F142530

General Info

Members Datasets Scaffolds Average Seq Length
129 91 258 526

Family's Representative Sequence

Representative Sequence 3300035724|Ga0373933_0054058|Ga0373933_0054058_236_2017
Length 578
Sequence VHAPWLHRASIAGERTTFSAPLETTIMQNRFSRRKLLTGAAALAIPGIRGGRMPGAAPAPRVGGLIFEEVPPSASGITWVHENAISPERYLPETLGPGCAFFDYDNDGWMDLYLVNSGPSDFYKPAKPLRNALYKNNRDGTFTDVTEKAGVGAGTTFGMGVAVGDYDNDGYPDLFVTAYGRCILYHNNGNGTFTDVTDKAGLGLPGWTTSAVWFVDYSSKLSCGDNKLGRHYYCIPRVFKPTHSFLFHNNGDGTFTDVTRGTDIERALGKGLGVVATDINNDGLMDLFVANDTVQNFLFVNRGKGKWEEIALAAEVGFSENGQARSGMGVDAADVNADGWEDLFVANVDQEMFSLYTNNKNESFSDAAHKNGVAQATRLLSGWGLKFFDYDNDGSIDLILSNGHPDDMIEQYSQQVKYKEPLLLFRQEKGLLRNMSSEAGPVFTKALAARGLTIGDFDNDGFPDVLVATNGGAPVLLRNRCGSGNHWLGLKLEGVNCNRDAIGARISWSAGGVKKTKLKNNGGSYLSSHDPRELLGLGANTKLDWLEVKWPQPSGKVQKFTDVAVDRYVTLVEGKGLA

