F130094

General Info

Members Datasets Scaffolds Average Seq Length
126 102 120 318

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100011291|Ga0075431_1000112913
Length 360
Sequence MTTPTMTVEPRSEATAQRTGPALLSIVVPVYFNAINLPDTIPQLLALESRADGLSLELVFVDDGSGDDSLAVLRSFQAQDPDRVRIVKLTRNFGSMAAILAGLTIARGDCVGMIAADLQDPPELFVEMLAHWRAGSKAVFAVRTDREDSASQRLFAGAYYSLIRRFALKDYPPGGFDFFLVDRQVVQDMVRISEKNTNLMSLIFWLGYRPVMLPYVRRARTKGRSRWTLSKKIKLFIDSFVAFSYVPIRFLSATGLLVATTAFAYGAYVFYAWLVNDIPVRGFAPVVLVLAFTAGIQMTMLGVLGEYLWRTLDETRRRPSYVIDEIFDASRTEPSRRDDPRAATSANGADASPTAKATIR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 2511231004 Pseudomonas sp. GM102 Isolate Nodule
4 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
5 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
6 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
7 2945928738 Pseudomonas cedrina W1I11 Isolate Rhizosphere
8 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
9 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
23 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
28 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
47 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
50 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
51 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
54 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
58 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
59 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
60 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
61 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
64 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
65 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
66 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
67 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
68 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
69 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
73 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
74 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
75 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
76 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
77 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
78 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
79 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
80 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
81 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
82 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
83 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
84 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
85 3300049682 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought Metagenome Rhizosphere
86 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
87 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
88 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
90 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
91 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
95 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
98 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
99 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
100 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
101 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.24
Metatranscriptomes 0
Isolates 4.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.14
Nodule 0.79
Rhizoplane 0
Rhizosphere 89.68
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_46124 2162886007 Bacteria 3822
2 MBSR1b_contig_1558208 2162886012 Bacteria 1092
3 Ga0055526_1000067 3300003771 Bacteria 99647
4 Ga0065704_10000882 3300005289 Bacteria 13371
5 Ga0068869_100067953 3300005334 Bacteria 2631
6 Ga0070682_100000015 3300005337 Bacteria 249390
7 Ga0070669_100000010 3300005353 Bacteria 222186
8 Ga0070713_100023326 3300005436 Bacteria 4800
9 Ga0070708_100006707 3300005445 Bacteria 9168
10 Ga0070708_100027165 3300005445 Unclassified 4908
11 Ga0070706_100030464 3300005467 Bacteria 4972
12 Ga0070706_100075854 3300005467 Bacteria 3112
13 Ga0070706_100084714 3300005467 Bacteria 2936
14 Ga0070707_100054235 3300005468 Unclassified 3843
15 Ga0070698_100081832 3300005471 Bacteria 3222
16 Ga0070699_100012557 3300005518 Bacteria 7307
17 Ga0070697_100044792 3300005536 Bacteria 3584
18 Ga0068855_100008297 3300005563 Bacteria 12556
19 Ga0070702_100024416 3300005615 Bacteria 3225
20 Ga0068870_10016143 3300005840 Unclassified 3561
21 Ga0081539_10016066 3300005985 Bacteria 5382
22 Ga0070717_10281932 3300006028 Bacteria 1474
23 Ga0075365_10068851 3300006038 Unclassified 2378
24 Ga0075363_100001748 3300006048 Bacteria 8467
