F127131

General Info

Members Datasets Scaffolds Average Seq Length
125 107 122 364

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10007956|Ga0265327_100079562
Length 399
Sequence MDTLTAQKSFAKPASTARVAPRLGIIGGGQLARMTAVAALQLGCDVIVLERNDHSPAAQVATRCLVGDWNNPDALLKLASQVDVVSIENEFINTDSLSAIEKSGHRLSPSTRTLHCVQDKLLQKQCLQKAGLATTRFVGVENQQQLFEVTREFGLPLVLKTRRNGYDGKGNFTIRTEADIAEGWRVLNGDRNGLYVEAFCNYRAELAVIITRGQDGAMAVYPVVETVQRDHICHIVRAPAAVSPRAEEKAHQMARAAIEAIDGVGSFGIELFVTGNDEVMINELAPRVHNSGHYTIEGCVCSQFENHVRALFGWPLGATAMVGPAAVMVNLLGASQGSGAPLGMDDALQVAGAHVHIYGKAMSARGRKMGHVTALGADIARAEATAQNAAGKIFFGATT

Samples

Sample ID Description Type Environment
1 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
2 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
3 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
4 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
5 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
45 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
77 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
78 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
82 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
86 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
87 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
102 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
103 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
104 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.6
Metatranscriptomes 0
Isolates 2.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.6
Nodule 0
Rhizoplane 5.6
Rhizosphere 84.8
Stem 0
Stem Tuber 0
Unclassified 8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24752J21851_1000196 3300001976 Bacteria 8408
2 JGI24751J29686_10000127 3300002459 Bacteria 38458
3 JGI24751J29686_10000799 3300002459 Bacteria 7365
4 rootL2_10019140 3300003322 Bacteria 2042
5 rootL2_10059478 3300003322 Bacteria 6225
6 Ga0055531_10000256 3300003794 Bacteria 56574
7 Ga0065704_10079607 3300005289 Bacteria 4118
8 Ga0070658_10000042 3300005327 Bacteria 132351
9 Ga0070658_10215747 3300005327 Bacteria 1622
10 Ga0070683_100001193 3300005329 Bacteria 19767
11 Ga0070683_100176801 3300005329 Bacteria 2026
12 Ga0070670_100001870 3300005331 Bacteria 17152
13 Ga0070668_100313269 3300005347 Bacteria 1319
14 Ga0070667_100002790 3300005367 Bacteria 15088
15 Ga0070667_100296270 3300005367 Bacteria 1456
16 Ga0070714_100005003 3300005435 Bacteria 10077
17 Ga0070713_100000769 3300005436 Bacteria 20534
18 Ga0070663_100189104 3300005455 Bacteria 1601
19 Ga0070681_10308515 3300005458 Bacteria 1492
20 Ga0070706_100007131 3300005467 Bacteria 10510
21 Ga0070707_100006898 3300005468 Bacteria 10518
22 Ga0070684_100001432 3300005535 Bacteria 17196
23 Ga0070697_100239833 3300005536 Unclassified 1548
24 Ga0070686_100032048 3300005544 Bacteria 3220
25 Ga0068855_100427716 3300005563 Bacteria 1447
26 Ga0070664_100006744 3300005564 Bacteria 9256
27 Ga0068857_100000294 3300005577 Bacteria 34550
28 Ga0068856_100000378 3300005614 Bacteria 48711
29 Ga0068852_100013752 3300005616 Bacteria 6203
30 Ga0068864_100000080 3300005618 Bacteria 102508
31 Ga0068863_100000087 3300005841 Bacteria 102508
32 Ga0068858_100012551 3300005842 Bacteria 7989
33 Ga0068862_100000101 3300005844 Bacteria 102508
34 Ga0075432_10004770 3300006058 Bacteria 4615
35 Ga0068871_100212673 3300006358 Unclassified 1673
36 Ga0105251_10000680 3300009011 Bacteria 31350
37 Ga0105240_10025230 3300009093 Bacteria 7817
38 Ga0105247_10039112 3300009101 Bacteria 2897
39 Ga0114129_10099687 3300009147 Bacteria 4020
40 Ga0105248_10000029 3300009177 Bacteria 223366
41 Ga0105249_10000024 3300009553 Bacteria 232947
42 Ga0157371_10087173 3300013102 Bacteria 2211
43 Ga0163162_10014561 3300013306 Bacteria 7686
