKRNEPAYIRLVAEKLSAVCNLPLEKIAELTTENARKLFKLQ |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 2 | 3300001915 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 | Metagenome | Rhizosphere |
| 3 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 4 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 5 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 6 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 7 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 8 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 9 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 10 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 14 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 15 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 17 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 19 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 20 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 22 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 23 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 24 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 25 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 26 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 27 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 28 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 38 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 44 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 45 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 46 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 47 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 48 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 49 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 50 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 51 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 52 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 53 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 54 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 55 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 56 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 57 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 58 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 59 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 60 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300046523 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300046528 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 65 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 66 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 67 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 68 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 69 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 70 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 71 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 72 | 3300049514 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought | Metagenome | Rhizosphere |
| 73 | 3300049515 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought | Metagenome | Rhizosphere |
| 74 | 3300049521 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought | Metagenome | Rhizosphere |
| 75 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 77 | 3300049649 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought | Metagenome | Rhizosphere |
| 78 | 3300049651 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought | Metagenome | Rhizosphere |
| 79 | 3300049652 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought | Metagenome | Rhizosphere |
| 80 | 3300049653 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control | Metagenome | Rhizosphere |
| 81 | 3300049654 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control | Metagenome | Rhizosphere |
| 82 | 3300049655 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought | Metagenome | Rhizosphere |
| 83 | 3300049661 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control | Metagenome | Rhizosphere |
| 84 | 3300049663 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought | Metagenome | Rhizosphere |
| 85 | 3300049664 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought | Metagenome | Rhizosphere |
| 86 | 3300049668 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought | Metagenome | Rhizosphere |
| 87 | 3300049669 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought | Metagenome | Rhizosphere |
| 88 | 3300049672 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought | Metagenome | Rhizosphere |
| 89 | 3300049675 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control | Metagenome | Rhizosphere |
| 90 | 3300049681 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought | Metagenome | Rhizosphere |
| 91 | 3300049683 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control | Metagenome | Rhizosphere |
| 92 | 3300049688 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought | Metagenome | Rhizosphere |
| 93 | 3300049690 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought | Metagenome | Rhizosphere |
| 94 | 3300049704 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control | Metagenome | Rhizosphere |
| 95 | 3300049705 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought | Metagenome | Rhizosphere |
| 96 | 3300049707 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought | Metagenome | Rhizosphere |
| 97 | 3300049708 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control | Metagenome | Rhizosphere |
| 98 | 3300049761 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control | Metagenome | Rhizosphere |
| 99 | 3300049765 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought | Metagenome | Rhizosphere |
| 100 | 3300049775 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought | Metagenome | Rhizosphere |
| 101 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 102 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 103 | 3300053129 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere | Metagenome | Endosphere |
| 104 | 3300053146 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere | Metagenome | Endosphere |
| 105 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 106 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 107 | 2837678835 | Jiella endophytica CBS5Q-3 | Isolate | Unclassified |
| 108 | 2964375228 | Anaerobacillus alkaliphilus B16-10 | Isolate | Rhizosphere |
| 109 | 2977254563 | Bacillus sp. SORGH_AS 510 | Isolate | Unclassified |
| 110 | 3001892409 | Neobacillus rhizophilus FJAT-49825 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.15 |
| Metatranscriptomes | 0.77 |
| Isolates | 3.08 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 3.85 |
| Nodule | 0 |
| Rhizoplane | 4.62 |