25 Ga0075364_10010365 3300006051 Bacteria 5627
26 Ga0075428_100005038 3300006844 Bacteria 14688
27 Ga0075428_100010813 3300006844 Bacteria 10143
28 Ga0075428_100013092 3300006844 Bacteria 9224
29 Ga0075431_100011291 3300006847 Bacteria 8998
30 Ga0075431_100011809 3300006847 Bacteria 8814
31 Ga0075433_10022317 3300006852 Bacteria 5313
32 Ga0075434_100334718 3300006871 Bacteria 1534
33 Ga0075429_100032250 3300006880 Bacteria 4553
34 Ga0075429_100294232 3300006880 Bacteria 1422
35 Ga0075436_100000585 3300006914 Bacteria 23849
36 Ga0075436_100203592 3300006914 Bacteria 1402
37 Ga0105244_10007013 3300009036 Bacteria 7211
38 Ga0111539_10007190 3300009094 Bacteria 14265
39 Ga0111539_10411389 3300009094 Bacteria 1575
40 Ga0111539_10786822 3300009094 Bacteria 1107
41 Ga0114129_10026277 3300009147 Bacteria 8246
42 Ga0114129_10737020 3300009147 Bacteria 1263
43 Ga0209564_1000182 3300025295 Bacteria 150744
44 Ga0207655_1006125 3300025728 Bacteria 8026
45 Ga0207643_10194951 3300025908 Bacteria 1231
46 Ga0207684_10029140 3300025910 Unclassified 4702
47 Ga0207684_10069152 3300025910 Bacteria 3001
48 Ga0207681_10000011 3300025923 Bacteria 366878
49 Ga0207700_10023272 3300025928 Bacteria 4268
50 Ga0207689_10082847 3300025942 Bacteria 2637
51 Ga0207667_10020699 3300025949 Bacteria 7311
52 Ga0207428_10009707 3300027907 Bacteria 8623
53 Ga0268266_10043612 3300028379 Unclassified 3834
54 Ga0265338_10110626 3300028800 Bacteria 2214
55 Ga0265332_10012707 3300031238 Bacteria 3734
56 Ga0265320_10010838 3300031240 Bacteria 5398
57 Ga0316579_10026350 3300031691 Bacteria 2632
58 Ga0265314_10101930 3300031711 Bacteria 1843
59 Ga0265342_10060084 3300031712 Bacteria 2243
60 Ga0316578_10034691 3300031728 Bacteria 2898
61 Ga0316577_10143283 3300031733 Unclassified 1346
62 Ga0307406_10001619 3300031901 Bacteria 12385
63 Ga0307412_10007922 3300031911 Bacteria 6054
64 Ga0307416_100177563 3300032002 Bacteria 1992
65 Ga0307416_100410144 3300032002 Unclassified 1395
66 Ga0307415_100246803 3300032126 Bacteria 1448
67 Ga0373961_0000383 3300035241 Bacteria 18716
68 Ga0373961_0004067 3300035241 Bacteria 3560
69 Ga0373931_0012220 3300035691 Bacteria 4157
70 Ga0316584_0048799 3300036712 Bacteria 3163
71 Ga0395899_0006272 3300037312 Bacteria 9204
72 Ga0316581_0021936 3300037588 Bacteria 1881
73 Ga0400487_23590 3300039110 Bacteria 11138
74 Ga0439447_000098 3300041407 Bacteria 30413
75 Ga0439466_0000998 3300041411 Bacteria 10880
76 Ga0451577_0077476 3300042876 Bacteria 2964
77 Ga0453683_0000018 3300044673 Bacteria 309212
78 Ga0453683_0026007 3300044673 Unclassified 3716
79 Ga0453684_0014799 3300044712 Bacteria 12429
80 Ga0453684_0036364 3300044712 Bacteria 6787
81 Ga0451576_0000271 3300045051 Bacteria 126815
82 Ga0495648_0036033 3300046524 Bacteria 3199
83 Ga0495670_0015151 3300046691 Bacteria 3793
84 Ga0495636_0006593 3300047318 Bacteria 4565
85 Ga0495673_0000911 3300047469 Bacteria 27003
86 Ga0496125_0026753 3300048928 Bacteria 5243
87 Ga0501068_0055572 3300049584 Bacteria 2398
88 Ga0501071_0139831 3300049587 Bacteria 1803
89 Ga0501073_0090551 3300049589 Unclassified 2126
90 Ga0501075_0022425 3300049591 Bacteria 4611
91 Ga0501075_0060468 3300049591 Bacteria 2855
92 Ga0501076_0155915 3300049592 Bacteria 1859
93 Ga0501076_0203780 3300049592 Bacteria 1616
94 Ga0501077_0000052 3300049593 Bacteria 59284
95 Ga0501217_013759 3300049661 Bacteria 1819
96 Ga0501240_000431 3300049673 Bacteria 3386
97 Ga0501252_000447 3300049682 Bacteria 3136
98 Ga0501079_0031024 3300049741 Bacteria 4108
99 Ga0501080_0008135 3300049742 Bacteria 9501
100 Ga0501035_0000106 3300049822 Bacteria 104085
101 Ga0501045_0101631 3300049824 Bacteria 2129
102 nmdc:mga03n38_8728_c1 3300050490 Bacteria 3653
103 nmdc:mga00v17_4748_c1 3300050491 Bacteria 7109
104 nmdc:mga05p37_125112_c1 3300050507 Bacteria 3157
105 nmdc:mga09592_14814_c1 3300050508 Bacteria 6364
106 nmdc:mga09592_342558_c1 3300050508 Bacteria 1294
107 nmdc:mga06r32_11583_c1 3300050510 Bacteria 7942
108 nmdc:mga06r32_67161_c1 3300050510 Bacteria 3461
109 nmdc:mga08y16_332980_c1 3300050511 Bacteria 1561
110 nmdc:mga08y16_35244_c1 3300050511 Bacteria 5256
111 nmdc:mga08y16_563849_c1 3300050511 Bacteria 1151
112 nmdc:mga0n895_20160_c1 3300050512 Bacteria 6212
113 nmdc:mga08x19_255_c1 3300050514 Bacteria 40439
114 nmdc:mga08x19_333039_c1 3300050514 Bacteria 1058
115 nmdc:mga0a205_20471_c1 3300050515 Bacteria 6242
116 Ga0500642_0061695 3300053130 Bacteria 1685
117 Ga0500658_0003820 3300053134 Bacteria 5666
118 Ga0501084_0380430 3300054114 Bacteria 1193
119 Ga0501082_0000731 3300060353 Bacteria 28878
120 Ga0501082_0168105 3300060353 Bacteria 1906

