F121850

General Info

Members Datasets Scaffolds Average Seq Length
124 104 121 283

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100511314|Ga0068864_1005113141
Length 312
Sequence MAAAPESPDPCASARVRSRECGPPGIVATMIAFFGMGLLGSNFVRALRRRGEDVHVWNRSPDKATALEAEGARAFADPAEAARGAVRVHLTLRDDAAVDDVLERARPGLAANAVIVDHSTTSTQGVLARIARWRERGTTFVHAPVFMGPQNARESTGIMMISGPRGVVDPLRPVLAPMTGKLVDLGERPDAAAAFKLLGNLFLMCMTTGLAEMLALAKALKVPPEQAASLFEQFNPGTTVAPRIKRMVEASFADPSWELTMARKDARLMLDAAAEAGVPLAVLPAIAARMDAVIAEGHGAEDWTVIAKDAVR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
3 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
10 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
43 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
58 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
59 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
64 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
65 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
69 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
70 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
71 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
72 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
73 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
74 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
81 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
82 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
85 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
86 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
87 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
88 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
89 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
90 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
91 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
92 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
93 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
94 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
95 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
96 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
97 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
98 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
99 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
100 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
101 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
102 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
103 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
104 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.58
Metatranscriptomes 0
Isolates 2.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.19
Nodule 0
Rhizoplane 0
Rhizosphere 65.32
Stem 0
Stem Tuber 0
Unclassified 10.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2981625 2162886007 Bacteria 2214
2 JGI24739J22299_10001590 3300001989 Bacteria 8595
3 rootH2_10124826 3300003320 Bacteria 3213
4 Ga0055526_1010137 3300003771 Bacteria 4422
5 Ga0055528_1001292 3300003790 Bacteria 15732
6 Ga0065165_1000022 3300005262 Bacteria 253404
7 Ga0065704_10003647 3300005289 Bacteria 7525
8 Ga0070690_100025717 3300005330 Bacteria 3625
9 Ga0068869_100018149 3300005334 Bacteria 4783
10 Ga0068869_100107338 3300005334 Bacteria 2120
11 Ga0070689_100096752 3300005340 Bacteria 2334
12 Ga0070713_100221383 3300005436 Bacteria 1717
13 Ga0070701_10011571 3300005438 Bacteria 3951
14 Ga0070700_100189611 3300005441 Unclassified 1437
15 Ga0070678_100051741 3300005456 Bacteria 2979
16 Ga0070706_100000172 3300005467 Bacteria 82158
17 Ga0070707_100006160 3300005468 Bacteria 11173
18 Ga0070699_100464200 3300005518 Bacteria 1148
19 Ga0070679_100007433 3300005530 Bacteria 10239
20 Ga0070697_100007398 3300005536 Bacteria 8550