| Rhizosphere | 80 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.08 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0207650_10195648 | 3300025925 | Bacteria | 1617 |
| 2 | JGI24741J21665_1016939 | 3300001915 | Unclassified | 1183 |
| 3 | rootH1_10001090 | 3300003316 | Bacteria | 40128 |
| 4 | rootH1_10130999 | 3300003316 | Unclassified | 1581 |
| 5 | rootH2_10000284 | 3300003320 | Bacteria | 7968 |
| 6 | rootL2_10067021 | 3300003322 | Bacteria | 2171 |
| 7 | rootL2_10258922 | 3300003322 | Bacteria | 4175 |
| 8 | rootL2_10287087 | 3300003322 | Unclassified | 1429 |
| 9 | rootH1_10000715 | 3300003323 | Bacteria | 71212 |
| 10 | rootH1_10027281 | 3300003323 | Bacteria | 15833 |
| 11 | rootH1_10043770 | 3300003323 | Bacteria | 5593 |
| 12 | Ga0006562J51391_1000026 | 3300003578 | Bacteria | 55240 |
| 13 | Ga0065704_10171306 | 3300005289 | Bacteria | 1276 |
| 14 | Ga0065712_10012352 | 3300005290 | Bacteria | 1774 |
| 15 | Ga0070670_100601882 | 3300005331 | Bacteria | 984 |
| 16 | Ga0070675_100087749 | 3300005354 | Bacteria | 2601 |
| 17 | Ga0070673_100015943 | 3300005364 | Bacteria | 5295 |
| 18 | Ga0070688_100113987 | 3300005365 | Bacteria | 1802 |
| 19 | Ga0070713_100385578 | 3300005436 | Bacteria | 1306 |
| 20 | Ga0070684_100084098 | 3300005535 | Bacteria | 2820 |
| 21 | Ga0068853_100891460 | 3300005539 | Bacteria | 854 |
| 22 | Ga0070672_100043356 | 3300005543 | Bacteria | 3469 |
| 23 | Ga0070672_100049297 | 3300005543 | Bacteria | 3275 |
| 24 | Ga0070704_100550253 | 3300005549 | Bacteria | 1008 |
| 25 | Ga0068855_100141181 | 3300005563 | Bacteria | 2746 |
| 26 | Ga0070664_100355953 | 3300005564 | Bacteria | 1332 |
| 27 | Ga0068856_100094732 | 3300005614 | Bacteria | 2973 |
| 28 | Ga0068852_100052560 | 3300005616 | Bacteria | 3502 |
| 29 | Ga0068851_10104874 | 3300005834 | Bacteria | 1503 |
| 30 | Ga0068863_100046573 | 3300005841 | Bacteria | 4116 |
| 31 | Ga0070716_100163987 | 3300006173 | Bacteria | 1443 |
| 32 | Ga0075428_100017124 | 3300006844 | Bacteria | 8005 |
| 33 | Ga0111539_10017503 | 3300009094 | Bacteria | 8873 |
| 34 | Ga0111539_10062414 | 3300009094 | Bacteria | 4411 |
| 35 | Ga0111539_10685030 | 3300009094 | Viruses | 1193 |
| 36 | Ga0105237_10487697 | 3300009545 | Bacteria | 1239 |
| 37 | Ga0157371_10002671 | 3300013102 | Bacteria | 16870 |
| 38 | Ga0157371_10246131 | 3300013102 | Bacteria | 1287 |
| 39 | Ga0157370_10168284 | 3300013104 | Bacteria | 2038 |
| 40 | Ga0157369_10001051 | 3300013105 | Bacteria | 34842 |
| 41 | Ga0157374_10329948 | 3300013296 | Bacteria | 1513 |
| 42 | Ga0163162_10713214 | 3300013306 | Bacteria | 1124 |
| 43 | Ga0157372_10000009 | 3300013307 | Bacteria | 302051 |
| 44 | Ga0157372_10443271 | 3300013307 | Bacteria | 1513 |
| 45 | Ga0157372_10801415 | 3300013307 | Bacteria | 1094 |
| 46 | Ga0157380_10009014 | 3300014326 | Bacteria | 7126 |
| 47 | Ga0157377_10004170 | 3300014745 | Bacteria | 6605 |
| 48 | Ga0209257_1013079 | 3300025304 | Bacteria | 3740 |
| 49 | Ga0207656_10241328 | 3300025321 | Bacteria | 883 |
| 50 | Ga0207650_10471891 | 3300025925 | Bacteria | 1046 |
| 51 | Ga0207659_10092093 | 3300025926 | Bacteria | 2266 |
| 52 | Ga0207691_10444309 | 3300025940 | Bacteria | 1104 |
| 53 | Ga0207691_10621217 | 3300025940 | Bacteria | 914 |
| 54 | Ga0207679_10356526 | 3300025945 | Bacteria | 1276 |
| 55 | Ga0207702_10598066 | 3300026078 | Bacteria | 1082 |
| 56 | Ga0207428_10152959 | 3300027907 | Unclassified | 1755 |
| 57 | Ga0265327_10017884 | 3300031251 | Bacteria | 4421 |