44 Ga0163163_10095204 3300014325 Bacteria 2997
45 Ga0157379_10004515 3300014968 Bacteria 11937
46 Ga0182005_1000193 3300015265 Bacteria 41187
47 Ga0207713_1005018 3300025735 Bacteria 8425
48 Ga0207705_10000007 3300025909 Bacteria 597387
49 Ga0207705_10116126 3300025909 Bacteria 1981
50 Ga0207684_10006209 3300025910 Bacteria 10909
51 Ga0207695_10070481 3300025913 Bacteria 3573
52 Ga0207646_10063132 3300025922 Unclassified 3307
53 Ga0207650_10001439 3300025925 Bacteria 17134
54 Ga0207700_10002946 3300025928 Bacteria 9817
55 Ga0207664_10004108 3300025929 Bacteria 9828
56 Ga0207644_10017951 3300025931 Bacteria 4784
57 Ga0207711_10000004 3300025941 Bacteria 870636
58 Ga0207711_10259626 3300025941 Bacteria 1596
59 Ga0207661_10005245 3300025944 Bacteria 9113
60 Ga0207667_10275436 3300025949 Bacteria 1720
61 Ga0207712_10000034 3300025961 Bacteria 202320
62 Ga0207668_10241841 3300025972 Bacteria 1461
63 Ga0207658_10000327 3300025986 Bacteria 48072
64 Ga0207703_10066764 3300026035 Bacteria 2960
65 Ga0207639_10090968 3300026041 Bacteria 2442
66 Ga0207702_10001761 3300026078 Bacteria 21314
67 Ga0207641_10000010 3300026088 Bacteria 402193
68 Ga0207641_10103871 3300026088 Bacteria 2508
69 Ga0207676_10000036 3300026095 Bacteria 198447
70 Ga0207674_10001031 3300026116 Bacteria 36347
71 Ga0207674_10287503 3300026116 Bacteria 1593
72 Ga0209974_10005114 3300027876 Bacteria 4632
73 Ga0207428_10096631 3300027907 Bacteria 2287
74 Ga0268265_10000059 3300028380 Bacteria 152531
75 Ga0265327_10007956 3300031251 Bacteria 8020
76 Ga0307405_10031491 3300031731 Bacteria 3123
77 Ga0307412_10005229 3300031911 Bacteria 7277
78 Ga0307412_10015840 3300031911 Bacteria 4477
79 Ga0307416_100232263 3300032002 Bacteria 1779
80 Ga0307415_100145616 3300032126 Bacteria 1816
81 Ga0316584_0016041 3300036712 Bacteria 5366
82 Ga0395900_0073148 3300037418 Bacteria 3524
83 Ga0400483_099821 3300039062 Bacteria 1433
84 Ga0439462_0000063 3300042015 Bacteria 15632
85 Ga0451577_0000440 3300042876 Bacteria 73504
86 Ga0451577_0050130 3300042876 Bacteria 3727
87 Ga0451577_0107635 3300042876 Unclassified 2492
88 Ga0453684_0000004 3300044712 Bacteria 1469893
89 Ga0453684_0000008 3300044712 Bacteria 1200052
90 Ga0451576_0254158 3300045051 Bacteria 1837
91 Ga0495605_0085074 3300046474 Bacteria 1474
92 Ga0495667_0154536 3300046559 Bacteria 1477
93 Ga0495674_0095670 3300047319 Bacteria 2532
94 Ga0495675_0042336 3300047444 Bacteria 2901
95 Ga0496103_0010215 3300048906 Bacteria 5553
96 Ga0496105_0342566 3300048908 Bacteria 1195
97 Ga0496107_0122504 3300048910 Bacteria 1916
98 Ga0496112_0021545 3300048915 Bacteria 6131
99 Ga0496114_0019167 3300048917 Bacteria 5544
100 Ga0496114_0367997 3300048917 Bacteria 1272
101 Ga0496115_0160736 3300048918 Bacteria 1856
102 Ga0496117_0023280 3300048920 Bacteria 4942
103 Ga0496118_0000797 3300048921 Bacteria 50370
104 Ga0496121_0000007 3300048924 Bacteria 942516
105 Ga0496122_0011726 3300048925 Bacteria 8833
106 Ga0496126_0009875 3300048929 Bacteria 10095
107 Ga0496126_0049767 3300048929 Bacteria 3824
108 Ga0501033_0119652 3300049570 Bacteria 1912
109 Ga0501034_0008273 3300049571 Bacteria 11008
110 Ga0501034_0143425 3300049571 Bacteria 2367
111 Ga0501034_0245989 3300049571 Bacteria 1734
112 Ga0501040_0043031 3300049576 Bacteria 3078
113 Ga0501043_0099077 3300049579 Bacteria 2291
114 Ga0501047_0061385 3300049581 Bacteria 3627
115 Ga0501070_0348333 3300049586 Bacteria 1202
116 Ga0501075_0042957 3300049591 Bacteria 3390
117 Ga0501076_0076416 3300049592 Bacteria 2686
118 Ga0501224_010861 3300049664 Bacteria 1337
119 Ga0501044_0315036 3300049823 Bacteria 1490
120 Ga0501044_0318704 3300049823 Bacteria 1480
121 nmdc:mga07m45_17500_c1 3300050496 Bacteria 3850
122 Ga0501082_0278262 3300060353 Bacteria 1457

