F136758

General Info

Members Datasets Scaffolds Average Seq Length
128 88 127 470

Family's Representative Sequence

Representative Sequence 3300005330|Ga0070690_100053274|Ga0070690_1000532741
Length 499
Sequence MPDPTTTELTPARQSDGAPRSTGAEKLDLKKIARQRTATSGTVQIDRLPPHSIEAEQAVLGCILLSPNDCMGEFLARLKSSEVFYDLRHQALFDLMAEMFDKRQAIDLVTLNDRLKDKKISDAVGGIAYLADLPDKVPSAAHLIWYLNIVQEKFLLRRMIKTCTEAVGRAYDYDGEFDVLMDGIETDVLKISESRVQTSTIPIKELVKSAITTIEDYHSRQGALTGVGTGFVDLDKLTTGLHGGEMIVIAARPSVGKTALAMNIAEHVAIEERLPVGVFSLEMTAQSLILRMLCSRSRVNLRNVRDGFLAERDFPKLTGAAGKLAGAPLFIDDSSGLSILQLRAKARRMYQQHGIKLFVIDYLQLVHSTARRAENRQQEIADISNGIKSLAKELNVPVIVLSQLNREVEREKGRPPRLSDLRESGAIEQDADVVGLLYRPASKDDDESANQAPSDAHPVNLLIAKQRNGPADEDVCLTFLKPYTRFESAAKIQADDLPN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
41 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
42 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
43 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
44 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
45 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
46 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
47 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
48 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
49 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
50 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
53 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
54 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
55 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
56 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
57 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
58 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
59 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
60 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
61 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
62 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
63 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
64 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
67 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
68 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
69 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
70 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
71 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
72 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
73 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
74 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
78 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
81 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
82 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
83 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
86 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
87 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
88 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.22
Metatranscriptomes 0
Isolates 0.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.78
Rhizosphere 98.44
Stem 0
Stem Tuber 0
Unclassified 0.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_344993 2162886007 Bacteria 28976
2 rootH1_10095308 3300003323 Bacteria 4582
3 Ga0065704_10070239 3300005289 Bacteria 51505
4 Ga0065707_10081886 3300005295 Bacteria 31208
5 Ga0070690_100022701 3300005330 Bacteria 3841
6 Ga0070690_100053274 3300005330 Bacteria 2588
7 Ga0070666_10011139 3300005335 Bacteria 5636
8 Ga0070689_100009040 3300005340 Bacteria 7053
9 Ga0070689_100033227 3300005340 Bacteria 3929
10 Ga0070689_100082322 3300005340 Bacteria 2528
11 Ga0070714_100008802 3300005435 Bacteria 7892
12 Ga0070694_100033839 3300005444 Bacteria 3367
13 Ga0070708_100004509 3300005445 Bacteria 10958
14 Ga0070681_10032749 3300005458 Bacteria 5218
15 Ga0070686_100017780 3300005544 Bacteria 4161
16 Ga0068855_100055975 3300005563 Bacteria 4629
17 Ga0068855_100179052 3300005563 Bacteria 2398
18 Ga0068857_100000314 3300005577 Bacteria 33509
19 Ga0068856_100127128 3300005614 Bacteria 2552
20 Ga0068856_100148458 3300005614 Bacteria 2352
21 Ga0068864_100122326 3300005618 Bacteria 2328
22 Ga0068863_100024113 3300005841 Bacteria 5804
23 Ga0097621_100020024 3300006237 Bacteria 5151
24 Ga0068871_100011006 3300006358 Bacteria 6628
25 Ga0075428_100002258 3300006844 Bacteria 20864
26 Ga0075435_100052354 3300007076 Bacteria 3291
27 Ga0105240_10001096 3300009093 Bacteria 47799
28 Ga0111539_10103347 3300009094 Bacteria 3344
29 Ga0105248_10000158 3300009177 Bacteria 78672
30 Ga0105249_10043688 3300009553 Bacteria 4076
31 Ga0157370_10078543 3300013104 Bacteria 3108
