F142728

General Info

Members Datasets Scaffolds Average Seq Length
129 26 258 416

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0006660|Ga0451577_0006660_3710_5032
Length 440
Sequence MKLTAPKGMRLHIGFFGRRNVGKSSLVNAITRQQVSIVSEVAGTTTDPVEKPMELLPLGPVLLIDTAGIDDEGALGEMRIARTRQVFDRADMAVIVAEAPAWGAFEESLLAEFRERKTPLIVALNKSDRGPADPGLLARLAALHLRVVEASALKSTGIHELRHALLETAPADKIESPALIGDLVGPGQMAILVVPIDKEAPKGRLILPQVQAIRDLLDSDALCMVVKERELRAALDRLREPPKLVVTDSQAFLKVAADVPATVPLTSFSILMSRFKGDLCAQVRGAMAIDRLRSGDRVLVAEACSHHPIGEDIGRVKIPRWLTQYVGGKLHFEHVQGHDFPTDLASYQLVVHCGACMWNRREMLNRVLRCHQAGVPVTNYGLTIAYSLGIFERALGPFPAALAIWQEEIRKDGPVLPHPPARRYPANPAPAGARLERSAT

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
4 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
5 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
6 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
7 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
8 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
9 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
10 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
11 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
12 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
13 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
14 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
15 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
16 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
17 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
18 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
19 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
20 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
21 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
22 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
23 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
24 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
25 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
26 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 99.22
Stem 0
Stem Tuber 0
Unclassified 3.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0006660 3300042876 Bacteria 11470
2 rootH2_10142080 3300003320 Bacteria 7834
3 Ga0265326_10013231 3300028558 Bacteria 2416
4 Ga0265318_10046445 3300028577 Bacteria 1639
5 Ga0265323_10002778 3300028653 Bacteria 7880
6 Ga0265323_10014435 3300028653 Bacteria 3129
7 Ga0265323_10019962 3300028653 Bacteria 2584
8 Ga0265322_10003303 3300028654 Bacteria 4887
9 Ga0265336_10002566 3300028666 Bacteria 7428
10 Ga0265338_10000815 3300028800 Bacteria 52466
11 Ga0265338_10002196 3300028800 Bacteria 29896
12 Ga0265338_10002321 3300028800 Bacteria 28802
13 Ga0265338_10003004 3300028800 Bacteria 24392
14 Ga0265338_10026888 3300028800 Bacteria 5790
15 Ga0265338_10030825 3300028800 Bacteria 5271
16 Ga0265338_10039924 3300028800 Bacteria 4417
17 Ga0265338_10044557 3300028800 Bacteria 4094
18 Ga0265338_10062984 3300028800 Bacteria 3237
19 Ga0265338_10090877 3300028800 Bacteria 2525
20 Ga0265324_10000082 3300029957 Bacteria 75154
21 Ga0265324_10000808 3300029957 Bacteria 20387
22 Ga0265324_10008170 3300029957 Bacteria 4180
23 Ga0265324_10021063 3300029957 Bacteria 2339
24 Ga0265324_10026924 3300029957 Bacteria 2033
25 Ga0265330_10000494 3300031235 Bacteria 26322
26 Ga0265330_10001195 3300031235 Bacteria 15396
27 Ga0265330_10001629 3300031235 Bacteria 12796
28 Ga0265330_10001912 3300031235 Bacteria 11585
29 Ga0265330_10082044 3300031235 Bacteria 1389
30 Ga0265332_10002770 3300031238 Bacteria 8729
31 Ga0265332_10025879 3300031238 Bacteria 2575
32 Ga0265332_10031991 3300031238 Unclassified 2294
33 Ga0265320_10001621 3300031240 Bacteria 16093
34 Ga0265320_10031489 3300031240 Bacteria 2723
