F139619

General Info

Members Datasets Scaffolds Average Seq Length
128 97 256 354

Family's Representative Sequence

Representative Sequence 3300049588|Ga0501072_0021290|Ga0501072_0021290_2618_3868
Length 403
Sequence MDETIIRSLGRSGAAHGSAIRRNSRDGCRGATAGRLASVTETTAVATPADPVPDEFRETIGATLASFIDTKAASLAPLGSDLTPLFDAARHAVAGGKRLRPAFAYWGWRAAGGSAEAPDAIIKAGAAIELVHASALVHDDVMDASATRRGYPAAHHVFTQSRTTSVTAPLATRFGNSAAILLGDLLLSWSDELLCEADVKPRRLAEARRYFDKLRTEVVAGQYLDVLAQTTAGHSPADAMRVVRYKSAKYTVERPLQFGAALAKASPELLRALSSYGVPLGEAFQLRDDILGVFGETSLTGKPSGDDIREGKRTLLMARAYGKATPAQRAVLDQYVGNPALDEAGVDAVQQVLRDTGAVAAVETVIAELTHAALAALHAAPISGDEPRTALRVLTDRVTNRAV

Samples

Sample ID Description Type Environment
1 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
2 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
3 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
4 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
10 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
13 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
14 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
21 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
23 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
34 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
35 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
36 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
37 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
38 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
39 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
42 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
43 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
44 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
45 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
46 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
47 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
48 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
49 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
50 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
51 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
52 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
53 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
54 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
55 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
58 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
65 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
66 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
67 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
68 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
69 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
70 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
71 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
72 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
73 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
75 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
76 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
77 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
78 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
79 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
80 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
81 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
82 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
83 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
84 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
85 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
86 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
87 2643221561 Nocardioides sp. Root151 Isolate Unclassified
88 2643221615 Nocardioides sp. Root224 Isolate Unclassified
89 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
90 2643221696 Nocardioides sp. Root140 Isolate Unclassified
91 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
92 2739367898 Nocardioides sp. CF479 Isolate Unclassified
93 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
94 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
95 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
96 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
97 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.62
Metatranscriptomes 0.78
Isolates 8.59