| 58 | Ga0307509_10007912 | 3300031507 | Bacteria | 13726 |
| 59 | Ga0307405_10102586 | 3300031731 | Bacteria | 1922 |
| 60 | Ga0307410_10004028 | 3300031852 | Bacteria | 7506 |
| 61 | Ga0307410_10219060 | 3300031852 | Bacteria | 1463 |
| 62 | Ga0307412_10032833 | 3300031911 | Bacteria | 3294 |
| 63 | Ga0307409_100043332 | 3300031995 | Bacteria | 3378 |
| 64 | Ga0307409_100393738 | 3300031995 | Bacteria | 1321 |
| 65 | Ga0307416_100029876 | 3300032002 | Bacteria | 4080 |
| 66 | Ga0307416_100571617 | 3300032002 | Bacteria | 1206 |
| 67 | Ga0307415_100272333 | 3300032126 | Bacteria | 1388 |
| 68 | Ga0316574_0004587 | 3300035398 | Archaea | 7259 |
| 69 | Ga0395899_0000327 | 3300037312 | Bacteria | 60343 |
| 70 | Ga0395905_0001296 | 3300037471 | Bacteria | 30740 |
| 71 | Ga0395901_0050723 | 3300038443 | Bacteria | 4310 |
| 72 | Ga0453683_0001221 | 3300044673 | Bacteria | 23047 |
| 73 | Ga0466966_0011694 | 3300044684 | Bacteria | 5817 |
| 74 | Ga0466959_0006644 | 3300045049 | Bacteria | 8036 |
| 75 | Ga0451576_0004777 | 3300045051 | Bacteria | 17367 |
| 76 | Ga0495638_0000006 | 3300046460 | Bacteria | 668846 |
| 77 | Ga0495605_0235781 | 3300046474 | Bacteria | 787 |
| 78 | Ga0495644_0077624 | 3300046523 | Bacteria | 1251 |
| 79 | Ga0495642_0217724 | 3300046528 | Bacteria | 833 |
| 80 | Ga0495622_0270864 | 3300046557 | Bacteria | 744 |
| 81 | Ga0495625_0106017 | 3300046660 | Bacteria | 1925 |
| 82 | Ga0496101_0524656 | 3300048904 | Bacteria | 936 |
| 83 | Ga0496102_0701068 | 3300048905 | Bacteria | 935 |
| 84 | Ga0496104_0104303 | 3300048907 | Bacteria | 2717 |
| 85 | Ga0496112_0081696 | 3300048915 | Bacteria | 3196 |
| 86 | Ga0496113_0076613 | 3300048916 | Bacteria | 2555 |
| 87 | Ga0496113_0696572 | 3300048916 | Bacteria | 811 |
| 88 | Ga0496125_0002022 | 3300048928 | Bacteria | 27473 |
| 89 | Ga0496125_0103158 | 3300048928 | Bacteria | 2093 |
| 90 | Ga0501291_004447 | 3300049514 | Bacteria | 1791 |
| 91 | Ga0501292_003934 | 3300049515 | Bacteria | 2008 |
| 92 | Ga0501298_006427 | 3300049521 | Bacteria | 1921 |
| 93 | Ga0501034_0028533 | 3300049571 | Bacteria | 5680 |
| 94 | Ga0501043_0068939 | 3300049579 | Bacteria | 2778 |
| 95 | Ga0501198_000382 | 3300049649 | Bacteria | 5552 |
| 96 | Ga0501201_000028 | 3300049651 | Bacteria | 9325 |
| 97 | Ga0501202_002778 | 3300049652 | Bacteria | 2964 |
| 98 | Ga0501206_001124 | 3300049653 | Bacteria | 3329 |
| 99 | Ga0501207_000875 | 3300049654 | Bacteria | 3606 |
| 100 | Ga0501208_017428 | 3300049655 | Bacteria | 1132 |
| 101 | Ga0501217_003084 | 3300049661 | Bacteria | 3336 |
| 102 | Ga0501223_002151 | 3300049663 | Bacteria | 4416 |
| 103 | Ga0501224_001241 | 3300049664 | Bacteria | 3357 |
| 104 | Ga0501233_000324 | 3300049668 | Bacteria | 7376 |
| 105 | Ga0501235_002053 | 3300049669 | Bacteria | 4321 |
| 106 | Ga0501239_013111 | 3300049672 | Bacteria | 945 |
| 107 | Ga0501243_003819 | 3300049675 | Bacteria | 2248 |
| 108 | Ga0501251_005611 | 3300049681 | Bacteria | 1337 |
| 109 | Ga0501253_011076 | 3300049683 | Bacteria | 1376 |
| 110 | Ga0501259_002017 | 3300049688 | Bacteria | 3351 |
| 111 | Ga0501261_000246 | 3300049690 | Bacteria | 7454 |
| 112 | Ga0501221_003082 | 3300049704 | Bacteria | 2743 |
| 113 | Ga0501225_0004675 | 3300049705 | Bacteria | 4060 |
| 114 | Ga0501234_007105 | 3300049707 | Bacteria | 1752 |
| 115 | Ga0501245_000741 | 3300049708 | Bacteria | 4048 |
| 116 | Ga0501264_004928 | 3300049761 | Bacteria | 1211 |