32 Ga0157372_10064787 3300013307 Bacteria 4101
33 Ga0157375_10000037 3300013308 Bacteria 176523
34 Ga0157375_10004311 3300013308 Bacteria 12342
35 Ga0163163_10000085 3300014325 Bacteria 103280
36 Ga0207707_10023809 3300025912 Bacteria 5355
37 Ga0207695_10046879 3300025913 Bacteria 4578
38 Ga0207694_10008969 3300025924 Bacteria 7550
39 Ga0207670_10003020 3300025936 Bacteria 8883
40 Ga0207670_10006341 3300025936 Bacteria 6554
41 Ga0207670_10017648 3300025936 Bacteria 4317
42 Ga0207711_10000131 3300025941 Bacteria 78961
43 Ga0207712_10054552 3300025961 Bacteria 2807
44 Ga0207702_10043520 3300026078 Unclassified 3770
45 Ga0207674_10005643 3300026116 Bacteria 14841
46 Ga0265338_10001935 3300028800 Bacteria 32306
47 Ga0265338_10002872 3300028800 Bacteria 25145
48 Ga0265338_10024874 3300028800 Bacteria 6101
49 Ga0265338_10050282 3300028800 Viruses 3770
50 Ga0265320_10006579 3300031240 Bacteria 7306
51 Ga0265327_10002437 3300031251 Bacteria 19635
52 Ga0265316_10109968 3300031344 Bacteria 2088
53 Ga0373945_0009969 3300035116 Bacteria 3122
54 Ga0373943_0027948 3300035170 Bacteria 2655
55 Ga0373935_0001747 3300035692 Bacteria 12187
56 Ga0373927_0002809 3300035695 Bacteria 12711
57 Ga0373947_0004556 3300035725 Bacteria 8124
58 Ga0373947_0096558 3300035725 Viruses 1851
59 Ga0373937_0012248 3300036401 Bacteria 7536
60 Ga0373937_0106127 3300036401 Viruses 2611
61 Ga0316584_0000358 3300036712 Bacteria 23520
62 Ga0373925_0001761 3300037068 Bacteria 18120
63 Ga0451577_0012622 3300042876 Bacteria 7927
64 Ga0453684_0000192 3300044712 Bacteria 266757
65 Ga0453684_0001031 3300044712 Bacteria 89065
66 Ga0453684_0003015 3300044712 Bacteria 39160
67 Ga0453684_0005655 3300044712 Bacteria 24563
68 Ga0453684_0016284 3300044712 Bacteria 11642
69 Ga0451576_0067009 3300045051 Bacteria 3737
70 Ga0451576_0210764 3300045051 Bacteria 2029
71 Ga0451576_0377410 3300045051 Unclassified 1486
72 Ga0495653_0135988 3300046463 Bacteria 1734
73 Ga0495639_0000083 3300046475 Bacteria 44825
74 Ga0495639_0000197 3300046475 Bacteria 31744
75 Ga0495664_0157792 3300046477 Bacteria 1376
76 Ga0495608_0016326 3300046511 Bacteria 5137
77 Ga0495618_0000123 3300046514 Bacteria 56679
78 Ga0495618_0001404 3300046514 Bacteria 16217
79 Ga0495628_0000056 3300046516 Bacteria 89432
80 Ga0495628_0089859 3300046516 Bacteria 2378
81 Ga0495628_0149758 3300046516 Bacteria 1778
82 Ga0495630_0003129 3300046517 Bacteria 11478
83 Ga0495630_0008902 3300046517 Bacteria 7207
84 Ga0495630_0022728 3300046517 Bacteria 4632
85 Ga0495630_0027749 3300046517 Unclassified 4204
86 Ga0495666_0000656 3300046526 Bacteria 15577
87 Ga0495666_0005796 3300046526 Bacteria 6225
88 Ga0495666_0014494 3300046526 Bacteria 3925
89 Ga0495652_0000402 3300046529 Bacteria 50341
90 Ga0495665_0000008 3300046531 Bacteria 76775
91 Ga0495640_0000070 3300046533 Bacteria 56728
92 Ga0495640_0076329 3300046533 Bacteria 2236
93 Ga0495586_0000224 3300046535 Bacteria 37564
94 Ga0495586_0016608 3300046535 Bacteria 3915
95 Ga0495587_0000341 3300046536 Bacteria 33244
96 Ga0495645_0009792 3300046543 Bacteria 6706
97 Ga0495645_0126183 3300046543 Bacteria 1798
98 Ga0495622_0026172 3300046557 Bacteria 2725
99 Ga0495667_0003494 3300046559 Bacteria 10533
100 Ga0495634_0001390 3300046642 Bacteria 21776
101 Ga0495634_0064814 3300046642 Bacteria 2422
102 Ga0495634_0087800 3300046642 Bacteria 2023
103 Ga0495635_0000097 3300046663 Bacteria 51563
104 Ga0495599_0045059 3300046678 Bacteria 2765
105 Ga0495646_0045171 3300046680 Viruses 2692
106 Ga0495647_0024607 3300046681 Bacteria 2193
107 Ga0495658_0002126 3300046683 Bacteria 10033
108 Ga0495658_0012078 3300046683 Bacteria 4362
109 Ga0495613_0090824 3300046689 Bacteria 2212
110 Ga0495624_0067865 3300046690 Bacteria 2224
111 Ga0495600_0041134 3300046809 Viruses 3012
112 Ga0495604_0021102 3300047317 Bacteria 5197
113 Ga0495674_0006424 3300047319 Bacteria 11271
114 Ga0495674_0012981 3300047319 Bacteria 7841
115 Ga0495674_0042317 3300047319 Bacteria 4064
116 Ga0495676_0029167 3300047321 Bacteria 4700
117 Ga0495676_0072420 3300047321 Bacteria 2646
118 Ga0495680_0003947 3300047322 Bacteria 14339
119 Ga0495684_0002763 3300047471 Bacteria 13856
120 Ga0495684_0114451 3300047471 Bacteria 2034
121 Ga0496115_0021372 3300048918 Bacteria 4999
122 nmdc:mga0qj67_116807_c1 3300050509 Bacteria 2156
123 nmdc:mga06r32_117629_c1 3300050510 Bacteria 2620
124 nmdc:mga06r32_193289_c1 3300050510 Bacteria 2022
125 nmdc:mga08y16_34927_c1 3300050511 Bacteria 5282
126 nmdc:mga08y16_5250_c1 3300050511 Bacteria 13528
127 Ga0495601_0000517 3300053077 Bacteria 20368

