F130299
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 126 | 76 | 252 | 200 |
Family's Representative Sequence
| Representative Sequence | 3300009148|Ga0105243_10006730|Ga0105243_100067306 |
| Length | 217 |
| Sequence | MTRKGDAVKTTIDRLTPAGVMVLALLREDDMHPYEMIRLMRQRHDDRIVAITNGTLYHTVARLEKSGLLAEVGVDRDGNRPERTTYTLTDAGNHAVEAWVRRELPLLGRPVEFRVALAEAHNLGRDEVVALLSRRLSALAAARDELAEGIRDAYAAATGAASVTAQYFIEVEREHTLLAADHDWLAALLERFATPDFVWGAHEKTDRYQAQREAARS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 2 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 3 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 4 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 5 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 6 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 7 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 8 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 9 | 3300013250 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 | Metagenome | Rhizosphere |
| 10 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 11 | 3300020069 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 12 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 13 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 14 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 15 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 16 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 17 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 18 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 19 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 20 | 3300041451 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG | Metagenome | Rhizoplane |
| 21 | 3300041452 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG | Metagenome | Rhizoplane |
| 22 | 3300041494 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG | Metagenome | Unclassified |
| 23 | 3300041496 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG | Metagenome | Unclassified |
| 24 | 3300041509 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG | Metagenome | Unclassified |
| 25 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 26 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 27 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 28 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 29 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 30 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 31 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 32 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 33 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 34 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 35 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 36 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 37 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 38 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 39 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 40 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 41 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 42 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 43 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 44 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 45 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 46 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 47 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 48 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 49 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 50 | 2643221630 | Microbacterium sp. Root322 | Isolate | Unclassified |