21 Ga0070696_100480296 3300005546 Bacteria 985
22 Ga0068856_100106806 3300005614 Bacteria 2794
23 Ga0068856_100278595 3300005614 Bacteria 1689
24 Ga0068864_100511314 3300005618 Bacteria 1157
25 Ga0068866_10079516 3300005718 Bacteria 1757
26 Ga0068863_100036053 3300005841 Bacteria 4710
27 Ga0068863_100065812 3300005841 Bacteria 3429
28 Ga0068860_100137287 3300005843 Bacteria 2349
29 Ga0068860_100326021 3300005843 Bacteria 1508
30 Ga0068862_100452964 3300005844 Bacteria 1210
31 Ga0097621_100004810 3300006237 Bacteria 9456
32 Ga0068871_100121784 3300006358 Bacteria 2204
33 Ga0068871_100217226 3300006358 Bacteria 1655
34 Ga0075428_100703667 3300006844 Bacteria 1076
35 Ga0075429_100027220 3300006880 Bacteria 4962
36 Ga0075429_100056647 3300006880 Bacteria 3412
37 Ga0068865_100078546 3300006881 Bacteria 2361
38 Ga0111539_10297239 3300009094 Bacteria 1879
39 Ga0105245_10195145 3300009098 Bacteria 1941
40 Ga0105242_10062034 3300009176 Bacteria 3076
41 Ga0105249_10118630 3300009553 Bacteria 2511
42 Ga0157376_10004774 3300014969 Bacteria 9429
43 Ga0157376_10090088 3300014969 Bacteria 2654
44 Ga0209673_1000517 3300025273 Bacteria 63164
45 Ga0209564_1001818 3300025295 Bacteria 19603
46 Ga0209050_1002523 3300025298 Bacteria 15388
47 Ga0207426_1002650 3300025302 Bacteria 11020
48 Ga0209051_1036273 3300025303 Unclassified 1823
49 Ga0209257_1007424 3300025304 Bacteria 6623
50 Ga0207684_10000011 3300025910 Bacteria 502991
51 Ga0207646_10060308 3300025922 Unclassified 3388
52 Ga0207686_10061393 3300025934 Bacteria 2383
53 Ga0207709_10086502 3300025935 Bacteria 2035
54 Ga0207670_10034430 3300025936 Bacteria 3273
55 Ga0207712_10079090 3300025961 Bacteria 2388
56 Ga0207708_10425230 3300026075 Bacteria 1102
57 Ga0207702_10200664 3300026078 Unclassified 1848
58 Ga0207702_10222845 3300026078 Bacteria 1758
59 Ga0207641_10031176 3300026088 Bacteria 4421
60 Ga0207641_10210599 3300026088 Bacteria 1797
61 Ga0207683_10102588 3300026121 Bacteria 2554
62 Ga0268265_10479296 3300028380 Bacteria 1168
63 Ga0268264_10555762 3300028381 Bacteria 1126
64 Ga0265337_1001709 3300028556 Bacteria 10638
65 Ga0265334_10060913 3300028573 Bacteria 1423
66 Ga0307517_10039488 3300028786 Bacteria 5181
67 Ga0307515_10033194 3300028794 Bacteria 8510
68 Ga0307511_10034484 3300030521 Bacteria 4439
69 Ga0265332_10013087 3300031238 Bacteria 3677
70 Ga0265332_10030848 3300031238 Bacteria 2340
71 Ga0265320_10000141 3300031240 Bacteria 61166
72 Ga0307509_10000012 3300031507 Bacteria 285083
73 Ga0307509_10065774 3300031507 Bacteria 3805
74 Ga0307509_10306110 3300031507 Bacteria 1334
75 Ga0307509_10322048 3300031507 Unclassified 1282
76 Ga0307508_10142898 3300031616 Unclassified 1997
77 Ga0307508_10176589 3300031616 Bacteria 1739
78 Ga0265314_10024121 3300031711 Bacteria 4619
79 Ga0307516_10039963 3300031730 Bacteria 4672
80 Ga0373949_0002484 3300035090 Bacteria 4717
81 Ga0373936_0000032 3300035113 Bacteria 112525
82 Ga0373955_0182372 3300035172 Bacteria 1246
83 Ga0373961_0000422 3300035241 Bacteria 17504
84 Ga0373931_0031968 3300035691 Bacteria 2720
85 Ga0453683_0099184 3300044673 Bacteria 1829
86 Ga0466960_0121737 3300044901 Bacteria 1367
87 Ga0451576_0050554 3300045051 Bacteria 4359
88 Ga0451576_0424108 3300045051 Unclassified 1396
89 Ga0495596_0013929 3300046500 Unclassified 3397
90 Ga0495606_0010217 3300046507 Bacteria 7823
91 Ga0495616_0008995 3300046513 Bacteria 5865
92 Ga0495625_0015065 3300046660 Bacteria 6139
93 Ga0495649_0043841 3300046694 Bacteria 2442
94 Ga0495649_0113729 3300046694 Unclassified 1434
95 Ga0495604_0134918 3300047317 Unclassified 1770
96 Ga0495687_019158 3300047443 Bacteria 3365
97 Ga0501047_0024717 3300049581 Bacteria 5768
98 Ga0501083_0066913 3300049744 Bacteria 2392
99 nmdc:mga09592_23943_c1 3300050508 Bacteria 5047
