F141697

General Info

Members Datasets Scaffolds Average Seq Length
129 102 121 612

Family's Representative Sequence

Representative Sequence 3300009551|Ga0105238_10145944|Ga0105238_101459441
Length 670
Sequence MALTVVAAIPTGDKIARQPAPAIVRPNFVALYNATKQAGLGAHGMAHDSMIGRRGILAGTTALWIGGAPAITRAQTTGTSAAGDTIISHGFATHGDLKYPKDARHLEYVNPGAPKGGAVRLAGRGSFDSLNPYILKGTPAAAVGAIYETLIEQTNDEAATAYGLLAETIETPRDRSWATFTLRAAARWHDGKPVTPEDVVFSFETLKTKGAPQYAAYWQDVVKAEKVGERAVKFTFASGTNNELPGIIGQIPVLPSHWWATRDFEKTSLEIPLGSGAYRVDSFEAGRYIALKRVADYWGRDLWLNRGRNNFDVMRYDYYRDETVAFEAFKAGDVDYREEYTSRNWATGYDTPAVKSGAIQRAVLKHQSTLPMQCLAFNLRREMFKDRRVREAFVHLVDFEWYNKTLSYGLLTRVNSYFFNSELAATGLPSKEELAILEPLRGQVPDEVFTREFKLPVTDGSGNNRDGARRAIALLKDAGWEVRNGRMVDKKSGQPFSFELLLGEPRLERFALPFKQWCERVGVEVRLRTVDPAQYQKRMDDFDYDMTTELFAQSLSPGNEQREFWGSRAAATKGSRNTLGIADPAIDKLIELVISAPDRESLIMRTRALDRVLLWHQYVVPQYYSTEFWIAYWNKFGRPEKLAKYQPRGLEPWWIDVEKEKTLAAGGARK