| 51 | 2643221724 | Microbacterium sp. Root280D1 | Isolate | Unclassified |
| 52 | 2747842429 | Microbacterium sp. WCS2014-259 | Isolate | Unclassified |
| 53 | 2757320536 | Microbacterium sp. NFIX05 | Isolate | Unclassified |
| 54 | 2773857758 | Microbacterium chocolatum 1320 | Isolate | Unclassified |
| 55 | 2808606368 | Microbacterium sp. SLBN-1 | Isolate | Unclassified |
| 56 | 2833709550 | Microbacterium sp. 3290 | Isolate | Rhizosphere |
| 57 | 2842888712 | Tsukamurella sp. R-71941 | Isolate | Unclassified |
| 58 | 2852663356 | Microbacterium sp. JAI119 | Isolate | Rhizosphere |
| 59 | 2857720070 | Microbacterium sp. R-72113 | Isolate | Unclassified |
| 60 | 2857723135 | Microbacterium sp. R-72356 | Isolate | Unclassified |
| 61 | 2904509784 | Microbacterium sp. 1676 | Isolate | Rhizosphere |
| 62 | 2908678064 | Microbacterium sp. 1518 | Isolate | Rhizosphere |
| 63 | 2919069694 | Microbacterium sp. 1154 | Isolate | Unclassified |
| 64 | 2928090899 | Microbacterium sp. 1262 | Isolate | Rhizosphere |
| 65 | 2946041624 | Microbacterium natoriense W4I9-1 | Isolate | Rhizosphere |
| 66 | 2946080515 | Microbacterium sp. W4I20 | Isolate | Rhizosphere |
| 67 | 2974294766 | Microbacterium proteolyticum SORGH_AS 209 | Isolate | Unclassified |
| 68 | 2974324384 | Microbacterium sp. SORGH_AS 344 | Isolate | Unclassified |
| 69 | 2977228692 | Microbacterium sp. SORGH_AS 421 | Isolate | Unclassified |
| 70 | 2977236895 | Microbacterium testaceum SORGH_AS 426 | Isolate | Unclassified |
| 71 | 2977264416 | Microbacterium testaceum SORGH_AS 594 | Isolate | Unclassified |
| 72 | 2984580707 | Microbacterium paludicola SORGH_AS919 | Isolate | Aerial Root |
| 73 | 8004025490 | Arthrobacter wenxiniae AETb3-4 | Isolate | Rhizosphere |
| 74 | 8004182704 | Microbacterium paraoxydans ku-mp | Isolate | Unclassified |
| 75 | 8016254467 | Microbacterium sp. SLBN-111 (version 3) | Isolate | Rhizosphere |
| 76 | 8045830549 | Microbacterium yannicii DSM 23203 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 77.78 |
| Metatranscriptomes | 0.79 |
| Isolates | 21.43 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.79 |
| Bulb | 0 |
| Endosphere | 6.35 |
| Nodule | 0 |
| Rhizoplane | 11.11 |
| Rhizosphere | 30.16 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0105243_10006730 | 3300009148 | Bacteria | 8869 |
| 2 | rootH2_10002336 | 3300003320 | Bacteria | 5918 |
| 3 | Ga0065714_10069438 | 3300005288 | Bacteria | 4222 |
| 4 | Ga0075365_10003683 | 3300006038 | Bacteria | 7957 |
| 5 | Ga0075364_10001782 | 3300006051 | Bacteria | 11919 |
| 6 | Ga0075364_10115754 | 3300006051 | Bacteria | 1792 |
| 7 | Ga0075364_10520669 | 3300006051 | Bacteria | 813 |