| 117 | Ga0501268_030936 | 3300049765 | Bacteria | 968 |
| 118 | Ga0501279_005842 | 3300049775 | Bacteria | 1619 |
| 119 | nmdc:mga06r32_114062_c1 | 3300050510 | Bacteria | 2660 |
| 120 | nmdc:mga08y16_22311_c1 | 3300050511 | Bacteria | 6680 |
| 121 | nmdc:mga08y16_42394_c1 | 3300050511 | Bacteria | 4767 |
| 122 | nmdc:mga08y16_637525_c1 | 3300050511 | Viruses | 1071 |
| 123 | Ga0500628_017304 | 3300053129 | Bacteria | 1406 |
| 124 | Ga0500588_0105751 | 3300053146 | Bacteria | 976 |
| 125 | Ga0500604_0003996 | 3300053151 | Bacteria | 3938 |
| 126 | Ga0500616_0000044 | 3300053153 | Bacteria | 339611 |
| 127 | 2837679979 | 2837678835 | Bacteria | 5252418 |
| 128 | 2964376595 | 2964375228 | Bacteria | 4909004 |
| 129 | 2977254792 | 2977254563 | Bacteria | 4828420 |
| 130 | 3001894120 | 3001892409 | Bacteria | 6328293 |
| 131 | Ga0207650_10195648 | |||
| 132 | JGI24741J21665_1016939 | |||
| 133 | rootH1_10001090 | |||
| 134 | rootH1_10130999 | |||
| 135 | rootH2_10000284 | |||
| 136 | rootL2_10067021 | |||
| 137 | rootL2_10258922 | |||
| 138 | rootL2_10287087 | |||
| 139 | rootH1_10000715 | |||
| 140 | rootH1_10027281 | |||
| 141 | rootH1_10043770 | |||
| 142 | Ga0006562J51391_1000026 | |||
| 143 | Ga0065704_10171306 | |||
| 144 | Ga0065712_10012352 | |||
| 145 | Ga0070670_100601882 | |||
| 146 | Ga0070675_100087749 | |||
| 147 | Ga0070673_100015943 | |||
| 148 | Ga0070688_100113987 | |||
| 149 | Ga0070713_100385578 | |||
| 150 | Ga0070684_100084098 | |||
| 151 | Ga0068853_100891460 | |||
| 152 | Ga0070672_100043356 | |||
| 153 | Ga0070672_100049297 | |||
| 154 | Ga0070704_100550253 | |||
| 155 | Ga0068855_100141181 | |||
| 156 | Ga0070664_100355953 | |||
| 157 | Ga0068856_100094732 | |||
| 158 | Ga0068852_100052560 | |||
| 159 | Ga0068851_10104874 | |||
| 160 | Ga0068863_100046573 | |||
| 161 | Ga0070716_100163987 | |||
| 162 | Ga0075428_100017124 | |||
| 163 | Ga0111539_10017503 | |||
| 164 | Ga0111539_10062414 | |||
| 165 | Ga0111539_10685030 | |||
| 166 | Ga0105237_10487697 | |||
| 167 | Ga0157371_10002671 | |||
| 168 | Ga0157371_10246131 | |||
| 169 | Ga0157370_10168284 | |||
| 170 | Ga0157369_10001051 | |||
| 171 | Ga0157374_10329948 | |||
| 172 | Ga0163162_10713214 | |||
| 173 | Ga0157372_10000009 | |||
| 174 | Ga0157372_10443271 | |||
| 175 | Ga0157372_10801415 | |||
| 176 | Ga0157380_10009014 | |||
| 177 | Ga0157377_10004170 | |||
| 178 | Ga0209257_1013079 | |||
| 179 | Ga0207656_10241328 | |||
| 180 | Ga0207650_10471891 | |||
| 181 | Ga0207659_10092093 | |||
| 182 | Ga0207691_10444309 | |||
| 183 | Ga0207691_10621217 | |||
| 184 | Ga0207679_10356526 | |||
| 185 | Ga0207702_10598066 | |||
| 186 | Ga0207428_10152959 | |||
| 187 | Ga0265327_10017884 | |||
| 188 | Ga0307509_10007912 | |||
| 189 | Ga0307405_10102586 | |||
| 190 | Ga0307410_10004028 | |||
| 191 | Ga0307410_10219060 | |||
| 192 | Ga0307412_10032833 | |||
| 193 | Ga0307409_100043332 | |||
| 194 | Ga0307409_100393738 | |||
| 195 | Ga0307416_100029876 | |||
| 196 | Ga0307416_100571617 | |||
| 197 | Ga0307415_100272333 | |||
| 198 | Ga0316574_0004587 | |||
| 199 | Ga0395899_0000327 | |||
| 200 | Ga0395905_0001296 | |||
| 201 | Ga0395901_0050723 | |||
| 202 | Ga0453683_0001221 | |||
| 203 | Ga0466966_0011694 | |||
| 204 | Ga0466959_0006644 | |||
| 205 | Ga0451576_0004777 | |||
| 206 | Ga0495638_0000006 | |||
| 207 | Ga0495605_0235781 | |||
| 208 | Ga0495644_0077624 | |||