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046474 Ga0495605_0085074 Ga0495605_0085074_570_1451 291
2 3300049586 Ga0501070_0348333 Ga0501070_0348333_133_1176 307
3 3300009147 Ga0114129_10099687 Ga0114129_100996875 315
4 3300005468 Ga0070707_100006898 Ga0070707_1000068987 319
5 3300005536 Ga0070697_100239833 Ga0070697_1002398331 319
6 3300025922 Ga0207646_10063132 Ga0207646_100631324 319
7 3300005467 Ga0070706_100007131 Ga0070706_1000071314 321
8 3300025910 Ga0207684_10006209 Ga0207684_100062095 321
9 3300039062 Ga0400483_099821 Ga0400483_099821_411_1421 324
10 3300048918 Ga0496115_0160736 Ga0496115_0160736_455_1645 332
11 3300060353 Ga0501082_0278262 Ga0501082_0278262_82_1167 333
12 3300046559 Ga0495667_0154536 Ga0495667_0154536_10_1110 334
13 3300049579 Ga0501043_0099077 Ga0501043_0099077_1178_2278 334
14 3300005458 Ga0070681_10308515 Ga0070681_103085151 336
15 3300031911 Ga0307412_10015840 Ga0307412_100158403 336
16 3300032002 Ga0307416_100232263 Ga0307416_1002322632 336
17 3300036712 Ga0316584_0016041 Ga0316584_0016041_1543_2652 338
18 iso_pu_bacteria 2818991442 2819574230 340
19 3300005329 Ga0070683_100001193 Ga0070683_10000119317 341
20 3300005329 Ga0070683_100176801 Ga0070683_1001768012 341
21 3300005435 Ga0070714_100005003 Ga0070714_1000050034 341
22 3300005436 Ga0070713_100000769 Ga0070713_1000007694 341
23 3300005535 Ga0070684_100001432 Ga0070684_10000143223 341
24 3300005564 Ga0070664_100006744 Ga0070664_1000067447 341
25 3300005577 Ga0068857_100000294 Ga0068857_10000029422 341
26 3300005614 Ga0068856_100000378 Ga0068856_10000037818 341
27 3300025928 Ga0207700_10002946 Ga0207700_100029468 341
28 3300025929 Ga0207664_10004108 Ga0207664_100041082 341
29 3300025944 Ga0207661_10005245 Ga0207661_100052458 341
30 3300026078 Ga0207702_10001761 Ga0207702_100017615 341
31 3300026116 Ga0207674_10001031 Ga0207674_1000103121 341
32 3300047319 Ga0495674_0095670 Ga0495674_0095670_1282_2460 341
33 3300049571 Ga0501034_0143425 Ga0501034_0143425_654_1853 343
34 3300049591 Ga0501075_0042957 Ga0501075_0042957_1546_2631 343
35 3300049592 Ga0501076_0076416 Ga0501076_0076416_274_1359 343
36 3300003322 rootL2_10059478 rootL2_100594782 344
37 3300003794 Ga0055531_10000256 Ga0055531_1000025615 344
38 3300013102 Ga0157371_10087173 Ga0157371_100871732 344
39 3300015265 Ga0182005_1000193 Ga0182005_100019331 344
40 3300048924 Ga0496121_0000007 Ga0496121_0000007_97118_98236 344
41 iso_pu_bacteria 2882806704 2882809377 345
42 3300049823 Ga0501044_0318704 Ga0501044_0318704_137_1219 346
43 iso_pu_bacteria 2919138771 2919138935 346
44 3300003322 rootL2_10019140 rootL2_100191401 348
45 3300031731 Ga0307405_10031491 Ga0307405_100314916 349
46 3300031911 Ga0307412_10005229 Ga0307412_100052297 349
47 3300042876 Ga0451577_0107635 Ga0451577_0107635_65_1195 349
48 3300044712 Ga0453684_0000008 Ga0453684_0000008_569208_570338 349
49 3300049664 Ga0501224_010861 Ga0501224_010861_51_1118 349
50 3300002459 JGI24751J29686_10000127 JGI24751J29686_1000012740 350
51 3300002459 JGI24751J29686_10000799 JGI24751J29686_100007998 350
52 3300005327 Ga0070658_10000042 Ga0070658_1000004228 350
53 3300005327 Ga0070658_10215747 Ga0070658_102157472 350
54 3300005367 Ga0070667_100296270 Ga0070667_1002962702 350
55 3300005455 Ga0070663_100189104 Ga0070663_1001891042 350
56 3300005563 Ga0068855_100427716 Ga0068855_1004277162 350
57 3300005616 Ga0068852_100013752 Ga0068852_1000137527 350
58 3300005842 Ga0068858_100012551 Ga0068858_1000125514 350
59 3300006058 Ga0075432_10004770 Ga0075432_100047702 350
60 3300006358 Ga0068871_100212673 Ga0068871_1002126732 350
61 3300009093 Ga0105240_10025230 Ga0105240_100252307 350
62 3300025909 Ga0207705_10000007 Ga0207705_10000007373 350
63 3300025909 Ga0207705_10116126 Ga0207705_101161262 350