| 8 | Ga0105244_10056731 | 3300009036 | Bacteria | 1981 |
| 9 | Ga0105243_10474145 | 3300009148 | Bacteria | 1180 |
| 10 | Ga0157371_10030547 | 3300013102 | Bacteria | 3886 |
| 11 | Ga0157370_10003699 | 3300013104 | Bacteria | 17872 |
| 12 | Ga0157370_10468468 | 3300013104 | Bacteria | 1158 |
| 13 | Ga0171462_1005 | 3300013250 | Bacteria | 598379 |
| 14 | Ga0157375_10465529 | 3300013308 | Bacteria | 1429 |
| 15 | Ga0197907_10443655 | 3300020069 | Bacteria | 936 |
| 16 | Ga0209646_1000202 | 3300025246 | Bacteria | 70943 |
| 17 | Ga0207655_1002067 | 3300025728 | Bacteria | 16849 |
| 18 | Ga0207709_10002730 | 3300025935 | Bacteria | 10893 |
| 19 | Ga0207709_10220114 | 3300025935 | Bacteria | 1368 |
| 20 | Ga0207709_10348210 | 3300025935 | Bacteria | 1117 |
| 21 | Ga0307406_10000316 | 3300031901 | Bacteria | 28120 |
| 22 | Ga0307406_10000433 | 3300031901 | Bacteria | 24417 |
| 23 | Ga0307406_10010820 | 3300031901 | Bacteria | 5155 |
| 24 | Ga0307406_10078874 | 3300031901 | Bacteria | 2183 |
| 25 | Ga0307406_10082741 | 3300031901 | Bacteria | 2139 |
| 26 | Ga0307406_10085903 | 3300031901 | Bacteria | 2105 |
| 27 | Ga0307406_10383792 | 3300031901 | Bacteria | 1108 |
| 28 | Ga0307412_10048510 | 3300031911 | Bacteria | 2793 |
| 29 | Ga0307409_100736138 | 3300031995 | Bacteria | 989 |
| 30 | Ga0307416_100229057 | 3300032002 | Bacteria | 1790 |
| 31 | Ga0307414_10107577 | 3300032004 | Bacteria | 2113 |
| 32 | Ga0451791_1626026 | 3300041451 | Bacteria | 985 |
| 33 | Ga0451793_0840274 | 3300041452 | Bacteria | 835 |
| 34 | Ga0451837_1710356 | 3300041494 | Bacteria | 811 |
| 35 | Ga0451839_0845289 | 3300041496 | Bacteria | 1047 |
| 36 | Ga0451843_1045303 | 3300041509 | Bacteria | 1340 |
| 37 | Ga0451853_2958858 | 3300041512 | Bacteria | 989 |
| 38 | Ga0451853_3797007 | 3300041512 | Bacteria | 793 |
| 39 | Ga0466968_0021472 | 3300044735 | Bacteria | 2615 |
| 40 | Ga0466970_0314561 | 3300044765 | Bacteria | 885 |
| 41 | Ga0495645_0053682 | 3300046543 | Bacteria | 2929 |
| 42 | Ga0496104_0059765 | 3300048907 | Bacteria | 3609 |
| 43 | Ga0496104_0253945 | 3300048907 | Bacteria | 1671 |
| 44 | Ga0496105_0085504 | 3300048908 | Bacteria | 2606 |
| 45 | Ga0496108_0080558 | 3300048911 | Bacteria | 2758 |
| 46 | Ga0496109_0064691 | 3300048912 | Bacteria | 3347 |
| 47 | Ga0496110_0088579 | 3300048913 | Bacteria | 2765 |
| 48 | Ga0496111_0251178 | 3300048914 | Bacteria | 1313 |
| 49 | Ga0496113_0075799 | 3300048916 | Bacteria | 2568 |
| 50 | Ga0496114_0162050 | 3300048917 | Bacteria | 1945 |
| 51 | Ga0496114_0170457 | 3300048917 | Bacteria | 1896 |
| 52 | Ga0496114_0202607 | 3300048917 | Bacteria | 1738 |
| 53 | Ga0496115_0293174 | 3300048918 | Bacteria | 1334 |
| 54 | Ga0496117_0000014 | 3300048920 | Bacteria | 584427 |
| 55 | Ga0496117_0000668 | 3300048920 | Bacteria | 54828 |
| 56 | Ga0496117_0036475 | 3300048920 | Bacteria | 3678 |
| 57 | Ga0496118_0120960 | 3300048921 | Bacteria | 1707 |
| 58 | Ga0496119_0000585 | 3300048922 | Bacteria | 49239 |
| 59 | Ga0496119_0002258 | 3300048922 | Bacteria | 21425 |
| 60 | Ga0496119_0003276 | 3300048922 | Bacteria | 16927 |