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045051 Ga0451576_0377410 Ga0451576_0377410_265_1467 395
2 3300046477 Ga0495664_0157792 Ga0495664_0157792_126_1352 397
3 3300005335 Ga0070666_10011139 Ga0070666_100111393 402
4 3300046533 Ga0495640_0076329 Ga0495640_0076329_203_1459 411
5 3300028800 Ga0265338_10001935 Ga0265338_1000193524 413
6 3300005340 Ga0070689_100009040 Ga0070689_1000090404 423
7 3300025936 Ga0207670_10006341 Ga0207670_100063414 423
8 3300046526 Ga0495666_0005796 Ga0495666_0005796_3635_4924 423
9 3300050510 nmdc:mga06r32_193289_c1 nmdc:mga06r32_193289_c1_42_1331 423
10 3300046511 Ga0495608_0016326 Ga0495608_0016326_656_1957 425
11 3300046514 Ga0495618_0000123 Ga0495618_0000123_46179_47480 425
12 3300046529 Ga0495652_0000402 Ga0495652_0000402_40573_41874 425
13 3300046533 Ga0495640_0000070 Ga0495640_0000070_43404_44705 425
14 3300046535 Ga0495586_0000224 Ga0495586_0000224_25522_26823 425
15 3300046680 Ga0495646_0045171 Ga0495646_0045171_359_1660 425
16 3300047319 Ga0495674_0012981 Ga0495674_0012981_4942_6243 425
17 3300047471 Ga0495684_0002763 Ga0495684_0002763_3320_4621 425
18 3300050511 nmdc:mga08y16_34927_c1 nmdc:mga08y16_34927_c1_3919_5253 425
19 3300046642 Ga0495634_0087800 Ga0495634_0087800_10_1344 428
20 3300046475 Ga0495639_0000197 Ga0495639_0000197_20348_21688 431
21 3300046526 Ga0495666_0000656 Ga0495666_0000656_4185_5525 431
22 3300005458 Ga0070681_10032749 Ga0070681_100327494 433
23 3300025912 Ga0207707_10023809 Ga0207707_100238092 433
24 3300028800 Ga0265338_10050282 Ga0265338_100502823 438
25 iso_pu_bacteria 2929297113 2929298800 439
26 3300035116 Ga0373945_0009969 Ga0373945_0009969_1557_3014 442
27 3300035170 Ga0373943_0027948 Ga0373943_0027948_883_2340 442
28 3300035692 Ga0373935_0001747 Ga0373935_0001747_7608_9065 442
29 3300035695 Ga0373927_0002809 Ga0373927_0002809_8330_9787 442
30 3300035725 Ga0373947_0004556 Ga0373947_0004556_5589_7046 442
31 3300037068 Ga0373925_0001761 Ga0373925_0001761_4372_5829 442
32 3300046517 Ga0495630_0003129 Ga0495630_0003129_3119_4576 442
33 3300046526 Ga0495666_0014494 Ga0495666_0014494_2337_3794 442
34 3300047321 Ga0495676_0029167 Ga0495676_0029167_981_2438 442
35 3300036712 Ga0316584_0000358 Ga0316584_0000358_2752_4119 445
36 3300044712 Ga0453684_0001031 Ga0453684_0001031_74446_75927 446
37 3300013308 Ga0157375_10000037 Ga0157375_10000037142 449
38 3300046517 Ga0495630_0022728 Ga0495630_0022728_155_1609 451
39 3300046543 Ga0495645_0126183 Ga0495645_0126183_185_1639 451
40 3300046642 Ga0495634_0064814 Ga0495634_0064814_830_2284 451
41 3300046690 Ga0495624_0067865 Ga0495624_0067865_610_2064 451
42 3300005340 Ga0070689_100033227 Ga0070689_1000332272 456