Samples

Sample ID Description Type Environment
1 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
58 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
67 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
70 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
71 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
72 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
73 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
74 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
79 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
82 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
83 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
84 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
85 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
86 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
87 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
88 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
89 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
90 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
91 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.55
Rhizosphere 92.25
Stem 0
Stem Tuber 0
Unclassified 3.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373933_0054058 3300035724 Bacteria 2406
2 Ga0065714_10069624 3300005288 Bacteria 4152
3 Ga0070683_100000035 3300005329 Bacteria 122362
4 Ga0070683_100016899 3300005329 Bacteria 6438
5 Ga0070668_100070682 3300005347 Bacteria 2718
6 Ga0070669_100009288 3300005353 Bacteria 7001
7 Ga0070714_100003786 3300005435 Bacteria 11350
8 Ga0070713_100002686 3300005436 Bacteria 11602
9 Ga0070713_100035877 3300005436 Bacteria 3996
10 Ga0070711_100019685 3300005439 Bacteria 4334
11 Ga0070711_100022635 3300005439 Bacteria 4076
12 Ga0070708_100000501 3300005445 Bacteria 29429
13 Ga0070699_100099902 3300005518 Bacteria 2543
14 Ga0070684_100000037 3300005535 Bacteria 95058
15 Ga0070684_100105907 3300005535 Bacteria 2517
16 Ga0070697_100101540 3300005536 Bacteria 2390
17 Ga0068853_100070392 3300005539 Bacteria 3045
18 Ga0070665_100000573 3300005548 Bacteria 51436
19 Ga0070665_100179763 3300005548 Bacteria 2116
20 Ga0068855_100077547 3300005563 Bacteria 3855
21 Ga0068856_100193008 3300005614 Bacteria 2050
22 Ga0068852_100005751 3300005616 Bacteria 8901
23 Ga0081455_10010457 3300005937 Bacteria 9413
24 Ga0070717_10051466 3300006028 Bacteria 3390
25 Ga0075428_100000995 3300006844 Bacteria 29993
26 Ga0075428_100004376 3300006844 Bacteria 15590
27 Ga0075430_100001021 3300006846 Bacteria 22153
28 Ga0075431_100001337 3300006847 Bacteria 22537
29 Ga0075431_100032323 3300006847 Bacteria 5392
30 Ga0075431_100033125 3300006847 Bacteria 5326
31 Ga0075433_10039886 3300006852 Bacteria 4062
32 Ga0075433_10048606 3300006852 Bacteria 3689
33 Ga0075434_100075122 3300006871 Bacteria 3373
34 Ga0075429_100000273 3300006880 Bacteria 36203
35 Ga0105240_10000772 3300009093 Bacteria 58085
36 Ga0105240_10002280 3300009093 Bacteria 31085
37 Ga0105240_10003935 3300009093 Bacteria 22949
38 Ga0111539_10000201 3300009094 Bacteria 70327
39 Ga0111539_10019890 3300009094 Bacteria 8272
40 Ga0111539_10052928 3300009094 Bacteria 4832
41 Ga0105247_10113373 3300009101 Unclassified 1747
42 Ga0114129_10000751 3300009147 Bacteria 41232
43 Ga0114129_10009299 3300009147 Bacteria 14016
44 Ga0114129_10226570 3300009147 Bacteria 2519
45 Ga0105237_10001560 3300009545 Bacteria 29883
46 Ga0105237_10021126 3300009545 Bacteria 6696
47 Ga0105249_10018949 3300009553 Bacteria 6134
48 Ga0157370_10008591 3300013104 Bacteria 10998
49 Ga0157370_10046892 3300013104 Bacteria 4143
50 Ga0157369_10003065 3300013105 Bacteria 19959
51 Ga0157374_10003653 3300013296 Bacteria 12939
52 Ga0157374_10014603 3300013296 Bacteria 6875
53 Ga0157372_10101204 3300013307 Unclassified 3289
54 Ga0157380_10008014 3300014326 Bacteria 7524
55 Ga0157379_10036714 3300014968 Bacteria 4369
56 Ga0163161_10020017 3300017792 Bacteria 4693
57 Ga0213876_10019554 3300021384 Bacteria 3578
58 Ga0207695_10003418 3300025913 Bacteria 22408
59 Ga0207695_10003560 3300025913 Bacteria 21819
60 Ga0207695_10006097 3300025913 Bacteria 15729
61 Ga0207695_10115931 3300025913 Bacteria 2653
62 Ga0207671_10007080 3300025914 Bacteria 9811
63 Ga0207671_10072524 3300025914 Unclassified 2570
64 Ga0207693_10022543 3300025915 Bacteria 5003
65 Ga0207663_10056051 3300025916 Bacteria 2476
66 Ga0207660_10007137 3300025917 Bacteria 7235
67 Ga0207652_10052844 3300025921 Bacteria 3489
68 Ga0207687_10037963 3300025927 Bacteria 3289
69 Ga0207700_10004022 3300025928 Bacteria 8608
70 Ga0207664_10000544 3300025929 Bacteria 26705
71 Ga0207661_10000008 3300025944 Bacteria 451211
72 Ga0207661_10041133 3300025944 Bacteria 3637
73 Ga0207667_10086455 3300025949 Bacteria 3245
74 Ga0207712_10019829 3300025961 Bacteria 4395
75 Ga0207648_10015571 3300026089 Bacteria 6988
76 Ga0207428_10000445 3300027907 Bacteria 50527
77 Ga0268266_10000140 3300028379 Bacteria 140387
78 Ga0268266_10214085 3300028379 Bacteria 1768
79 Ga0268265_10085824 3300028380 Bacteria 2500
80 Ga0265339_10008857 3300031249 Bacteria 6373
81 Ga0307408_100085672 3300031548 Bacteria 2366
82 Ga0307408_100126801 3300031548 Bacteria 1986
83 Ga0307407_10002624 3300031903 Bacteria 7108