| 209 | Ga0495642_0217724 | |||
| 210 | Ga0495622_0270864 | |||
| 211 | Ga0495625_0106017 | |||
| 212 | Ga0496101_0524656 | |||
| 213 | Ga0496102_0701068 | |||
| 214 | Ga0496104_0104303 | |||
| 215 | Ga0496112_0081696 | |||
| 216 | Ga0496113_0076613 | |||
| 217 | Ga0496113_0696572 | |||
| 218 | Ga0496125_0002022 | |||
| 219 | Ga0496125_0103158 | |||
| 220 | Ga0501291_004447 | |||
| 221 | Ga0501292_003934 | |||
| 222 | Ga0501298_006427 | |||
| 223 | Ga0501034_0028533 | |||
| 224 | Ga0501043_0068939 | |||
| 225 | Ga0501198_000382 | |||
| 226 | Ga0501201_000028 | |||
| 227 | Ga0501202_002778 | |||
| 228 | Ga0501206_001124 | |||
| 229 | Ga0501207_000875 | |||
| 230 | Ga0501208_017428 | |||
| 231 | Ga0501217_003084 | |||
| 232 | Ga0501223_002151 | |||
| 233 | Ga0501224_001241 | |||
| 234 | Ga0501233_000324 | |||
| 235 | Ga0501235_002053 | |||
| 236 | Ga0501239_013111 | |||
| 237 | Ga0501243_003819 | |||
| 238 | Ga0501251_005611 | |||
| 239 | Ga0501253_011076 | |||
| 240 | Ga0501259_002017 | |||
| 241 | Ga0501261_000246 | |||
| 242 | Ga0501221_003082 | |||
| 243 | Ga0501225_0004675 | |||
| 244 | Ga0501234_007105 | |||
| 245 | Ga0501245_000741 | |||
| 246 | Ga0501264_004928 | |||
| 247 | Ga0501268_030936 | |||
| 248 | Ga0501279_005842 | |||
| 249 | nmdc:mga06r32_114062_c1 | |||
| 250 | nmdc:mga08y16_22311_c1 | |||
| 251 | nmdc:mga08y16_42394_c1 | |||
| 252 | nmdc:mga08y16_637525_c1 | |||
| 253 | Ga0500628_017304 | |||
| 254 | Ga0500588_0105751 | |||
| 255 | Ga0500604_0003996 | |||
| 256 | Ga0500616_0000044 | |||
| 257 | 2837679979 | |||
| 258 | 2964376595 | |||
| 259 | 2977254792 | |||
| 260 | 3001894120 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2gzx-assembly2.cif.gz_B | crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. | 0.945 | 2 | 231 |
| 1yix-assembly2.cif.gz_B | crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution | 0.9367 | 2 | 232 |
| 1zzm-assembly1.cif.gz_A | crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution | 0.9298 | 2 | 233 |
| 2gzx-assembly2.cif.gz_B | crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. | 0.9294 | 2 | 231 |
| 1j6o-assembly1.cif.gz_A | crystal structure of tatd-related deoxyribonuclease (tm0667) from thermotoga maritima at 1.8 a resolution | 0.9261 | 2 | 231 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2gzxB00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9389 | 2 | 231 | 3.20.20.140 |
| af_P0AFQ7_2_265_3.20.20.140 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9375 | 2 | 232 | 3.20.20.140 |
| af_P39408_1_259_3.20.20.140 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9338 | 2 | 232 | 3.20.20.140 |
| 1j6oA00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9261 | 2 | 231 | 3.20.20.140 |
| af_P39408_1_259_3.20.20.140 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases | 0.9223 | 2 | 232 | 3.20.20.140 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A4U1C0V1-F1-model_v4 | TatD family deoxyribonuclease | 0.9875 | 2 | 233 |
GO:0004536
GO:0005829 GO:0046872 |
| AF-A0A4V1KHP6-F1-model_v4 | TatD family deoxyribonuclease | 0.9858 | 2 | 233 |
GO:0004536
GO:0005829 GO:0046872 |
| AF-A0A4Q3T487-F1-model_v4 | deleted | 0.9853 | 1 | 125 |
|
| AF-A0A7Y0NRB4-F1-model_v4 | TatD DNase family protein (EC 3.1.21.-) | 0.9852 | 1 | 233 |
GO:0004536
GO:0005829 GO:0046872 |
| AF-A0A437ML21-F1-model_v4 | TatD family deoxyribonuclease | 0.9849 | 2 | 233 |
GO:0004536
GO:0005829 GO:0046872 |