Samples

Sample ID Description Type Environment
1 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
2 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
3 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
4 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
5 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
6 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
32 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
52 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
54 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
57 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
58 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
59 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
67 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
73 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
76 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
77 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
78 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
79 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
80 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
87 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
88 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
90 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
91 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
92 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
93 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
94 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
95 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
96 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
97 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
98 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
101 640427133 Stutzerimonas stutzeri A1501 Isolate Rhizosphere
102 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.57
Metatranscriptomes 0
Isolates 5.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.2
Nodule 0
Rhizoplane 0
Rhizosphere 83.72
Stem 0
Stem Tuber 0
Unclassified 10.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10005681 3300003203 Bacteria 5766
2 Ga0070658_10002624 3300005327 Bacteria 14975
3 Ga0070683_100022733 3300005329 Bacteria 5608
4 Ga0070680_100016925 3300005336 Bacteria 5740
5 Ga0070680_100027500 3300005336 Bacteria 4554
6 Ga0070660_100038220 3300005339 Bacteria 3643
7 Ga0070709_10010662 3300005434 Bacteria 5096
8 Ga0070714_100005062 3300005435 Bacteria 10029
9 Ga0070711_100009951 3300005439 Bacteria 5866
10 Ga0070700_100085774 3300005441 Bacteria 2043
11 Ga0070706_100094600 3300005467 Bacteria 2772
12 Ga0070698_100002038 3300005471 Bacteria 22446
13 Ga0070679_100036958 3300005530 Bacteria 4848
14 Ga0070684_100020299 3300005535 Bacteria 5511
15 Ga0070665_100012828 3300005548 Bacteria 8437
16 Ga0070665_100022251 3300005548 Bacteria 6377
17 Ga0068857_100005107 3300005577 Bacteria 11162
18 Ga0068856_100043078 3300005614 Bacteria 4441
19 Ga0068856_100096405 3300005614 Bacteria 2946
20 Ga0068856_100155883 3300005614 Bacteria 2294
21 Ga0068852_100054556 3300005616 Bacteria 3446
22 Ga0081455_10002426 3300005937 Bacteria 22239
23 Ga0081455_10016919 3300005937 Bacteria 7010
24 Ga0081539_10000670 3300005985 Bacteria 68682
25 Ga0081539_10006881 3300005985 Bacteria 10613
26 Ga0070712_100008914 3300006175 Bacteria 6317
27 Ga0075362_10019970 3300006177 Bacteria 2795
28 Ga0075366_10011832 3300006195 Bacteria 4935
29 Ga0099794_10005466 3300007265 Bacteria 5093
30 Ga0105240_10009977 3300009093 Bacteria 13386
31 Ga0105238_10145944 3300009551 Bacteria 2342
32 Ga0182008_10009027 3300014497 Bacteria 5401
33 Ga0213876_10007560 3300021384 Bacteria 5901
34 Ga0213875_10005689 3300021388 Bacteria 6648
35 Ga0213875_10009117 3300021388 Bacteria 5040
36 Ga0207705_10090977 3300025909 Bacteria 2234
37 Ga0207684_10141180 3300025910 Bacteria 2070
38 Ga0207707_10057913 3300025912 Bacteria 3372