84 Ga0307409_100038480 3300031995 Bacteria 3539
85 Ga0373937_0002147 3300036401 Bacteria 16510
86 Ga0373937_0034572 3300036401 Bacteria 4597
87 Ga0373937_0080639 3300036401 Bacteria 3010
88 Ga0373925_0015021 3300037068 Bacteria 5598
89 Ga0395900_0057918 3300037418 Bacteria 3989
90 Ga0395898_0177439 3300037466 Bacteria 2036
91 Ga0436364_0246457 3300037853 Bacteria 18153
92 Ga0436364_0740255 3300037853 Bacteria 2250
93 Ga0436364_0745557 3300037853 Bacteria 199469
94 Ga0436364_0930644 3300037853 Bacteria 6614
95 Ga0436365_0624285 3300039437 Bacteria 13234
96 Ga0436365_1630353 3300039437 Bacteria 2723
97 Ga0436363_1313375 3300039450 Unclassified 3249
98 Ga0439435_0002675 3300042436 Bacteria 3579
99 Ga0451576_0064699 3300045051 Bacteria 3809
100 Ga0495604_0069947 3300047317 Bacteria 2659
101 Ga0495674_0131864 3300047319 Bacteria 2105
102 Ga0496112_0086061 3300048915 Bacteria 3110
103 Ga0496115_0058496 3300048918 Bacteria 3102
104 Ga0501299_007028 3300049522 Bacteria 1782
105 Ga0501036_0142921 3300049572 Bacteria 2019
106 Ga0501038_0092695 3300049574 Bacteria 2529
107 Ga0501041_0039487 3300049577 Bacteria 2865
108 Ga0501047_0037775 3300049581 Bacteria 4670
109 Ga0501076_0022559 3300049592 Bacteria 4839
110 Ga0501035_0045507 3300049822 Bacteria 3949
111 Ga0501035_0060512 3300049822 Bacteria 3371
112 Ga0501044_0003567 3300049823 Bacteria 17505
113 Ga0501044_0003936 3300049823 Bacteria 16646
114 Ga0501044_0086832 3300049823 Bacteria 3160
115 Ga0501045_0064310 3300049824 Bacteria 2693
116 nmdc:mga05p37_638_c1 3300050507 Bacteria 38795
117 nmdc:mga09592_2864_c1 3300050508 Bacteria 13997
118 nmdc:mga0qj67_10376_c1 3300050509 Bacteria 6959
119 nmdc:mga06r32_25997_c1 3300050510 Bacteria 5454
120 nmdc:mga06r32_39402_c1 3300050510 Bacteria 4482
121 nmdc:mga08y16_68179_c1 3300050511 Bacteria 3709
122 nmdc:mga08y16_917_c1 3300050511 Bacteria 28573
123 nmdc:mga08x19_1752_c1 3300050514 Bacteria 13371
124 nmdc:mga0a205_54865_c1 3300050515 Bacteria 3848
125 nmdc:mga0a205_65629_c2 3300050515 Bacteria 3011
126 Ga0501084_0026778 3300054114 Bacteria 4816
127 Ga0501084_0076897 3300054114 Bacteria 2798
128 Ga0590074_002184 3300059423 Bacteria 3210
129 Ga0590077_008129 3300059426 Bacteria 2148
130 Ga0373933_0054058
131 Ga0065714_10069624
132 Ga0070683_100000035
133 Ga0070683_100016899
134 Ga0070668_100070682
135 Ga0070669_100009288
136 Ga0070714_100003786
137 Ga0070713_100002686
138 Ga0070713_100035877
139 Ga0070711_100019685
140 Ga0070711_100022635
141 Ga0070708_100000501
142 Ga0070699_100099902
143 Ga0070684_100000037
144 Ga0070684_100105907
145 Ga0070697_100101540
146 Ga0068853_100070392
147 Ga0070665_100000573
148 Ga0070665_100179763
149 Ga0068855_100077547
150 Ga0068856_100193008
151 Ga0068852_100005751
152 Ga0081455_10010457
153 Ga0070717_10051466
154 Ga0075428_100000995
155 Ga0075428_100004376
156 Ga0075430_100001021
157 Ga0075431_100001337
158 Ga0075431_100032323
159 Ga0075431_100033125
160 Ga0075433_10039886
161 Ga0075433_10048606
162 Ga0075434_100075122
163 Ga0075429_100000273
164 Ga0105240_10000772
165 Ga0105240_10002280
166 Ga0105240_10003935
167 Ga0111539_10000201
168 Ga0111539_10019890
169 Ga0111539_10052928
170 Ga0105247_10113373
171 Ga0114129_10000751
172 Ga0114129_10009299
173 Ga0114129_10226570
174 Ga0105237_10001560
175 Ga0105237_10021126
176 Ga0105249_10018949
177 Ga0157370_10008591
178 Ga0157370_10046892
179 Ga0157369_10003065
180 Ga0157374_10003653
181 Ga0157374_10014603
182 Ga0157372_10101204
183 Ga0157380_10008014
184 Ga0157379_10036714
185 Ga0163161_10020017
186 Ga0213876_10019554
187 Ga0207695_10003418
188 Ga0207695_10003560
189 Ga0207695_10006097
190 Ga0207695_10115931
191 Ga0207671_10007080
192 Ga0207671_10072524
193 Ga0207693_10022543
194 Ga0207663_10056051
195 Ga0207660_10007137
196 Ga0207652_10052844
197 Ga0207687_10037963
198 Ga0207700_10004022
199 Ga0207664_10000544
200 Ga0207661_10000008
201 Ga0207661_10041133
202 Ga0207667_10086455
203 Ga0207712_10019829
204 Ga0207648_10015571
205 Ga0207428_10000445
206 Ga0268266_10000140
207 Ga0268266_10214085
208 Ga0268265_10085824
209 Ga0265339_10008857
210 Ga0307408_100085672
211 Ga0307408_100126801
212 Ga0307407_10002624
213 Ga0307409_100038480
214 Ga0373937_0002147
215 Ga0373937_0034572
216 Ga0373937_0080639
217 Ga0373925_0015021
218 Ga0395900_0057918
219 Ga0395898_0177439
220 Ga0436364_0246457
221 Ga0436364_0740255
222 Ga0436364_0745557
223 Ga0436364_0930644
224 Ga0436365_0624285
225 Ga0436365_1630353
226 Ga0436363_1313375
227 Ga0439435_0002675
228 Ga0451576_0064699
229 Ga0495604_0069947
230 Ga0495674_0131864
231 Ga0496112_0086061
232 Ga0496115_0058496
233 Ga0501299_007028
234 Ga0501036_0142921
235 Ga0501038_0092695
236 Ga0501041_0039487
237 Ga0501047_0037775
238 Ga0501076_0022559
239 Ga0501035_0045507
240 Ga0501035_0060512
241 Ga0501044_0003567
242 Ga0501044_0003936
243 Ga0501044_0086832
244 Ga0501045_0064310
245 nmdc:mga05p37_638_c1
246 nmdc:mga09592_2864_c1
247 nmdc:mga0qj67_10376_c1
248 nmdc:mga06r32_25997_c1
249 nmdc:mga06r32_39402_c1
250 nmdc:mga08y16_68179_c1
251 nmdc:mga08y16_917_c1
252 nmdc:mga08x19_1752_c1
253 nmdc:mga0a205_54865_c1
254 nmdc:mga0a205_65629_c2
255 Ga0501084_0026778
256 Ga0501084_0076897
257 Ga0590074_002184
258 Ga0590077_008129