Biome Distribution

Category Percentage (%)
Aerial Root 1.56
Bulb 0
Endosphere 10.94
Nodule 0
Rhizoplane 1.56
Rhizosphere 77.34
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501072_0021290 3300049588 Bacteria 5029
2 Ga0070708_100000752 3300005445 Bacteria 24458
3 Ga0070708_100002297 3300005445 Bacteria 14799
4 Ga0070663_100073531 3300005455 Bacteria 2493
5 Ga0070706_100020964 3300005467 Bacteria 6016
6 Ga0070707_100002491 3300005468 Bacteria 17545
7 Ga0070707_100219923 3300005468 Bacteria 1850
8 Ga0070698_100078885 3300005471 Bacteria 3291
9 Ga0070698_100231604 3300005471 Bacteria 1780
10 Ga0070698_100294057 3300005471 Bacteria 1555
11 Ga0070665_100043197 3300005548 Bacteria 4530
12 Ga0068855_100034931 3300005563 Bacteria 5991
13 Ga0068852_100011409 3300005616 Bacteria 6688
14 Ga0081539_10088266 3300005985 Bacteria 1609
15 Ga0075365_10081501 3300006038 Bacteria 2192
16 Ga0075363_100148291 3300006048 Bacteria 1323
17 Ga0075364_10004909 3300006051 Bacteria 7751
18 Ga0075364_10051763 3300006051 Bacteria 2682
19 Ga0075370_10019593 3300006353 Bacteria 3687
20 Ga0105245_10117467 3300009098 Bacteria 2481
21 Ga0105241_10004168 3300009174 Bacteria 10674
22 Ga0105238_10036073 3300009551 Bacteria 5026
23 Ga0105239_10258489 3300010375 Bacteria 1957
24 Ga0157369_10002627 3300013105 Bacteria 21471
25 Ga0157369_10349301 3300013105 Bacteria 1536
26 Ga0157374_10037533 3300013296 Bacteria 4447
27 Ga0206353_11065313 3300020082 Bacteria 3226
28 Ga0213876_10002692 3300021384 Bacteria 10373
29 Ga0207654_10060665 3300025911 Bacteria 2210
30 Ga0207695_10006773 3300025913 Bacteria 14773
31 Ga0207671_10001245 3300025914 Bacteria 30022
32 Ga0207646_10011877 3300025922 Bacteria 8400
33 Ga0207694_10002582 3300025924 Bacteria 14684
34 Ga0207687_10088192 3300025927 Bacteria 2256
35 Ga0207661_10038185 3300025944 Bacteria 3762
36 Ga0207640_10016135 3300025981 Bacteria 4337
37 Ga0207702_10117446 3300026078 Bacteria 2375
38 Ga0207702_10268443 3300026078 Bacteria 1609
39 Ga0268266_10098694 3300028379 Bacteria 2570
40 Ga0307508_10112252 3300031616 Bacteria 2326
41 Ga0307514_10017102 3300031649 Bacteria 5969
42 Ga0307416_100029938 3300032002 Bacteria 4077
43 Ga0373925_0248582 3300037068 Bacteria 1426
44 Ga0436365_1767487 3300039437 Bacteria 27437
45 Ga0436363_0677108 3300039450 Bacteria 2590
46 Ga0466969_0003990 3300044656 Bacteria 7833
47 Ga0466965_0018239 3300044683 Bacteria 3362
48 Ga0466965_0057343 3300044683 Bacteria 1941
49 Ga0466966_0036359 3300044684 Bacteria 3179
50 Ga0466961_0009538 3300044693 Bacteria 6179
51 Ga0466961_0091555 3300044693 Bacteria 1920
52 Ga0466961_0201959 3300044693 Bacteria 1229
53 Ga0466963_0040957 3300044694 Bacteria 3037
54 Ga0466964_0029347 3300044706 Bacteria 2171
55 Ga0466970_0006637 3300044765 Bacteria 5785
56 Ga0466970_0007715 3300044765 Bacteria 5399
57 Ga0466957_0001573 3300044842 Bacteria 12009
58 Ga0466957_0054014 3300044842 Bacteria 2451
59 Ga0466959_0025807 3300045049 Bacteria 4358
60 Ga0466967_0004846 3300045976 Bacteria 9181
61 Ga0466967_0034636 3300045976 Bacteria 4289
62 Ga0466967_0074989 3300045976 Bacteria 3040
63 Ga0466967_0148877 3300045976 Bacteria 2186
64 Ga0466967_0164833 3300045976 Bacteria 2082
65 Ga0466967_0422600 3300045976 Bacteria 1299
66 Ga0495651_0000122 3300046462 Bacteria 57344
67 Ga0495664_0041430 3300046477 Bacteria 2725
68 Ga0495656_0006422 3300046615 Bacteria 4125
69 Ga0495589_0097429 3300046794 Bacteria 1425
70 Ga0496109_0441778 3300048912 Bacteria 1229
71 Ga0496110_0078782 3300048913 Bacteria 2934
72 Ga0501031_0038388 3300049568 Bacteria 3125
73 Ga0501032_0049714 3300049569 Bacteria 2829
74 Ga0501032_0124244 3300049569 Bacteria 1705
75 Ga0501034_0109300 3300049571 Bacteria 2756
76 Ga0501036_0117279 3300049572 Bacteria 2248
77 Ga0501038_0018977 3300049574 Bacteria 6206
78 Ga0501040_0013033 3300049576 Bacteria 5466
79 Ga0501041_0024718 3300049577 Bacteria 3606
80 Ga0501046_0165119 3300049580 Bacteria 1663
81 Ga0501047_0245004 3300049581 Bacteria 1642
82 Ga0501068_0041748 3300049584 Bacteria 2757
83 Ga0501069_0022456 3300049585 Bacteria 3432
84 Ga0501069_0140156 3300049585 Bacteria 1387
85 Ga0501070_0008831 3300049586 Bacteria 8518
86 Ga0501070_0020327 3300049586 Bacteria 5570
87 Ga0501070_0126412 3300049586 Bacteria 2112
88 Ga0501073_0220486 3300049589 Bacteria 1310
89 Ga0501074_0015141 3300049590 Bacteria 5608
90 Ga0501074_0209415 3300049590 Bacteria 1389
91 Ga0501075_0117538 3300049591 Bacteria 2021
92 Ga0501076_0028473 3300049592 Bacteria 4338