43 3300025936 Ga0207670_10003020 Ga0207670_100030204 456
44 3300013308 Ga0157375_10004311 Ga0157375_100043114 457
45 3300005614 Ga0068856_100127128 Ga0068856_1001271282 458
46 3300045051 Ga0451576_0210764 Ga0451576_0210764_457_1917 458
47 3300044712 Ga0453684_0003015 Ga0453684_0003015_5337_6800 460
48 3300045051 Ga0451576_0067009 Ga0451576_0067009_2078_3529 460
49 3300046463 Ga0495653_0135988 Ga0495653_0135988_145_1608 460
50 3300046516 Ga0495628_0089859 Ga0495628_0089859_815_2278 460
51 3300046517 Ga0495630_0027749 Ga0495630_0027749_536_1999 460
52 3300046531 Ga0495665_0000008 Ga0495665_0000008_27721_29148 460
53 3300047471 Ga0495684_0114451 Ga0495684_0114451_76_1539 460
54 3300046681 Ga0495647_0024607 Ga0495647_0024607_546_1994 461
55 3300046683 Ga0495658_0002126 Ga0495658_0002126_5213_6661 461
56 3300046689 Ga0495613_0090824 Ga0495613_0090824_115_1563 461
57 3300047321 Ga0495676_0072420 Ga0495676_0072420_35_1483 461
58 3300005563 Ga0068855_100055975 Ga0068855_1000559752 462
59 3300005563 Ga0068855_100179052 Ga0068855_1001790522 462
60 3300014325 Ga0163163_10000085 Ga0163163_1000008565 462
61 3300048918 Ga0496115_0021372 Ga0496115_0021372_1615_3111 462
62 3300003323 rootH1_10095308 rootH1_100953082 463
63 3300005435 Ga0070714_100008802 Ga0070714_1000088025 463
64 3300009177 Ga0105248_10000158 Ga0105248_1000015847 464
65 3300013104 Ga0157370_10078543 Ga0157370_100785432 464
66 3300025941 Ga0207711_10000131 Ga0207711_1000013173 464
67 3300046543 Ga0495645_0009792 Ga0495645_0009792_1145_2611 465
68 3300050509 nmdc:mga0qj67_116807_c1 nmdc:mga0qj67_116807_c1_154_1638 465
69 3300050510 nmdc:mga06r32_117629_c1 nmdc:mga06r32_117629_c1_867_2351 465
70 3300044712 Ga0453684_0016284 Ga0453684_0016284_8257_9753 466
71 3300006844 Ga0075428_100002258 Ga0075428_1000022582 467
72 3300050511 nmdc:mga08y16_5250_c1 nmdc:mga08y16_5250_c1_8060_9520 467
73 3300035725 Ga0373947_0096558 Ga0373947_0096558_110_1549 468
74 3300005445 Ga0070708_100004509 Ga0070708_10000450912 469
75 3300005577 Ga0068857_100000314 Ga0068857_1000003145 469
76 3300007076 Ga0075435_100052354 Ga0075435_1000523542 469
77 3300013307 Ga0157372_10064787 Ga0157372_100647872 469
78 3300026116 Ga0207674_10005643 Ga0207674_100056436 469
79 3300036401 Ga0373937_0012248 Ga0373937_0012248_4437_5894 469
80 3300047319 Ga0495674_0042317 Ga0495674_0042317_1611_3065 469
81 3300005330 Ga0070690_100053274 Ga0070690_1000532741 470
82 3300005340 Ga0070689_100082322 Ga0070689_1000823223 470
83 3300005614 Ga0068856_100148458 Ga0068856_1001484583 470
84 3300005618 Ga0068864_100122326 Ga0068864_1001223262 470
85 3300005841 Ga0068863_100024113 Ga0068863_1000241132 470