64 3300025913 Ga0207695_10070481 Ga0207695_100704813 350
65 3300025931 Ga0207644_10017951 Ga0207644_100179514 350
66 3300025941 Ga0207711_10259626 Ga0207711_102596261 350
67 3300025949 Ga0207667_10275436 Ga0207667_102754362 350
68 3300026035 Ga0207703_10066764 Ga0207703_100667642 350
69 3300026041 Ga0207639_10090968 Ga0207639_100909683 350
70 3300026116 Ga0207674_10287503 Ga0207674_102875032 350
71 3300027907 Ga0207428_10096631 Ga0207428_100966312 350
72 3300032126 Ga0307415_100145616 Ga0307415_1001456162 350
73 3300042015 Ga0439462_0000063 Ga0439462_0000063_4707_5759 350
74 3300042876 Ga0451577_0000440 Ga0451577_0000440_10328_11464 350
75 3300042876 Ga0451577_0050130 Ga0451577_0050130_2563_3690 350
76 3300044712 Ga0453684_0000004 Ga0453684_0000004_84868_86004 350
77 3300048908 Ga0496105_0342566 Ga0496105_0342566_42_1103 350
78 3300048917 Ga0496114_0019167 Ga0496114_0019167_2046_3122 350
79 3300048929 Ga0496126_0009875 Ga0496126_0009875_4643_5719 350
80 3300049823 Ga0501044_0315036 Ga0501044_0315036_188_1336 350
81 3300050496 nmdc:mga07m45_17500_c1 nmdc:mga07m45_17500_c1_1324_2385 350
82 3300005347 Ga0070668_100313269 Ga0070668_1003132691 351
83 3300025972 Ga0207668_10241841 Ga0207668_102418411 351
84 3300026088 Ga0207641_10103871 Ga0207641_101038713 351
85 3300027876 Ga0209974_10005114 Ga0209974_100051142 351
86 3300037418 Ga0395900_0073148 Ga0395900_0073148_1502_2737 351
87 3300048929 Ga0496126_0049767 Ga0496126_0049767_1390_2448 351
88 3300049570 Ga0501033_0119652 Ga0501033_0119652_614_1792 351
89 3300048925 Ga0496122_0011726 Ga0496122_0011726_1252_2415 352
90 3300049576 Ga0501040_0043031 Ga0501040_0043031_592_1749 352
91 3300005544 Ga0070686_100032048 Ga0070686_1000320482 353
92 3300031251 Ga0265327_10007956 Ga0265327_100079562 353
93 3300045051 Ga0451576_0254158 Ga0451576_0254158_111_1274 353
94 3300047444 Ga0495675_0042336 Ga0495675_0042336_1326_2513 353
95 3300048910 Ga0496107_0122504 Ga0496107_0122504_20_1204 353
96 3300048915 Ga0496112_0021545 Ga0496112_0021545_3230_4420 353
97 3300049571 Ga0501034_0008273 Ga0501034_0008273_799_1992 353
98 3300049571 Ga0501034_0245989 Ga0501034_0245989_71_1264 353
99 3300049581 Ga0501047_0061385 Ga0501047_0061385_210_1403 353
100 3300001976 JGI24752J21851_1000196 JGI24752J21851_10001964 354
101 3300005289 Ga0065704_10079607 Ga0065704_100796073 354
102 3300005331 Ga0070670_100001870 Ga0070670_10000187017 354
103 3300005367 Ga0070667_100002790 Ga0070667_1000027904 354
104 3300005618 Ga0068864_100000080 Ga0068864_10000008018 354
105 3300005841 Ga0068863_100000087 Ga0068863_10000008718 354
106 3300005844 Ga0068862_100000101 Ga0068862_10000010118 354
107 3300009011 Ga0105251_10000680 Ga0105251_1000068011 354
108 3300009101 Ga0105247_10039112 Ga0105247_100391122 354
109 3300009177 Ga0105248_10000029 Ga0105248_1000002967 354
110 3300009553 Ga0105249_10000024 Ga0105249_1000002458 354
111 3300013306 Ga0163162_10014561 Ga0163162_1001456110 354
112 3300014325 Ga0163163_10095204 Ga0163163_100952042 354
113 3300014968 Ga0157379_10004515 Ga0157379_100045153 354
114 3300025735 Ga0207713_1005018 Ga0207713_10050183 354
115 3300025925 Ga0207650_10001439 Ga0207650_100014395 354
116 3300025941 Ga0207711_10000004 Ga0207711_10000004440 354
117 3300025961 Ga0207712_10000034 Ga0207712_1000003459 354
118 3300025986 Ga0207658_10000327 Ga0207658_1000032717 354
119 3300026088 Ga0207641_10000010 Ga0207641_1000001083 354
120 3300026095 Ga0207676_10000036 Ga0207676_10000036126 354
121 3300028380 Ga0268265_10000059 Ga0268265_1000005979 354
122 3300048906 Ga0496103_0010215 Ga0496103_0010215_3404_4468 354
123 3300048917 Ga0496114_0367997 Ga0496114_0367997_120_1184 354
124 3300048920 Ga0496117_0023280 Ga0496117_0023280_1320_2384 354
125 3300048921 Ga0496118_0000797 Ga0496118_0000797_27320_28384 354