93 Ga0501079_0002856 3300049741 Bacteria 12596
94 Ga0501079_0033249 3300049741 Bacteria 3967
95 Ga0501079_0138684 3300049741 Bacteria 1894
96 Ga0501080_0001965 3300049742 Bacteria 17741
97 Ga0501080_0005128 3300049742 Bacteria 11671
98 Ga0501080_0021934 3300049742 Bacteria 5915
99 Ga0501080_0086884 3300049742 Bacteria 2906
100 Ga0501035_0269942 3300049822 Bacteria 1440
101 Ga0501044_0009023 3300049823 Bacteria 10901
102 nmdc:mga03n38_10479_c1 3300050490 Bacteria 3412
103 nmdc:mga03n38_20495_c1 3300050490 Bacteria 2646
104 nmdc:mga00v17_37341_c1 3300050491 Bacteria 2900
105 nmdc:mga00v17_77189_c1 3300050491 Bacteria 2073
106 nmdc:mga0yw44_36435_c1 3300050492 Bacteria 2899
107 nmdc:mga06z11_138351_c1 3300050494 Bacteria 1374
108 nmdc:mga0qj67_95643_c1 3300050509 Bacteria 2391
109 Ga0500556_0001257 3300053104 Bacteria 11670
110 Ga0500593_000210 3300053117 Bacteria 24004
111 Ga0500628_022284 3300053129 Bacteria 1294
112 Ga0501084_0046351 3300054114 Bacteria 3641
113 Ga0501084_0062267 3300054114 Bacteria 3123
114 Ga0501082_0140730 3300060353 Bacteria 2094
115 Ga0466962_0079409 3300061719 Bacteria 1568
116 Ga0530510_0009569 3300061734 Bacteria 6798
117 Ga0530510_0049656 3300061734 Bacteria 3030
118 2643825542 2643221561 Bacteria 4984412
119 2644089609 2643221615 Bacteria 5487866
120 2644319454 2643221657 Bacteria 5490246
121 2644531538 2643221696 Bacteria 5431823
122 2731908079 2731639228 Bacteria 4187555
123 2740166974 2739367898 Bacteria 4367674
124 2819739666 2818991472 Bacteria 10089953
125 2966924700 2966924647 Bacteria 3268643
126 2984580637 2984576629 Bacteria 4248407
127 2990258329 2990256926 Bacteria 4252839
128 8055175633 8055172936 Bacteria 9305943
129 Ga0501072_0021290
130 Ga0070708_100000752
131 Ga0070708_100002297
132 Ga0070663_100073531
133 Ga0070706_100020964
134 Ga0070707_100002491
135 Ga0070707_100219923
136 Ga0070698_100078885
137 Ga0070698_100231604
138 Ga0070698_100294057
139 Ga0070665_100043197
140 Ga0068855_100034931
141 Ga0068852_100011409
142 Ga0081539_10088266
143 Ga0075365_10081501
144 Ga0075363_100148291
145 Ga0075364_10004909
146 Ga0075364_10051763
147 Ga0075370_10019593
148 Ga0105245_10117467
149 Ga0105241_10004168
150 Ga0105238_10036073
151 Ga0105239_10258489
152 Ga0157369_10002627
153 Ga0157369_10349301
154 Ga0157374_10037533
155 Ga0206353_11065313
156 Ga0213876_10002692
157 Ga0207654_10060665
158 Ga0207695_10006773
159 Ga0207671_10001245
160 Ga0207646_10011877
161 Ga0207694_10002582
162 Ga0207687_10088192
163 Ga0207661_10038185
164 Ga0207640_10016135
165 Ga0207702_10117446
166 Ga0207702_10268443
167 Ga0268266_10098694
168 Ga0307508_10112252
169 Ga0307514_10017102
170 Ga0307416_100029938
171 Ga0373925_0248582
172 Ga0436365_1767487
173 Ga0436363_0677108
174 Ga0466969_0003990
175 Ga0466965_0018239
176 Ga0466965_0057343
177 Ga0466966_0036359
178 Ga0466961_0009538
179 Ga0466961_0091555
180 Ga0466961_0201959
181 Ga0466963_0040957
182 Ga0466964_0029347
183 Ga0466970_0006637
184 Ga0466970_0007715
185 Ga0466957_0001573
186 Ga0466957_0054014
187 Ga0466959_0025807
188 Ga0466967_0004846
189 Ga0466967_0034636
190 Ga0466967_0074989
191 Ga0466967_0148877
192 Ga0466967_0164833
193 Ga0466967_0422600
194 Ga0495651_0000122
195 Ga0495664_0041430
196 Ga0495656_0006422
197 Ga0495589_0097429
198 Ga0496109_0441778
199 Ga0496110_0078782
200 Ga0501031_0038388
201 Ga0501032_0049714
202 Ga0501032_0124244
203 Ga0501034_0109300
204 Ga0501036_0117279
205 Ga0501038_0018977
206 Ga0501040_0013033
207 Ga0501041_0024718
208 Ga0501046_0165119
209 Ga0501047_0245004
210 Ga0501068_0041748
211 Ga0501069_0022456
212 Ga0501069_0140156
213 Ga0501070_0008831
214 Ga0501070_0020327
215 Ga0501070_0126412
216 Ga0501073_0220486
217 Ga0501074_0015141
218 Ga0501074_0209415
219 Ga0501075_0117538
220 Ga0501076_0028473
221 Ga0501079_0002856
222 Ga0501079_0033249
223 Ga0501079_0138684
224 Ga0501080_0001965
225 Ga0501080_0005128
226 Ga0501080_0021934
227 Ga0501080_0086884
228 Ga0501035_0269942
229 Ga0501044_0009023
230 nmdc:mga03n38_10479_c1
231 nmdc:mga03n38_20495_c1
232 nmdc:mga00v17_37341_c1
233 nmdc:mga00v17_77189_c1
234 nmdc:mga0yw44_36435_c1
235 nmdc:mga06z11_138351_c1
236 nmdc:mga0qj67_95643_c1
237 Ga0500556_0001257
238 Ga0500593_000210
239 Ga0500628_022284
240 Ga0501084_0046351
241 Ga0501084_0062267
242 Ga0501082_0140730
243 Ga0466962_0079409
244 Ga0530510_0009569
245 Ga0530510_0049656
246 2643825542
247 2644089609
248 2644319454
249 2644531538
250 2731908079
251 2740166974
252 2819739666
253 2966924700
254 2984580637
255 2990258329
256 8055175633