| 61 | Ga0496119_0187198 | 3300048922 | Bacteria | 1081 |
| 62 | Ga0496119_0225930 | 3300048922 | Bacteria | 955 |
| 63 | Ga0496120_0001893 | 3300048923 | Bacteria | 23232 |
| 64 | Ga0496120_0007395 | 3300048923 | Bacteria | 8178 |
| 65 | Ga0496122_0000420 | 3300048925 | Bacteria | 89921 |
| 66 | Ga0496122_0003436 | 3300048925 | Bacteria | 20830 |
| 67 | Ga0496122_0036788 | 3300048925 | Bacteria | 3951 |
| 68 | Ga0496122_0040192 | 3300048925 | Bacteria | 3722 |
| 69 | Ga0496122_0052922 | 3300048925 | Bacteria | 3066 |
| 70 | Ga0496122_0113058 | 3300048925 | Bacteria | 1775 |
| 71 | Ga0496122_0158611 | 3300048925 | Bacteria | 1384 |
| 72 | Ga0496123_0000241 | 3300048926 | Bacteria | 110078 |
| 73 | Ga0496123_0026458 | 3300048926 | Bacteria | 4344 |
| 74 | Ga0496123_0028928 | 3300048926 | Bacteria | 4091 |
| 75 | Ga0496123_0152854 | 3300048926 | Bacteria | 1242 |
| 76 | Ga0496124_0001389 | 3300048927 | Bacteria | 36286 |
| 77 | Ga0496124_0014800 | 3300048927 | Bacteria | 7524 |
| 78 | Ga0496124_0024110 | 3300048927 | Bacteria | 5539 |
| 79 | Ga0496124_0043892 | 3300048927 | Bacteria | 3840 |
| 80 | Ga0496124_0072003 | 3300048927 | Bacteria | 2863 |
| 81 | Ga0496124_0072984 | 3300048927 | Bacteria | 2841 |
| 82 | Ga0496125_0000085 | 3300048928 | Bacteria | 218570 |
| 83 | Ga0496125_0006019 | 3300048928 | Bacteria | 13269 |
| 84 | Ga0496125_0007845 | 3300048928 | Bacteria | 11282 |
| 85 | Ga0496125_0013959 | 3300048928 | Bacteria | 7856 |
| 86 | Ga0496125_0017263 | 3300048928 | Bacteria | 6892 |
| 87 | Ga0496125_0026233 | 3300048928 | Bacteria | 5315 |
| 88 | Ga0496125_0265585 | 3300048928 | Bacteria | 1073 |
| 89 | Ga0496126_0001538 | 3300048929 | Bacteria | 35479 |
| 90 | Ga0496126_0007302 | 3300048929 | Bacteria | 12137 |
| 91 | Ga0496126_0041121 | 3300048929 | Bacteria | 4281 |
| 92 | Ga0496126_0071976 | 3300048929 | Bacteria | 3076 |
| 93 | Ga0496126_0340211 | 3300048929 | Bacteria | 1229 |
| 94 | Ga0496126_0414551 | 3300048929 | Bacteria | 1090 |
| 95 | Ga0501070_0003514 | 3300049586 | Bacteria | 13553 |
| 96 | nmdc:mga00v17_1120_c1 | 3300050491 | Bacteria | 14057 |
| 97 | nmdc:mga00v17_250486_c1 | 3300050491 | Bacteria | 1148 |
| 98 | nmdc:mga00v17_66406_c1 | 3300050491 | Bacteria | 994 |
| 99 | nmdc:mga07m45_682788_c1 | 3300050496 | Bacteria | 591 |
| 100 | 2644172517 | 2643221630 | Bacteria | 3601215 |
| 101 | 2644678789 | 2643221724 | Bacteria | 3593515 |
| 102 | 2747955207 | 2747842429 | Bacteria | 3914386 |
| 103 | 2758225078 | 2757320536 | Bacteria | 3629334 |
| 104 | 2774379147 | 2773857758 | Bacteria | 3592392 |
| 105 | 2808884473 | 2808606368 | Bacteria | 3174172 |
| 106 | 2833712995 | 2833709550 | Bacteria | 4008291 |
| 107 | 2842892045 | 2842888712 | Bacteria | 4279094 |
| 108 | 2852666476 | 2852663356 | Bacteria | 4090475 |
| 109 | 2857722866 | 2857720070 | Bacteria | 3189373 |
| 110 | 2857726870 | 2857723135 | Bacteria | 4217853 |
| 111 | 2904510585 | 2904509784 | Bacteria | 3520416 |
| 112 | 2908678168 | 2908678064 | Bacteria | 3482747 |
| 113 | 2919070477 | 2919069694 | Bacteria | 3622919 |
| 114 | 2928093280 | 2928090899 | Bacteria | 3158267 |