39 Ga0207693_10008851 3300025915 Bacteria 8221
40 Ga0207657_10058015 3300025919 Bacteria 3333
41 Ga0207652_10007789 3300025921 Bacteria 8605
42 Ga0207694_10097434 3300025924 Bacteria 2327
43 Ga0207700_10033572 3300025928 Bacteria 3673
44 Ga0207700_10037434 3300025928 Bacteria 3513
45 Ga0207664_10001114 3300025929 Bacteria 17896
46 Ga0207664_10034964 3300025929 Bacteria 3874
47 Ga0207664_10077300 3300025929 Bacteria 2697
48 Ga0207690_10018389 3300025932 Bacteria 4287
49 Ga0207661_10033879 3300025944 Bacteria 3967
50 Ga0207679_10040359 3300025945 Bacteria 3340
51 Ga0207667_10136259 3300025949 Bacteria 2528
52 Ga0207674_10050728 3300026116 Bacteria 4238
53 Ga0207683_10028502 3300026121 Bacteria 4828
54 Ga0207698_10031038 3300026142 Bacteria 3852
55 Ga0268266_10016205 3300028379 Bacteria 6371
56 Ga0265334_10022375 3300028573 Bacteria 2576
57 Ga0373923_0011194 3300035111 Bacteria 3284
58 Ga0373953_0019158 3300035117 Bacteria 2542
59 Ga0373956_0008926 3300035119 Bacteria 4063
60 Ga0316574_0057837 3300035398 Bacteria 2428
61 Ga0373937_0005979 3300036401 Bacteria 10474
62 Ga0373937_0013212 3300036401 Bacteria 7271
63 Ga0316582_0104892 3300036647 Bacteria 1876
64 Ga0316584_0056356 3300036712 Bacteria 2942
65 Ga0373925_0010791 3300037068 Bacteria 6625
66 Ga0373925_0079002 3300037068 Bacteria 2499
67 Ga0395899_0004179 3300037312 Bacteria 11337
68 Ga0395899_0016481 3300037312 Bacteria 5635
69 Ga0395900_0001541 3300037418 Bacteria 27362
70 Ga0395900_0006956 3300037418 Bacteria 11729
71 Ga0395900_0013017 3300037418 Bacteria 8501
72 Ga0395900_0027506 3300037418 Bacteria 5826
73 Ga0395898_0011413 3300037466 Bacteria 9228
74 Ga0395898_0029624 3300037466 Bacteria 5479
75 Ga0436364_0087360 3300037853 Bacteria 16159
76 Ga0436364_0215199 3300037853 Bacteria 11941
77 Ga0436364_1447190 3300037853 Bacteria 5584
78 Ga0395901_0004782 3300038443 Bacteria 13666
79 Ga0395901_0005990 3300038443 Bacteria 12312
80 Ga0395901_0023846 3300038443 Bacteria 6275
81 Ga0436365_0046188 3300039437 Bacteria 6987
82 Ga0436365_0822216 3300039437 Bacteria 4697
83 Ga0436360_0394729 3300039438 Bacteria 4498
84 Ga0436360_0729200 3300039438 Bacteria 2225
85 Ga0436360_1374381 3300039438 Bacteria 17019
86 Ga0451577_0051553 3300042876 Bacteria 3673
87 Ga0466963_0042020 3300044694 Bacteria 3000
88 Ga0466960_0049513 3300044901 Bacteria 2023
89 Ga0451576_0001683 3300045051 Bacteria 36623
90 Ga0495651_0013387 3300046462 Bacteria 6344
91 Ga0495664_0013016 3300046477 Bacteria 4716
92 Ga0495608_0070435 3300046511 Bacteria 2282
93 Ga0495587_0009144 3300046536 Bacteria 6356
94 Ga0495645_0000687 3300046543 Bacteria 23266
95 Ga0495667_0034375 3300046559 Bacteria 3390
96 Ga0495599_0007464 3300046678 Bacteria 6629
97 Ga0495674_0129083 3300047319 Bacteria 2131
98 Ga0495675_0012439 3300047444 Bacteria 5357
99 Ga0495602_0002144 3300048088 Bacteria 19922
100 Ga0496119_0006343 3300048922 Bacteria 11005
101 Ga0501034_0001575 3300049571 Bacteria 29775
102 Ga0501036_0057527 3300049572 Bacteria 3294
103 Ga0501048_0054937 3300049582 Bacteria 2829
104 Ga0501070_0100353 3300049586 Bacteria 2395
105 Ga0501071_0037075 3300049587 Bacteria 3480
106 Ga0501071_0090000 3300049587 Bacteria 2253
107 Ga0501076_0012334 3300049592 Bacteria 6391
108 Ga0501044_0019926 3300049823 Bacteria 7165
109 Ga0501045_0006111 3300049824 Bacteria 8340
110 nmdc:mga0yw44_83536_c1 3300050492 Bacteria 2006
111 nmdc:mga0k408_12836_c1 3300050493 Bacteria 4585
112 Ga0495601_0002527 3300053077 Bacteria 10405
113 Ga0495612_0001064 3300053078 Bacteria 11240
114 Ga0495595_0010647 3300053084 Bacteria 3829
115 Ga0495619_0046958 3300053085 Bacteria 2841
116 Ga0500642_0000814 3300053130 Bacteria 9147
117 Ga0500568_0002622 3300053139 Bacteria 10461
118 Ga0500552_001393 3300053733 Bacteria 2311
119 Ga0501084_0034852 3300054114 Bacteria 4209
120 Ga0501084_0067664 3300054114 Bacteria 2990
121 Ga0530510_0003670 3300061734 Bacteria 10564