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005471 Ga0070698_100081832 Ga0070698_1000818323 274
2 3300035241 Ga0373961_0004067 Ga0373961_0004067_2138_3106 274
3 3300031901 Ga0307406_10001619 Ga0307406_1000161913 278
4 3300053130 Ga0500642_0061695 Ga0500642_0061695_227_1150 284
5 3300003771 Ga0055526_1000067 Ga0055526_1000067116 286
6 3300025295 Ga0209564_1000182 Ga0209564_100018223 286
7 3300031911 Ga0307412_10007922 Ga0307412_100079223 287
8 3300032002 Ga0307416_100177563 Ga0307416_1001775632 287
9 3300041407 Ga0439447_000098 Ga0439447_000098_9346_10272 287
10 3300041411 Ga0439466_0000998 Ga0439466_0000998_2287_3213 287
11 3300046524 Ga0495648_0036033 Ga0495648_0036033_1078_2004 287
12 3300047469 Ga0495673_0000911 Ga0495673_0000911_6295_7221 287
13 3300049592 Ga0501076_0203780 Ga0501076_0203780_726_1595 287
14 3300049673 Ga0501240_000431 Ga0501240_000431_2106_3032 287
15 3300049682 Ga0501252_000447 Ga0501252_000447_2051_2977 287
16 3300050510 nmdc:mga06r32_11583_c1 nmdc:mga06r32_11583_c1_7059_7928 287
17 3300006048 Ga0075363_100001748 Ga0075363_1000017482 289
18 3300006051 Ga0075364_10010365 Ga0075364_100103652 289
19 3300049661 Ga0501217_013759 Ga0501217_013759_469_1374 290
20 3300050490 nmdc:mga03n38_8728_c1 nmdc:mga03n38_8728_c1_1587_2660 296
21 3300050491 nmdc:mga00v17_4748_c1 nmdc:mga00v17_4748_c1_4747_5820 296
22 3300044673 Ga0453683_0026007 Ga0453683_0026007_355_1305 298
23 3300028800 Ga0265338_10110626 Ga0265338_101106262 299
24 3300031238 Ga0265332_10012707 Ga0265332_100127073 299
25 3300031711 Ga0265314_10101930 Ga0265314_101019302 299
26 3300031712 Ga0265342_10060084 Ga0265342_100600842 299
27 3300005436 Ga0070713_100023326 Ga0070713_1000233262 300
28 3300005467 Ga0070706_100075854 Ga0070706_1000758541 300
29 3300025928 Ga0207700_10023272 Ga0207700_100232722 300
30 3300032002 Ga0307416_100410144 Ga0307416_1004101442 301
31 3300005467 Ga0070706_100030464 Ga0070706_1000304643 302
32 3300005468 Ga0070707_100054235 Ga0070707_1000542352 302
33 3300005536 Ga0070697_100044792 Ga0070697_1000447922 302
34 3300025910 Ga0207684_10029140 Ga0207684_100291403 302
35 3300049587 Ga0501071_0139831 Ga0501071_0139831_139_1128 302
36 3300049591 Ga0501075_0060468 Ga0501075_0060468_1457_2446 302
37 3300049592 Ga0501076_0155915 Ga0501076_0155915_710_1699 302
38 3300049824 Ga0501045_0101631 Ga0501045_0101631_1014_2003 302
39 iso_pu_bacteria 2511231004 2511255000 302
40 iso_pu_bacteria 2511231026 2511386523 302
41 iso_pu_bacteria 2945928738 2945929016 302
42 3300049584 Ga0501068_0055572 Ga0501068_0055572_1388_2314 303
43 3300049591 Ga0501075_0022425 Ga0501075_0022425_1172_2098 303
44 3300049593 Ga0501077_0000052 Ga0501077_0000052_53766_54692 303
45 3300049742 Ga0501080_0008135 Ga0501080_0008135_2782_3708 303
46 3300060353 Ga0501082_0000731 Ga0501082_0000731_12568_13494 303
47 3300005445 Ga0070708_100006707 Ga0070708_1000067072 304
48 3300005563 Ga0068855_100008297 Ga0068855_10000829710 305
49 3300006844 Ga0075428_100010813 Ga0075428_1000108133 305
50 3300009094 Ga0111539_10786822 Ga0111539_107868221 305
51 3300025949 Ga0207667_10020699 Ga0207667_100206996 305
52 3300048928 Ga0496125_0026753 Ga0496125_0026753_2346_3269 305
53 3300050511 nmdc:mga08y16_563849_c1 nmdc:mga08y16_563849_c1_69_992 305
54 3300005615 Ga0070702_100024416 Ga0070702_1000244162 306
55 3300006914 Ga0075436_100000585 Ga0075436_1000005854 307
56 3300042876 Ga0451577_0077476 Ga0451577_0077476_1433_2356 307
57 3300044673 Ga0453683_0000018 Ga0453683_0000018_53645_54568 307
58 3300044712 Ga0453684_0036364 Ga0453684_0036364_4843_5766 307
59 3300045051 Ga0451576_0000271 Ga0451576_0000271_92932_93855 307
60 3300050514 nmdc:mga08x19_255_c1 nmdc:mga08x19_255_c1_17081_18019 307
61 3300053134 Ga0500658_0003820 Ga0500658_0003820_4064_5026 307
62 iso_pu_bacteria 2938649242 2938654617 307
63 iso_pu_bacteria 2945991243 2945996200 307