| 115 | 2946042559 | 2946041624 | Bacteria | 4191385 |
| 116 | 2946082568 | 2946080515 | Bacteria | 4310960 |
| 117 | 2974295167 | 2974294766 | Bacteria | 3767688 |
| 118 | 2974325029 | 2974324384 | Bacteria | 3750535 |
| 119 | 2977230066 | 2977228692 | Bacteria | 3450105 |
| 120 | 2977237867 | 2977236895 | Bacteria | 3569373 |
| 121 | 2977265271 | 2977264416 | Bacteria | 3750737 |
| 122 | 2984583096 | 2984580707 | Bacteria | 3351387 |
| 123 | 8004025506 | 8004025490 | Bacteria | 4327753 |
| 124 | 8004183119 | 8004182704 | Bacteria | 3391155 |
| 125 | 8016255420 | 8016254467 | Bacteria | 3797036 |
| 126 | 8045833354 | 8045830549 | Bacteria | 4444727 |
| 127 | Ga0105243_10006730 | |||
| 128 | rootH2_10002336 | |||
| 129 | Ga0065714_10069438 | |||
| 130 | Ga0075365_10003683 | |||
| 131 | Ga0075364_10001782 | |||
| 132 | Ga0075364_10115754 | |||
| 133 | Ga0075364_10520669 | |||
| 134 | Ga0105244_10056731 | |||
| 135 | Ga0105243_10474145 | |||
| 136 | Ga0157371_10030547 | |||
| 137 | Ga0157370_10003699 | |||
| 138 | Ga0157370_10468468 | |||
| 139 | Ga0171462_1005 | |||
| 140 | Ga0157375_10465529 | |||
| 141 | Ga0197907_10443655 | |||
| 142 | Ga0209646_1000202 | |||
| 143 | Ga0207655_1002067 | |||
| 144 | Ga0207709_10002730 | |||
| 145 | Ga0207709_10220114 | |||
| 146 | Ga0207709_10348210 | |||
| 147 | Ga0307406_10000316 | |||
| 148 | Ga0307406_10000433 | |||
| 149 | Ga0307406_10010820 | |||
| 150 | Ga0307406_10078874 | |||
| 151 | Ga0307406_10082741 | |||
| 152 | Ga0307406_10085903 | |||
| 153 | Ga0307406_10383792 | |||
| 154 | Ga0307412_10048510 | |||
| 155 | Ga0307409_100736138 | |||
| 156 | Ga0307416_100229057 | |||
| 157 | Ga0307414_10107577 | |||
| 158 | Ga0451791_1626026 | |||
| 159 | Ga0451793_0840274 | |||
| 160 | Ga0451837_1710356 | |||
| 161 | Ga0451839_0845289 | |||
| 162 | Ga0451843_1045303 | |||
| 163 | Ga0451853_2958858 | |||
| 164 | Ga0451853_3797007 | |||
| 165 | Ga0466968_0021472 | |||
| 166 | Ga0466970_0314561 | |||
| 167 | Ga0495645_0053682 | |||
| 168 | Ga0496104_0059765 | |||
| 169 | Ga0496104_0253945 | |||
| 170 | Ga0496105_0085504 | |||
| 171 | Ga0496108_0080558 | |||
| 172 | Ga0496109_0064691 | |||
| 173 | Ga0496110_0088579 | |||
| 174 | Ga0496111_0251178 | |||
| 175 | Ga0496113_0075799 | |||
| 176 | Ga0496114_0162050 | |||
| 177 | Ga0496114_0170457 | |||
| 178 | Ga0496114_0202607 | |||
| 179 | Ga0496115_0293174 | |||
| 180 | Ga0496117_0000014 | |||
| 181 | Ga0496117_0000668 | |||
| 182 | Ga0496117_0036475 | |||
| 183 | Ga0496118_0120960 | |||
| 184 | Ga0496119_0000585 | |||
| 185 | Ga0496119_0002258 | |||
| 186 | Ga0496119_0003276 | |||
| 187 | Ga0496119_0187198 | |||
| 188 | Ga0496119_0225930 | |||
| 189 | Ga0496120_0001893 | |||
| 190 | Ga0496120_0007395 | |||
| 191 | Ga0496122_0000420 | |||
| 192 | Ga0496122_0003436 | |||
| 193 | Ga0496122_0036788 | |||
| 194 | Ga0496122_0040192 | |||
| 195 | Ga0496122_0052922 | |||
| 196 | Ga0496122_0113058 | |||
| 197 | Ga0496122_0158611 | |||
| 198 | Ga0496123_0000241 | |||
| 199 | Ga0496123_0026458 | |||
| 200 | Ga0496123_0028928 | |||
| 201 | Ga0496123_0152854 | |||
| 202 | Ga0496124_0001389 | |||