35 Ga0265320_10066423 3300031240 Bacteria 1709
36 Ga0265325_10004891 3300031241 Bacteria 8370
37 Ga0265325_10016139 3300031241 Bacteria 4179
38 Ga0265329_10000146 3300031242 Bacteria 34447
39 Ga0265329_10005044 3300031242 Bacteria 5390
40 Ga0265340_10000472 3300031247 Bacteria 21795
41 Ga0265339_10000006 3300031249 Bacteria 259593
42 Ga0265339_10008627 3300031249 Bacteria 6471
43 Ga0265339_10010892 3300031249 Bacteria 5622
44 Ga0265339_10095940 3300031249 Unclassified 1548
45 Ga0265316_10000010 3300031344 Bacteria 230553
46 Ga0265316_10000444 3300031344 Bacteria 47104
47 Ga0265316_10000780 3300031344 Bacteria 35146
48 Ga0265316_10001726 3300031344 Bacteria 23184
49 Ga0265316_10005035 3300031344 Bacteria 12967
50 Ga0265316_10013080 3300031344 Bacteria 7401
51 Ga0265316_10016311 3300031344 Bacteria 6449
52 Ga0265316_10033255 3300031344 Bacteria 4201
53 Ga0265316_10034451 3300031344 Bacteria 4112
54 Ga0265316_10071003 3300031344 Bacteria 2685
55 Ga0265316_10093580 3300031344 Bacteria 2290
56 Ga0265316_10096599 3300031344 Unclassified 2250
57 Ga0265313_10003451 3300031595 Bacteria 12791
58 Ga0316575_10006442 3300031665 Bacteria 4222
59 Ga0316575_10006737 3300031665 Unclassified 4147
60 Ga0265314_10000040 3300031711 Bacteria 218764
61 Ga0265314_10006298 3300031711 Bacteria 10522
62 Ga0265314_10011956 3300031711 Bacteria 7119
63 Ga0265314_10015385 3300031711 Bacteria 6073
64 Ga0265314_10072878 3300031711 Bacteria 2292
65 Ga0265342_10000501 3300031712 Bacteria 41927
66 Ga0265342_10000534 3300031712 Bacteria 40495
67 Ga0265342_10002176 3300031712 Bacteria 17232
68 Ga0265342_10004194 3300031712 Bacteria 11469
69 Ga0265342_10015207 3300031712 Bacteria 5072
70 Ga0265342_10022326 3300031712 Bacteria 4025
71 Ga0265342_10028298 3300031712 Bacteria 3494
72 Ga0316576_10008899 3300031727 Bacteria 6446
73 Ga0316576_10091231 3300031727 Bacteria 2270
74 Ga0316576_10091709 3300031727 Bacteria 2264
75 Ga0316576_10127687 3300031727 Bacteria 1912
76 Ga0316582_0015810 3300036647 Bacteria 4326
77 Ga0451577_0000064 3300042876 Bacteria 262482
78 Ga0451577_0001865 3300042876 Bacteria 26861
79 Ga0451577_0007819 3300042876 Bacteria 10462
80 Ga0451577_0019327 3300042876 Bacteria 6265
81 Ga0451577_0020020 3300042876 Bacteria 6145
82 Ga0451577_0020298 3300042876 Bacteria 6100
83 Ga0451577_0020980 3300042876 Bacteria 5988
84 Ga0451577_0028004 3300042876 Bacteria 5098
85 Ga0451577_0112191 3300042876 Bacteria 2440
86 Ga0451577_0179352 3300042876 Unclassified 1909
87 Ga0453683_0000010 3300044673 Bacteria 470890
88 Ga0453683_0000506 3300044673 Bacteria 44224
89 Ga0453683_0000886 3300044673 Bacteria 28760
90 Ga0453683_0041096 3300044673 Bacteria 2903
91 Ga0453683_0107403 3300044673 Bacteria 1754
92 Ga0453683_0130673 3300044673 Bacteria 1582
93 Ga0453683_0143634 3300044673 Bacteria 1507
94 Ga0453684_0000026 3300044712 Bacteria 792958
95 Ga0453684_0000061 3300044712 Bacteria 489946
96 Ga0453684_0000078 3300044712 Bacteria 428794
97 Ga0453684_0000202 3300044712 Bacteria 261894
98 Ga0453684_0000547 3300044712 Bacteria 142253
99 Ga0453684_0001117 3300044712 Bacteria 84116
100 Ga0453684_0001629 3300044712 Bacteria 61225
101 Ga0453684_0002438 3300044712 Bacteria 45206
102 Ga0453684_0002606 3300044712 Bacteria 43111
103 Ga0453684_0005268 3300044712 Bacteria 25857
104 Ga0453684_0007739 3300044712 Bacteria 19618
105 Ga0453684_0007942 3300044712 Bacteria 19242
106 Ga0453684_0008084 3300044712 Bacteria 19017
107 Ga0453684_0011679 3300044712 Bacteria 14655
108 Ga0453684_0012992 3300044712 Bacteria 13615
109 Ga0453684_0020786 3300044712 Bacteria 9866
110 Ga0453684_0021566 3300044712 Bacteria 9615
111 Ga0453684_0025038 3300044712 Bacteria 8684
112 Ga0453684_0036783 3300044712 Bacteria 6738