64 3300005353 Ga0070669_100000010 Ga0070669_10000001022 308
65 3300025923 Ga0207681_10000011 Ga0207681_10000011160 308
66 3300037312 Ga0395899_0006272 Ga0395899_0006272_7054_7983 308
67 3300031240 Ga0265320_10010838 Ga0265320_100108383 309
68 3300035241 Ga0373961_0000383 Ga0373961_0000383_5537_6505 309
69 3300005337 Ga0070682_100000015 Ga0070682_10000001526 311
70 3300005840 Ga0068870_10016143 Ga0068870_100161432 311
71 3300006847 Ga0075431_100011809 Ga0075431_1000118097 311
72 3300006880 Ga0075429_100032250 Ga0075429_1000322505 311
73 3300009036 Ga0105244_10007013 Ga0105244_100070133 311
74 3300025728 Ga0207655_1006125 Ga0207655_10061252 311
75 3300025908 Ga0207643_10194951 Ga0207643_101949511 311
76 3300044712 Ga0453684_0014799 Ga0453684_0014799_5310_6257 311
77 3300049741 Ga0501079_0031024 Ga0501079_0031024_341_1351 311
78 3300050508 nmdc:mga09592_14814_c1 nmdc:mga09592_14814_c1_2099_3058 311
79 3300050508 nmdc:mga09592_342558_c1 nmdc:mga09592_342558_c1_102_1055 311
80 3300054114 Ga0501084_0380430 Ga0501084_0380430_36_1046 311
81 3300060353 Ga0501082_0168105 Ga0501082_0168105_802_1812 311
82 2162886012 MBSR1b_contig_1558208 MBSR1b_0661.00005410 312
83 3300005334 Ga0068869_100067953 Ga0068869_1000679533 312
84 3300005445 Ga0070708_100027165 Ga0070708_1000271655 312
85 3300005467 Ga0070706_100084714 Ga0070706_1000847144 312
86 3300005518 Ga0070699_100012557 Ga0070699_1000125572 312
87 3300006028 Ga0070717_10281932 Ga0070717_102819321 312
88 3300006844 Ga0075428_100005038 Ga0075428_1000050388 312
89 3300006880 Ga0075429_100294232 Ga0075429_1002942321 312
90 3300006914 Ga0075436_100203592 Ga0075436_1002035922 312
91 3300009147 Ga0114129_10737020 Ga0114129_107370202 312
92 3300025910 Ga0207684_10069152 Ga0207684_100691524 312
93 3300025942 Ga0207689_10082847 Ga0207689_100828473 312
94 3300032126 Ga0307415_100246803 Ga0307415_1002468031 312
95 3300047318 Ga0495636_0006593 Ga0495636_0006593_189_1169 312
96 3300049589 Ga0501073_0090551 Ga0501073_0090551_219_1175 312
97 3300049822 Ga0501035_0000106 Ga0501035_0000106_39184_40167 312
98 3300050514 nmdc:mga08x19_333039_c1 nmdc:mga08x19_333039_c1_51_1028 312
99 3300006038 Ga0075365_10068851 Ga0075365_100688512 313
100 3300031691 Ga0316579_10026350 Ga0316579_100263502 313
101 3300031728 Ga0316578_10034691 Ga0316578_100346913 313
102 3300035691 Ga0373931_0012220 Ga0373931_0012220_309_1268 313
103 3300036712 Ga0316584_0048799 Ga0316584_0048799_1566_2528 313
104 3300037588 Ga0316581_0021936 Ga0316581_0021936_578_1540 313
105 3300039110 Ga0400487_23590 Ga0400487_23590_8693_9667 313
106 3300005985 Ga0081539_10016066 Ga0081539_100160663 314
107 3300006844 Ga0075428_100013092 Ga0075428_1000130924 317
108 3300006847 Ga0075431_100011291 Ga0075431_1000112913 317
109 3300006852 Ga0075433_10022317 Ga0075433_100223173 317
110 3300006871 Ga0075434_100334718 Ga0075434_1003347182 317
111 3300009094 Ga0111539_10007190 Ga0111539_100071905 317
112 3300009094 Ga0111539_10411389 Ga0111539_104113892 317
113 3300009147 Ga0114129_10026277 Ga0114129_100262773 317
114 3300027907 Ga0207428_10009707 Ga0207428_100097075 317
115 3300028379 Ga0268266_10043612 Ga0268266_100436123 317
116 3300031733 Ga0316577_10143283 Ga0316577_101432832 317
117 3300046691 Ga0495670_0015151 Ga0495670_0015151_948_2033 317
118 3300050507 nmdc:mga05p37_125112_c1 nmdc:mga05p37_125112_c1_1871_2953 317
119 3300050510 nmdc:mga06r32_67161_c1 nmdc:mga06r32_67161_c1_826_1908 317
120 3300050511 nmdc:mga08y16_332980_c1 nmdc:mga08y16_332980_c1_267_1349 317
121 3300050511 nmdc:mga08y16_35244_c1 nmdc:mga08y16_35244_c1_1572_2615 317
122 3300050512 nmdc:mga0n895_20160_c1 nmdc:mga0n895_20160_c1_387_1469 317
123 3300050515 nmdc:mga0a205_20471_c1 nmdc:mga0a205_20471_c1_2579_3661 317
124 iso_pu_bacteria 2786546940 2788437126 317
125 2162886007 SwRhRL2b_contig_46124 SwRhRL2b_0198.00004950 319
126 3300005289 Ga0065704_10000882 Ga0065704_1000088211 319