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07593

UnbV_ASPIC

ASPIC and UnbV

501

570

0.91

PF13517

FG-GAP_3

FG-GAP-like repeat

103

176

0.9

PF13517

FG-GAP_3

FG-GAP-like repeat

238

289

0.88

PF13517

FG-GAP_3

FG-GAP-like repeat

165

219

0.86

PF01839

FG-GAP

FG-GAP repeat

157

193

0.85

PF13517

FG-GAP_3

FG-GAP-like repeat

334

400

0.85

PF13517

FG-GAP_3

FG-GAP-like repeat

278

345

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vbv-assembly1.cif.gz_1 structure of the bovine bbsome:arl6:gtp complex 0.6537 76 455
4v0m-assembly3.cif.gz_D crystal structure of bbs1n in complex with arl6dn 0.6407 42 451
7uhy-assembly1.cif.gz_H-2 human gator2 complex 0.632 72 409
4v0m-assembly3.cif.gz_D crystal structure of bbs1n in complex with arl6dn 0.6174 42 451
2pm7-assembly1.cif.gz_D crystal structure of yeast sec13/31 edge element of the copii vesicular coat, selenomethionine version 0.6154 216 553
ID Description Score Start End Superfamily
af_Q8K1S1_252_395_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7916 245 403 2.130.10.10
af_A1XF92_202_447_2.130.10.130 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;Integrin alpha, N-terminal 0.7857 151 403 2.130.10.130
af_Q6XHB2_1550_1717_2.110.10.10 Mainly Beta;4 Propeller;Hemopexin;Hemopexin-like domain 0.7319 165 378 2.110.10.10
af_I1LFD7_6_84_3.50.70.10 Alpha Beta;3-Layer(bba) Sandwich;Chalcone isomerase; 0.7283 304 376 3.50.70.10
af_A0A0R0IEY4_160_287_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7034 165 331 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A2V9P967-F1-model_v4 CRTAC1 family protein 0.9831 285 434
AF-A0A2V9P967-F1-model_v4 CRTAC1 family protein 0.9704 285 434
AF-A0A2V8ZI22-F1-model_v4 ASPIC/UnbV domain-containing protein 0.9682 233 554
AF-A0A1Q6X591-F1-model_v4 RNA-binding protein 0.9668 67 497
AF-A0A2V9NS08-F1-model_v4 CRTAC1 family protein 0.9639 243 552

Map