100 nmdc:mga0rr50_502028_c1 3300050513 Unclassified 1031
101 Ga0500635_0001409 3300053080 Bacteria 5784
102 Ga0500646_0019584 3300053090 Bacteria 1791
103 Ga0500583_0209966 3300053092 Bacteria 967
104 Ga0500566_0001204 3300053094 Bacteria 15137
105 Ga0500566_0003329 3300053094 Bacteria 9610
106 Ga0500566_0048355 3300053094 Bacteria 2439
107 Ga0500640_028504 3300053095 Bacteria 2438
108 Ga0500554_002844 3300053102 Bacteria 3458
109 Ga0500554_011906 3300053102 Bacteria 2171
110 Ga0500572_007747 3300053111 Bacteria 2493
111 Ga0500595_001006 3300053119 Bacteria 15793
112 Ga0500597_035213 3300053120 Bacteria 2082
113 Ga0500614_000088 3300053123 Bacteria 21027
114 Ga0500614_001065 3300053123 Bacteria 6819
115 Ga0500642_0041365 3300053130 Bacteria 1993
116 Ga0500559_0010289 3300053136 Bacteria 4021
117 Ga0500568_0056215 3300053139 Bacteria 1534
118 Ga0500622_0029886 3300053156 Bacteria 2863
119 Ga0500638_174562 3300053162 Bacteria 933
120 Ga0500639_122848 3300053163 Bacteria 1244
121 Ga0500637_0029557 3300053178 Bacteria 3041

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005530 Ga0070679_100007433 Ga0070679_1000074332 254
2 3300005614 Ga0068856_100106806 Ga0068856_1001068063 254
3 3300026078 Ga0207702_10200664 Ga0207702_102006641 254
4 3300046507 Ga0495606_0010217 Ga0495606_0010217_6987_7790 266
5 3300053139 Ga0500568_0056215 Ga0500568_0056215_14_814 266
6 3300053092 Ga0500583_0209966 Ga0500583_0209966_144_950 268
7 3300005441 Ga0070700_100189611 Ga0070700_1001896111 270
8 3300026075 Ga0207708_10425230 Ga0207708_104252302 270
9 3300006880 Ga0075429_100027220 Ga0075429_1000272202 275
10 iso_pu_bacteria 2896109856 2896114545 276
11 3300006237 Ga0097621_100004810 Ga0097621_10000481010 279
12 3300006880 Ga0075429_100056647 Ga0075429_1000566472 279
13 3300009176 Ga0105242_10062034 Ga0105242_100620342 279
14 3300014969 Ga0157376_10090088 Ga0157376_100900882 279
15 3300025934 Ga0207686_10061393 Ga0207686_100613932 279
16 3300050508 nmdc:mga09592_23943_c1 nmdc:mga09592_23943_c1_1674_2525 279
17 iso_pu_bacteria 2929921140 2929921171 279
18 iso_pu_bacteria 8003151029 8003152475 279
19 3300005436 Ga0070713_100221383 Ga0070713_1002213832 280
20 3300005546 Ga0070696_100480296 Ga0070696_1004802961 280
21 3300028573 Ga0265334_10060913 Ga0265334_100609132 280
22 3300001989 JGI24739J22299_10001590 JGI24739J22299_100015905 281
23 3300003320 rootH2_10124826 rootH2_101248262 281
24 3300003771 Ga0055526_1010137 Ga0055526_10101374 281
25 3300003790 Ga0055528_1001292 Ga0055528_10012922 281
26 3300005262 Ga0065165_1000022 Ga0065165_1000022185 281
27 3300006844 Ga0075428_100703667 Ga0075428_1007036672 281
28 3300025273 Ga0209673_1000517 Ga0209673_100051718 281
29 3300025295 Ga0209564_1001818 Ga0209564_10018187 281
30 3300025298 Ga0209050_1002523 Ga0209050_10025237 281
31 3300025302 Ga0207426_1002650 Ga0207426_10026508 281
32 3300025303 Ga0209051_1036273 Ga0209051_10362732 281
33 3300025304 Ga0209257_1007424 Ga0209257_10074246 281
34 3300005614 Ga0068856_100278595 Ga0068856_1002785952 282
35 3300026078 Ga0207702_10222845 Ga0207702_102228452 282
36 3300030521 Ga0307511_10034484 Ga0307511_100344842 282
37 3300031616 Ga0307508_10142898 Ga0307508_101428982 282
38 3300045051 Ga0451576_0424108 Ga0451576_0424108_275_1123 282
39 3300005334 Ga0068869_100018149 Ga0068869_1000181496 283
40 3300005334 Ga0068869_100107338 Ga0068869_1001073382 283
41 3300005340 Ga0070689_100096752 Ga0070689_1000967524 283
42 3300005438 Ga0070701_10011571 Ga0070701_100115714 283
43 3300005456 Ga0070678_100051741 Ga0070678_1000517412 283
44 3300005467 Ga0070706_100000172 Ga0070706_10000017264 283
45 3300005468 Ga0070707_100006160 Ga0070707_1000061602 283
46 3300005518 Ga0070699_100464200 Ga0070699_1004642001 283