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00535

Glycos_transf_2

Glycosyl transferase family 2

25

190

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5eke-assembly1.cif.gz_A structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (f215a mutant) 0.7436 8 314
5ekp-assembly1.cif.gz_A structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.743 8 314
5ekp-assembly1.cif.gz_D structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.7247 8 313
5eke-assembly1.cif.gz_D structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (f215a mutant) 0.7241 7 318
5ekp-assembly1.cif.gz_B structure of the polyisoprenyl-phosphate glycosyltransferase gtrb (wt) 0.7229 8 319
ID Description Score Start End Superfamily
af_P77293_1_188_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8788 10 196 3.90.550.10
af_E7EZ14_14_198_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.8772 235 299 1.20.140.150
af_Q2G2T7_1_208_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8713 10 212 3.90.550.10
af_P77293_1_188_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8657 10 196 3.90.550.10
af_Q2G2T7_1_208_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8479 10 212 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A6N6X2J4-F1-model_v4 deleted 0.9617 10 135
AF-A0A376RH89-F1-model_v4 Undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase (EC 2.4.2.53) 0.9493 9 122 GO:0005886
GO:0099621
AF-A0A6N6X2J4-F1-model_v4 deleted 0.9469 10 135
AF-R6PDZ6-F1-model_v4 deleted 0.9466 1 121
AF-A0A537TIC0-F1-model_v4 Glycosyltransferase family 2 protein 0.9458 32 202 GO:0005886
GO:0016757

Feature Viewer

pLDDT pTM Quality
88.47 0.81 High
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Predicted Structure (AlphaFold2)

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