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

83

354

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9579 11 349
8f8k-assembly1.cif.gz_A the structure of rv2173 from m. tuberculosis with ipp bound 0.9408 14 351
3lk5-assembly1.cif.gz_A-2 crystal structure of putative geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum 0.9312 11 347
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9234 11 349
8f8k-assembly1.cif.gz_A the structure of rv2173 from m. tuberculosis with ipp bound 0.9046 14 351
ID Description Score Start End Superfamily
af_O53507_1_351_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9687 16 349 1.10.600.10
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9483 11 349 1.10.600.10
af_P9WKH1_23_358_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9265 55 347 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9263 13 349 1.10.600.10
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9142 11 349 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A537VCM4-F1-model_v4 Polyprenyl synthetase family protein 0.9923 1 349 GO:0004659
GO:0008299
AF-A0A537VCM4-F1-model_v4 Polyprenyl synthetase family protein 0.9838 1 349 GO:0004659
GO:0008299
AF-A0A841BMB4-F1-model_v4 Geranylgeranyl diphosphate synthase type I (EC 2.5.1.1, EC 2.5.1.10, EC 2.5.1.29) 0.9816 14 351 GO:0004659
GO:0008299
AF-A0A6L6R6E8-F1-model_v4 Polyprenyl synthetase family protein 0.9807 201 349 GO:0004659
GO:0008299
AF-A0A3N1AX43-F1-model_v4 Geranylgeranyl diphosphate synthase type I 0.9804 14 349 GO:0004659
GO:0008299

Map