| 203 | Ga0496124_0014800 | |||
| 204 | Ga0496124_0024110 | |||
| 205 | Ga0496124_0043892 | |||
| 206 | Ga0496124_0072003 | |||
| 207 | Ga0496124_0072984 | |||
| 208 | Ga0496125_0000085 | |||
| 209 | Ga0496125_0006019 | |||
| 210 | Ga0496125_0007845 | |||
| 211 | Ga0496125_0013959 | |||
| 212 | Ga0496125_0017263 | |||
| 213 | Ga0496125_0026233 | |||
| 214 | Ga0496125_0265585 | |||
| 215 | Ga0496126_0001538 | |||
| 216 | Ga0496126_0007302 | |||
| 217 | Ga0496126_0041121 | |||
| 218 | Ga0496126_0071976 | |||
| 219 | Ga0496126_0340211 | |||
| 220 | Ga0496126_0414551 | |||
| 221 | Ga0501070_0003514 | |||
| 222 | nmdc:mga00v17_1120_c1 | |||
| 223 | nmdc:mga00v17_250486_c1 | |||
| 224 | nmdc:mga00v17_66406_c1 | |||
| 225 | nmdc:mga07m45_682788_c1 | |||
| 226 | 2644172517 | |||
| 227 | 2644678789 | |||
| 228 | 2747955207 | |||
| 229 | 2758225078 | |||
| 230 | 2774379147 | |||
| 231 | 2808884473 | |||
| 232 | 2833712995 | |||
| 233 | 2842892045 | |||
| 234 | 2852666476 | |||
| 235 | 2857722866 | |||
| 236 | 2857726870 | |||
| 237 | 2904510585 | |||
| 238 | 2908678168 | |||
| 239 | 2919070477 | |||
| 240 | 2928093280 | |||
| 241 | 2946042559 | |||
| 242 | 2946082568 | |||
| 243 | 2974295167 | |||
| 244 | 2974325029 | |||
| 245 | 2977230066 | |||
| 246 | 2977237867 | |||
| 247 | 2977265271 | |||
| 248 | 2984583096 | |||
| 249 | 8004025506 | |||
| 250 | 8004183119 | |||
| 251 | 8016255420 | |||
| 252 | 8045833354 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6abt-assembly1.cif.gz_A | crystal structure of transcription factor from listeria monocytogenes | 0.9104 | 11 | 95 |
| 5h20-assembly1.cif.gz_A-2 | x-ray structure of padr-like transcription factor from bacteroid fragilis | 0.9091 | 12 | 91 |
| 6d57-assembly1.cif.gz_A | campylobacter jejuni ferric uptake regulator s1 metalated | 0.8925 | 24 | 83 |
| 4ejo-assembly1.cif.gz_A-2 | crystal structure of padr family transcriptional regulator from eggerthella lenta dsm 2243 | 0.8864 | 12 | 91 |
| 1xma-assembly1.cif.gz_B-2 | structure of a transcriptional regulator from clostridium thermocellum cth-833 | 0.8804 | 11 | 91 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 5h20A00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9091 | 12 | 91 | 1.10.10.10 |
| 6d57A01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.8925 | 24 | 83 | 1.10.10.10 |
| 5x11A01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.8812 | 6 | 93 | 1.10.10.10 |
| 3l9fD01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.8807 | 12 | 93 | 1.10.10.10 |
| 4g6qB01 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 9 | 81 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-W8YFS1-F1-model_v4 | Transcription regulator PadR N-terminal domain-containing protein | 0.964 | 11 | 95 |
|
| AF-W7BP37-F1-model_v4 | PadR family transcriptional regulator | 0.9559 | 12 | 95 |
|
| AF-A0A7C3XJU8-F1-model_v4 | Threonine synthase (EC 4.2.3.1) | 0.9365 | 11 | 91 |
GO:0003941
GO:0004794 GO:0004795 GO:0006565 GO:0006567 GO:0009088 GO:0009097 |
| AF-A0A6B1R9K7-F1-model_v4 | deleted | 0.9287 | 11 | 102 |
|
| AF-A0A316B4S3-F1-model_v4 | deleted | 0.9166 | 7 | 95 |
|