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044901 Ga0466960_0049513 Ga0466960_0049513_22_1530 499
2 3300053078 Ga0495612_0001064 Ga0495612_0001064_9641_11209 521
3 3300049587 Ga0501071_0037075 Ga0501071_0037075_1394_2995 530
4 3300037068 Ga0373925_0010791 Ga0373925_0010791_4679_6550 560
5 3300046462 Ga0495651_0013387 Ga0495651_0013387_4446_6317 560
6 3300035111 Ga0373923_0011194 Ga0373923_0011194_865_2715 570
7 3300035117 Ga0373953_0019158 Ga0373953_0019158_488_2338 570
8 3300035119 Ga0373956_0008926 Ga0373956_0008926_520_2370 570
9 3300036401 Ga0373937_0005979 Ga0373937_0005979_4853_6703 570
10 3300046511 Ga0495608_0070435 Ga0495608_0070435_302_2152 570
11 3300046559 Ga0495667_0034375 Ga0495667_0034375_992_2842 570
12 3300047319 Ga0495674_0129083 Ga0495674_0129083_92_1963 570
13 3300053084 Ga0495595_0010647 Ga0495595_0010647_59_1909 570
14 3300037853 Ga0436364_1447190 Ga0436364_1447190_2959_4815 571
15 3300005434 Ga0070709_10010662 Ga0070709_100106622 575
16 3300005439 Ga0070711_100009951 Ga0070711_1000099514 575
17 3300006175 Ga0070712_100008914 Ga0070712_1000089144 575
18 3300025915 Ga0207693_10008851 Ga0207693_100088512 575
19 3300025928 Ga0207700_10037434 Ga0207700_100374342 575
20 3300025929 Ga0207664_10077300 Ga0207664_100773002 575
21 3300036647 Ga0316582_0104892 Ga0316582_0104892_25_1764 575
22 3300049586 Ga0501070_0100353 Ga0501070_0100353_63_1907 581
23 3300049823 Ga0501044_0019926 Ga0501044_0019926_3742_5586 581
24 3300036401 Ga0373937_0013212 Ga0373937_0013212_4944_6815 584
25 3300037418 Ga0395900_0001541 Ga0395900_0001541_19774_21618 584
26 3300038443 Ga0395901_0005990 Ga0395901_0005990_6226_8070 584
27 3300048922 Ga0496119_0006343 Ga0496119_0006343_8815_10713 585
28 3300049582 Ga0501048_0054937 Ga0501048_0054937_681_2483 586
29 3300054114 Ga0501084_0067664 Ga0501084_0067664_1172_2974 586
30 3300050492 nmdc:mga0yw44_83536_c1 nmdc:mga0yw44_83536_c1_23_1828 587
31 3300049571 Ga0501034_0001575 Ga0501034_0001575_26122_27960 588
32 3300039437 Ga0436365_0822216 Ga0436365_0822216_1126_2937 589
33 3300042876 Ga0451577_0051553 Ga0451577_0051553_930_2735 589
34 3300045051 Ga0451576_0001683 Ga0451576_0001683_22733_24514 589
35 3300054114 Ga0501084_0034852 Ga0501084_0034852_1959_3767 589
36 3300053139 Ga0500568_0002622 Ga0500568_0002622_5136_6944 591
37 3300009093 Ga0105240_10009977 Ga0105240_1000997712 592
38 3300005329 Ga0070683_100022733 Ga0070683_1000227332 593
39 3300005535 Ga0070684_100020299 Ga0070684_1000202995 593
40 3300005614 Ga0068856_100043078 Ga0068856_1000430784 593
41 3300005616 Ga0068852_100054556 Ga0068852_1000545562 593
42 3300025932 Ga0207690_10018389 Ga0207690_100183894 593
43 3300025944 Ga0207661_10033879 Ga0207661_100338792 593
44 3300025945 Ga0207679_10040359 Ga0207679_100403592 593
45 3300026142 Ga0207698_10031038 Ga0207698_100310382 593
46 3300005336 Ga0070680_100027500 Ga0070680_1000275002 594
47 3300005435 Ga0070714_100005062 Ga0070714_1000050623 594
48 3300005614 Ga0068856_100096405 Ga0068856_1000964052 594
49 3300014497 Ga0182008_10009027 Ga0182008_100090274 594
50 3300025929 Ga0207664_10001114 Ga0207664_1000111413 594
51 3300025929 Ga0207664_10034964 Ga0207664_100349642 594
52 3300036712 Ga0316584_0056356 Ga0316584_0056356_126_1931 594
53 3300039438 Ga0436360_0394729 Ga0436360_0394729_805_2670 594
54 3300046477 Ga0495664_0013016 Ga0495664_0013016_1159_3030 594
55 3300046536 Ga0495587_0009144 Ga0495587_0009144_2410_4281 594
56 3300046543 Ga0495645_0000687 Ga0495645_0000687_20729_22600 594
57 3300046678 Ga0495599_0007464 Ga0495599_0007464_4292_6163 594
58 3300047444 Ga0495675_0012439 Ga0495675_0012439_587_2458 594
59 3300048088 Ga0495602_0002144 Ga0495602_0002144_1232_3103 594
60 3300053077 Ga0495601_0002527 Ga0495601_0002527_1701_3572 594
61 3300053085 Ga0495619_0046958 Ga0495619_0046958_163_2034 594
62 3300005441 Ga0070700_100085774 Ga0070700_1000857742 597
63 iso_pu_bacteria 2883577096 2883579076 597