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02222

ATP-grasp

ATP-grasp domain

127

299

0.99

PF22660

RS_preATP-grasp-like

Ribonucleotide synthetase preATP-grasp domain

21

118

0.98

PF17769

PurK_C

Phosphoribosylaminoimidazole carboxylase C-terminal domain

326

385

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3aw8-assembly1.cif.gz_B crystal structure of n5-carboxyaminoimidazole ribonucleotide synthetase from thermus thermophilus hb8 0.9654 9 354
3qff-assembly1.cif.gz_B crystal structure of adp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase 0.9584 2 354
3orq-assembly1.cif.gz_A crystal structure of n5-carboxyaminoimidazole synthetase from staphylococcus aureus complexed with adp 0.9573 4 354
3qff-assembly1.cif.gz_B crystal structure of adp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase 0.9531 2 354
4ma0-assembly1.cif.gz_A the crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. tularensis schu s4 in complex with partially hydrolysed atp 0.947 8 353
ID Description Score Start End Superfamily
af_Q54QE4_620_731_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9845 1 107 3.40.50.20
3v4sB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9701 1 112 3.40.50.20
4izoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9689 1 112 3.40.50.20
3aw8B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9667 9 103 3.40.50.20
3aw8B03 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.961 183 354 3.30.470.20
ID Description Score Start End GO Terms
AF-A0A429V6B4-F1-model_v4 N5-carboxyaminoimidazole ribonucleotide synthase (N5-CAIR synthase) (EC 6.3.4.18) (5-(carboxyamino)imidazole ribonucleotide synthetase) 0.989 1 354 GO:0004638
GO:0005524
GO:0005829
GO:0006189
GO:0034028
GO:0046872
AF-A0A429V6B4-F1-model_v4 N5-carboxyaminoimidazole ribonucleotide synthase (N5-CAIR synthase) (EC 6.3.4.18) (5-(carboxyamino)imidazole ribonucleotide synthetase) 0.9862 1 354 GO:0004638
GO:0005524
GO:0005829
GO:0006189
GO:0034028
GO:0046872
AF-A0A3C1B8Z0-F1-model_v4 5-(Carboxyamino)imidazole ribonucleotide synthase 0.9852 1 301 GO:0004638
GO:0005524
GO:0005829
GO:0006189
GO:0046872
AF-A0A7H0G6R3-F1-model_v4 deleted 0.9838 1 353
AF-A0A202DWQ3-F1-model_v4 ATP-grasp domain-containing protein 0.9821 8 283 GO:0003824
GO:0005524
GO:0005829
GO:0006164
GO:0046872

Feature Viewer

pLDDT pTM Quality
95.25 0.93 High
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Predicted Structure (AlphaFold2)

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