113 Ga0453684_0049830 3300044712 Bacteria 5516
114 Ga0453684_0119012 3300044712 Bacteria 3193
115 Ga0453684_0153094 3300044712 Bacteria 2737
116 Ga0453684_0189224 3300044712 Bacteria 2409
117 Ga0453684_0214740 3300044712 Bacteria 2233
118 Ga0453684_0238577 3300044712 Bacteria 2094
119 Ga0453684_0251380 3300044712 Bacteria 2030
120 Ga0453684_0499932 3300044712 Bacteria 1346
121 Ga0453684_0500661 3300044712 Bacteria 1345
122 Ga0451576_0000050 3300045051 Bacteria 315118
123 Ga0451576_0000181 3300045051 Bacteria 158861
124 Ga0451576_0000275 3300045051 Bacteria 126175
125 Ga0451576_0000583 3300045051 Bacteria 77369
126 Ga0451576_0000669 3300045051 Bacteria 70405
127 Ga0451576_0027794 3300045051 Bacteria 6071
128 Ga0451576_0080988 3300045051 Bacteria 3377
129 Ga0451576_0374139 3300045051 Bacteria 1493
130 Ga0451577_0006660
131 rootH2_10142080
132 Ga0265326_10013231
133 Ga0265318_10046445
134 Ga0265323_10002778
135 Ga0265323_10014435
136 Ga0265323_10019962
137 Ga0265322_10003303
138 Ga0265336_10002566
139 Ga0265338_10000815
140 Ga0265338_10002196
141 Ga0265338_10002321
142 Ga0265338_10003004
143 Ga0265338_10026888
144 Ga0265338_10030825
145 Ga0265338_10039924
146 Ga0265338_10044557
147 Ga0265338_10062984
148 Ga0265338_10090877
149 Ga0265324_10000082
150 Ga0265324_10000808
151 Ga0265324_10008170
152 Ga0265324_10021063
153 Ga0265324_10026924
154 Ga0265330_10000494
155 Ga0265330_10001195
156 Ga0265330_10001629
157 Ga0265330_10001912
158 Ga0265330_10082044
159 Ga0265332_10002770
160 Ga0265332_10025879
161 Ga0265332_10031991
162 Ga0265320_10001621
163 Ga0265320_10031489
164 Ga0265320_10066423
165 Ga0265325_10004891
166 Ga0265325_10016139
167 Ga0265329_10000146
168 Ga0265329_10005044
169 Ga0265340_10000472
170 Ga0265339_10000006
171 Ga0265339_10008627
172 Ga0265339_10010892
173 Ga0265339_10095940
174 Ga0265316_10000010
175 Ga0265316_10000444
176 Ga0265316_10000780
177 Ga0265316_10001726
178 Ga0265316_10005035
179 Ga0265316_10013080
180 Ga0265316_10016311
181 Ga0265316_10033255
182 Ga0265316_10034451
183 Ga0265316_10071003
184 Ga0265316_10093580
185 Ga0265316_10096599
186 Ga0265313_10003451
187 Ga0316575_10006442
188 Ga0316575_10006737
189 Ga0265314_10000040
190 Ga0265314_10006298
191 Ga0265314_10011956
192 Ga0265314_10015385
193 Ga0265314_10072878
194 Ga0265342_10000501
195 Ga0265342_10000534
196 Ga0265342_10002176
197 Ga0265342_10004194
198 Ga0265342_10015207
199 Ga0265342_10022326
200 Ga0265342_10028298
201 Ga0316576_10008899
202 Ga0316576_10091231
203 Ga0316576_10091709
204 Ga0316576_10127687
205 Ga0316582_0015810
206 Ga0451577_0000064
207 Ga0451577_0001865
208 Ga0451577_0007819
209 Ga0451577_0019327
210 Ga0451577_0020020
211 Ga0451577_0020298
212 Ga0451577_0020980
213 Ga0451577_0028004
214 Ga0451577_0112191
215 Ga0451577_0179352
216 Ga0453683_0000010
217 Ga0453683_0000506
218 Ga0453683_0000886
219 Ga0453683_0041096
220 Ga0453683_0107403
221 Ga0453683_0130673
222 Ga0453683_0143634
223 Ga0453684_0000026
224 Ga0453684_0000061
225 Ga0453684_0000078
226 Ga0453684_0000202
227 Ga0453684_0000547
228 Ga0453684_0001117
229 Ga0453684_0001629
230 Ga0453684_0002438
231 Ga0453684_0002606
232 Ga0453684_0005268
233 Ga0453684_0007739
234 Ga0453684_0007942
235 Ga0453684_0008084
236 Ga0453684_0011679
237 Ga0453684_0012992
238 Ga0453684_0020786
239 Ga0453684_0021566
240 Ga0453684_0025038
241 Ga0453684_0036783
242 Ga0453684_0049830
243 Ga0453684_0119012
244 Ga0453684_0153094
245 Ga0453684_0189224
246 Ga0453684_0214740
247 Ga0453684_0238577
248 Ga0453684_0251380
249 Ga0453684_0499932
250 Ga0453684_0500661
251 Ga0451576_0000050
252 Ga0451576_0000181
253 Ga0451576_0000275
254 Ga0451576_0000583
255 Ga0451576_0000669
256 Ga0451576_0027794
257 Ga0451576_0080988
258 Ga0451576_0374139