86 3300006237 Ga0097621_100020024 Ga0097621_1000200243 470
87 3300006358 Ga0068871_100011006 Ga0068871_1000110064 470
88 3300009093 Ga0105240_10001096 Ga0105240_1000109640 470
89 3300025913 Ga0207695_10046879 Ga0207695_100468793 470
90 3300025924 Ga0207694_10008969 Ga0207694_100089694 470
91 3300025936 Ga0207670_10017648 Ga0207670_100176482 470
92 3300026078 Ga0207702_10043520 Ga0207702_100435202 470
93 3300028800 Ga0265338_10024874 Ga0265338_100248743 470
94 3300042876 Ga0451577_0012622 Ga0451577_0012622_5944_7404 470
95 3300005330 Ga0070690_100022701 Ga0070690_1000227012 471
96 3300005444 Ga0070694_100033839 Ga0070694_1000338393 471
97 3300005544 Ga0070686_100017780 Ga0070686_1000177802 471
98 3300009094 Ga0111539_10103347 Ga0111539_101033472 471
99 3300009553 Ga0105249_10043688 Ga0105249_100436882 471
100 3300025961 Ga0207712_10054552 Ga0207712_100545523 471
101 3300031251 Ga0265327_10002437 Ga0265327_100024374 471
102 3300036401 Ga0373937_0106127 Ga0373937_0106127_321_1790 471
103 3300044712 Ga0453684_0000192 Ga0453684_0000192_82341_83798 471
104 3300046475 Ga0495639_0000083 Ga0495639_0000083_30938_32410 471
105 3300046516 Ga0495628_0149758 Ga0495628_0149758_188_1657 471
106 3300046536 Ga0495587_0000341 Ga0495587_0000341_9032_10501 471
107 3300046557 Ga0495622_0026172 Ga0495622_0026172_519_2036 471
108 3300046559 Ga0495667_0003494 Ga0495667_0003494_685_2202 471
109 3300046642 Ga0495634_0001390 Ga0495634_0001390_7163_8632 471
110 3300046663 Ga0495635_0000097 Ga0495635_0000097_5126_6595 471
111 3300046683 Ga0495658_0012078 Ga0495658_0012078_1177_2640 471
112 3300046809 Ga0495600_0041134 Ga0495600_0041134_1273_2742 471
113 3300047317 Ga0495604_0021102 Ga0495604_0021102_860_2329 471
114 3300047322 Ga0495680_0003947 Ga0495680_0003947_9582_11051 471
115 3300053077 Ga0495601_0000517 Ga0495601_0000517_6834_8303 471
116 3300031240 Ga0265320_10006579 Ga0265320_100065795 472
117 3300044712 Ga0453684_0005655 Ga0453684_0005655_14560_16050 472
118 3300046514 Ga0495618_0001404 Ga0495618_0001404_11227_12723 472
119 3300046516 Ga0495628_0000056 Ga0495628_0000056_26363_27859 472
120 3300046517 Ga0495630_0008902 Ga0495630_0008902_2194_3690 472
121 3300046535 Ga0495586_0016608 Ga0495586_0016608_2018_3514 472
122 3300046678 Ga0495599_0045059 Ga0495599_0045059_779_2275 472
123 3300047319 Ga0495674_0006424 Ga0495674_0006424_828_2324 472
124 3300028800 Ga0265338_10002872 Ga0265338_1000287215 473
125 3300031344 Ga0265316_10109968 Ga0265316_101099682 473
126 2162886007 SwRhRL2b_contig_344993 SwRhRL2b_0293.00007710 482
127 3300005289 Ga0065704_10070239 Ga0065704_1007023944 482
128 3300005295 Ga0065707_10081886 Ga0065707_1008188620 482