64 3300005937 Ga0081455_10016919 Ga0081455_100169194 598
65 3300025928 Ga0207700_10033572 Ga0207700_100335722 598
66 3300035398 Ga0316574_0057837 Ga0316574_0057837_384_2231 598
67 3300037068 Ga0373925_0079002 Ga0373925_0079002_148_1986 598
68 3300039438 Ga0436360_0729200 Ga0436360_0729200_293_2122 598
69 3300005937 Ga0081455_10002426 Ga0081455_1000242616 600
70 3300028573 Ga0265334_10022375 Ga0265334_100223752 600
71 3300037312 Ga0395899_0004179 Ga0395899_0004179_4214_6058 600
72 3300037418 Ga0395900_0006956 Ga0395900_0006956_7737_9581 600
73 3300037466 Ga0395898_0011413 Ga0395898_0011413_4214_6058 600
74 3300038443 Ga0395901_0004782 Ga0395901_0004782_3044_4888 600
75 3300044694 Ga0466963_0042020 Ga0466963_0042020_954_2804 600
76 3300005548 Ga0070665_100012828 Ga0070665_1000128283 601
77 3300005548 Ga0070665_100022251 Ga0070665_1000222513 601
78 3300026121 Ga0207683_10028502 Ga0207683_100285024 601
79 3300028379 Ga0268266_10016205 Ga0268266_100162053 601
80 3300037312 Ga0395899_0016481 Ga0395899_0016481_2863_4710 601
81 3300037418 Ga0395900_0013017 Ga0395900_0013017_4206_6053 601
82 3300037418 Ga0395900_0027506 Ga0395900_0027506_2293_4140 601
83 3300037466 Ga0395898_0029624 Ga0395898_0029624_596_2443 601
84 3300038443 Ga0395901_0023846 Ga0395901_0023846_754_2601 601
85 3300053130 Ga0500642_0000814 Ga0500642_0000814_2826_4688 601
86 3300005577 Ga0068857_100005107 Ga0068857_1000051078 602
87 3300006195 Ga0075366_10011832 Ga0075366_100118323 602
88 3300007265 Ga0099794_10005466 Ga0099794_100054662 602
89 3300026116 Ga0207674_10050728 Ga0207674_100507283 602
90 3300039438 Ga0436360_1374381 Ga0436360_1374381_2425_4287 602
91 3300049572 Ga0501036_0057527 Ga0501036_0057527_401_2251 602
92 3300049587 Ga0501071_0090000 Ga0501071_0090000_381_2231 602
93 3300049592 Ga0501076_0012334 Ga0501076_0012334_1569_3419 602
94 3300049824 Ga0501045_0006111 Ga0501045_0006111_5476_7326 602
95 3300050493 nmdc:mga0k408_12836_c1 nmdc:mga0k408_12836_c1_873_2741 602
96 3300053139 Ga0500568_0002622 Ga0500568_0002622_3227_5089 602
97 3300061734 Ga0530510_0003670 Ga0530510_0003670_560_2410 602
98 iso_pu_bacteria 2990196909 2990199007 602
99 3300005467 Ga0070706_100094600 Ga0070706_1000946002 604
100 3300005471 Ga0070698_100002038 Ga0070698_10000203813 604
101 3300005985 Ga0081539_10006881 Ga0081539_100068816 604
102 3300021388 Ga0213875_10005689 Ga0213875_100056896 604
103 3300025910 Ga0207684_10141180 Ga0207684_101411801 604
104 3300037853 Ga0436364_0087360 Ga0436364_0087360_10550_12397 604
105 iso_pu_bacteria 2894772417 2894773503 604
106 iso_pu_bacteria 2929199973 2929205649 604
107 iso_pu_bacteria 8055909800 8055916335 604
108 3300005327 Ga0070658_10002624 Ga0070658_1000262410 605
109 3300005336 Ga0070680_100016925 Ga0070680_1000169254 605
110 3300005339 Ga0070660_100038220 Ga0070660_1000382203 605
111 3300005530 Ga0070679_100036958 Ga0070679_1000369582 605
112 3300005614 Ga0068856_100155883 Ga0068856_1001558832 605
113 3300006177 Ga0075362_10019970 Ga0075362_100199702 605
114 3300009551 Ga0105238_10145944 Ga0105238_101459441 605
115 3300021384 Ga0213876_10007560 Ga0213876_100075602 605
116 3300021388 Ga0213875_10009117 Ga0213875_100091174 605
117 3300025909 Ga0207705_10090977 Ga0207705_100909772 605
118 3300025912 Ga0207707_10057913 Ga0207707_100579133 605
119 3300025919 Ga0207657_10058015 Ga0207657_100580153 605
120 3300025921 Ga0207652_10007789 Ga0207652_100077896 605
121 3300025924 Ga0207694_10097434 Ga0207694_100974342 605
122 3300025949 Ga0207667_10136259 Ga0207667_101362592 605
123 3300037853 Ga0436364_0215199 Ga0436364_0215199_7970_9859 605
124 3300039437 Ga0436365_0046188 Ga0436365_0046188_60_1934 605
125 3300053733 Ga0500552_001393 Ga0500552_001393_57_1916 605
126 iso_pu_bacteria 2842775625 2842780183 607
127 iso_pu_bacteria 640427133 640487663 607
128 3300003203 JGI25406J46586_10005681 JGI25406J46586_100056814 609
129 3300005985 Ga0081539_10000670 Ga0081539_1000067064 609