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF18128

HydF_dimer

Hydrogen maturase F dimerization domain

179

277

0.99

PF18133

HydF_tetramer

Hydrogen maturase F tetramerization domain

281

397

0.98

PF01926

MMR_HSR1

50S ribosome-binding GTPase

12

126

0.88

PF02421

FeoB_N

Ferrous iron transport protein B

11

165

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7zw6-assembly1.cif.gz_A oligomeric structure of syndlp 0.8695 9 39
2gja-assembly1.cif.gz_A structure of the mnme g-domain in complex with gdp*alf4-, mg2+ and nh4+ 0.7874 9 132
7of2-assembly1.cif.gz_C structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with gtpbp6. 0.7834 8 134
8a57-assembly1.cif.gz_D cryo-em structure of hflxr bound to the listeria monocytogenes 50s ribosomal subunit. 0.7354 9 137
3pqc-assembly1.cif.gz_A crystal structure of thermotoga maritima ribosome biogenesis gtp-binding protein engb (ysxc/yiha) in complex with gdp 0.7086 3 134
ID Description Score Start End Superfamily
5ladA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8538 255 363 3.40.50.11410
5ladA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8491 147 252 3.40.50.11420
5ladA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8464 255 363 3.40.50.11410
5ladA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8212 147 252 3.40.50.11420
af_Q20446_235_404_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7798 11 134 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7X6NQE5-F1-model_v4 deleted 0.9742 173 363
AF-A0A3D0NRM7-F1-model_v4 [FeFe] hydrogenase H-cluster maturation GTPase HydF 0.9697 156 361
AF-A0A1W9UJJ4-F1-model_v4 [FeFe] hydrogenase H-cluster maturation GTPase HydF 0.9684 145 364
AF-A0A3N5IU26-F1-model_v4 GTP-binding protein 0.9684 1 96 GO:0002098
GO:0005525
GO:0005737
GO:0030488
AF-A0A7U9T062-F1-model_v4 Hydrogen maturase F tetramerization domain-containing protein 0.9678 248 363

Map