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00772

DnaB

DnaB-like helicase N terminal domain

48

152

0.96

PF03796

DnaB_C

DnaB-like helicase C terminal domain

226

488

0.94

PF13481

AAA_25

AAA domain

230

409

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jwe-assembly1.cif.gz_A nmr structure of the n-terminal domain of e. coli dnab helicase 0.9379 24 134
2r5u-assembly1.cif.gz_C crystal structure of the n-terminal domain of dnab helicase from mycobacterium tuberculosis 0.9268 25 167
2r5u-assembly1.cif.gz_F crystal structure of the n-terminal domain of dnab helicase from mycobacterium tuberculosis 0.9207 25 166
2r5u-assembly1.cif.gz_C crystal structure of the n-terminal domain of dnab helicase from mycobacterium tuberculosis 0.9141 25 167
2r5u-assembly1.cif.gz_E crystal structure of the n-terminal domain of dnab helicase from mycobacterium tuberculosis 0.9139 25 168
ID Description Score Start End Superfamily
4esvI01 Mainly Alpha;Orthogonal Bundle;DNAb Helicase; Chain A;DNAb Helicase; Chain A 0.95 25 148 1.10.860.10
4esvC01 Mainly Alpha;Orthogonal Bundle;DNAb Helicase; Chain A;DNAb Helicase; Chain A 0.948 24 148 1.10.860.10
4esvC01 Mainly Alpha;Orthogonal Bundle;DNAb Helicase; Chain A;DNAb Helicase; Chain A 0.9407 24 148 1.10.860.10
1jweA00 Mainly Alpha;Orthogonal Bundle;DNAb Helicase; Chain A;DNAb Helicase; Chain A 0.9379 24 134 1.10.860.10
2vyfB01 Mainly Alpha;Orthogonal Bundle;DNAb Helicase; Chain A;DNAb Helicase; Chain A 0.9361 24 148 1.10.860.10
ID Description Score Start End GO Terms
AF-A0A3C0BGY7-F1-model_v4 Replicative DNA helicase 0.968 195 467 GO:0003678
GO:0005524
GO:0005829
GO:0006268
AF-A0A5J4P5R4-F1-model_v4 Replicative DNA helicase (EC 3.6.4.12) 0.9674 207 380 GO:0005524
GO:0005829
GO:0006268
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518
AF-A0A353QHR1-F1-model_v4 Replicative DNA helicase 0.9664 24 132 GO:0003677
GO:0003678
GO:0005524
GO:0005829
GO:0006268
AF-A0A383EL61-F1-model_v4 SF4 helicase domain-containing protein 0.964 214 421 GO:0003678
GO:0005524
GO:0005829
GO:0006268
AF-A0A5T0UIX7-F1-model_v4 AAA family ATPase 0.9633 195 416 GO:0003678
GO:0005524
GO:0005829
GO:0006268

Feature Viewer

pLDDT pTM Quality
80.45 0.63 Medium
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Predicted Structure (AlphaFold2)

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