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

160

573

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ony-assembly2.cif.gz_B crystal structure of a abc transporter, periplasmic substrate-binding protein from brucella melitensis 0.9548 30 595
3pam-assembly1.cif.gz_A crystal structure of a domain of transmembrane protein of abc-type oligopeptide transport system from bartonella henselae str. houston-1 0.952 312 563
3lvu-assembly2.cif.gz_B crystal structure of abc transporter, periplasmic substrate-binding protein spo2066 from silicibacter pomeroyi 0.9515 310 563
5icq-assembly1.cif.gz_A methanobactin periplasmic binding protein 0.9459 29 595
5icq-assembly1.cif.gz_A methanobactin periplasmic binding protein 0.9427 29 595
ID Description Score Start End Superfamily
5icqA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9616 29 307 3.40.190.10
af_P33913_25_296_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9604 29 297 3.40.190.10
4onyB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9573 30 302 3.40.190.10
af_P33913_303_559_3.10.105.10 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.9511 309 562 3.10.105.10
af_P33913_25_296_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9431 29 297 3.40.190.10
ID Description Score Start End GO Terms
AF-E3HZ54-F1-model_v4 Extracellular solute-binding protein family 5 0.9848 26 602 GO:0015833
GO:0030288
GO:0042884
GO:0043190
GO:1904680
AF-A0A2E3XE02-F1-model_v4 ABC transporter substrate-binding protein 0.982 35 596 GO:0015833
GO:0030288
GO:0042884
GO:0043190
GO:1904680
AF-A0A660UD25-F1-model_v4 ABC transporter substrate-binding protein 0.9816 367 597 GO:0015833
GO:0030288
GO:0042884
GO:1904680
AF-A0A7C1Z1A7-F1-model_v4 ABC transporter substrate-binding protein 0.9799 316 609 GO:0015833
GO:0030288
GO:0042884
GO:1904680
AF-A0A2V6W214-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9793 256 596 GO:0015833
GO:0030288
GO:0042884
GO:1904680

Feature Viewer

pLDDT pTM Quality
92.21 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map