47 3300005536 Ga0070697_100007398 Ga0070697_1000073986 283
48 3300005718 Ga0068866_10079516 Ga0068866_100795162 283
49 3300005841 Ga0068863_100036053 Ga0068863_1000360532 283
50 3300005841 Ga0068863_100065812 Ga0068863_1000658122 283
51 3300005843 Ga0068860_100137287 Ga0068860_1001372872 283
52 3300005844 Ga0068862_100452964 Ga0068862_1004529641 283
53 3300006358 Ga0068871_100121784 Ga0068871_1001217842 283
54 3300006358 Ga0068871_100217226 Ga0068871_1002172262 283
55 3300006881 Ga0068865_100078546 Ga0068865_1000785462 283
56 3300009094 Ga0111539_10297239 Ga0111539_102972391 283
57 3300009098 Ga0105245_10195145 Ga0105245_101951452 283
58 3300009553 Ga0105249_10118630 Ga0105249_101186302 283
59 3300014969 Ga0157376_10004774 Ga0157376_100047741 283
60 3300025910 Ga0207684_10000011 Ga0207684_1000001165 283
61 3300025922 Ga0207646_10060308 Ga0207646_100603081 283
62 3300025935 Ga0207709_10086502 Ga0207709_100865022 283
63 3300025936 Ga0207670_10034430 Ga0207670_100344305 283
64 3300026088 Ga0207641_10031176 Ga0207641_100311762 283
65 3300026088 Ga0207641_10210599 Ga0207641_102105992 283
66 3300026121 Ga0207683_10102588 Ga0207683_101025883 283
67 3300028380 Ga0268265_10479296 Ga0268265_104792962 283
68 3300028381 Ga0268264_10555762 Ga0268264_105557622 283
69 3300028556 Ga0265337_1001709 Ga0265337_10017094 283
70 3300028786 Ga0307517_10039488 Ga0307517_100394883 283
71 3300028794 Ga0307515_10033194 Ga0307515_100331943 283
72 3300031238 Ga0265332_10013087 Ga0265332_100130874 283
73 3300031238 Ga0265332_10030848 Ga0265332_100308482 283
74 3300031240 Ga0265320_10000141 Ga0265320_1000014147 283
75 3300031507 Ga0307509_10000012 Ga0307509_10000012145 283
76 3300031507 Ga0307509_10065774 Ga0307509_100657744 283
77 3300031507 Ga0307509_10306110 Ga0307509_103061102 283
78 3300031616 Ga0307508_10176589 Ga0307508_101765891 283
79 3300031711 Ga0265314_10024121 Ga0265314_100241214 283
80 3300031730 Ga0307516_10039963 Ga0307516_100399632 283
81 3300035090 Ga0373949_0002484 Ga0373949_0002484_899_1750 283
82 3300035113 Ga0373936_0000032 Ga0373936_0000032_10509_11360 283
83 3300035241 Ga0373961_0000422 Ga0373961_0000422_7954_8805 283
84 3300035691 Ga0373931_0031968 Ga0373931_0031968_1067_1930 283
85 3300044673 Ga0453683_0099184 Ga0453683_0099184_18_869 283
86 3300044901 Ga0466960_0121737 Ga0466960_0121737_81_935 283
87 3300045051 Ga0451576_0050554 Ga0451576_0050554_1489_2340 283
88 3300046500 Ga0495596_0013929 Ga0495596_0013929_2406_3257 283
89 3300046513 Ga0495616_0008995 Ga0495616_0008995_1222_2073 283
90 3300046660 Ga0495625_0015065 Ga0495625_0015065_1127_1978 283
91 3300046694 Ga0495649_0043841 Ga0495649_0043841_1026_1880 283
92 3300046694 Ga0495649_0113729 Ga0495649_0113729_102_953 283
93 3300047317 Ga0495604_0134918 Ga0495604_0134918_879_1730 283
94 3300049581 Ga0501047_0024717 Ga0501047_0024717_342_1196 283
95 3300049744 Ga0501083_0066913 Ga0501083_0066913_840_1694 283
96 3300050513 nmdc:mga0rr50_502028_c1 nmdc:mga0rr50_502028_c1_170_1021 283
97 3300053080 Ga0500635_0001409 Ga0500635_0001409_577_1428 283
98 3300053090 Ga0500646_0019584 Ga0500646_0019584_229_1095 283
99 3300053094 Ga0500566_0001204 Ga0500566_0001204_4440_5291 283
100 3300053094 Ga0500566_0003329 Ga0500566_0003329_7109_7960 283
101 3300053094 Ga0500566_0048355 Ga0500566_0048355_1315_2172 283
102 3300053095 Ga0500640_028504 Ga0500640_028504_418_1269 283
103 3300053102 Ga0500554_002844 Ga0500554_002844_1921_2772 283
104 3300053102 Ga0500554_011906 Ga0500554_011906_192_1043 283
105 3300053111 Ga0500572_007747 Ga0500572_007747_318_1169 283
106 3300053119 Ga0500595_001006 Ga0500595_001006_14314_15165 283
107 3300053120 Ga0500597_035213 Ga0500597_035213_398_1249 283
108 3300053123 Ga0500614_000088 Ga0500614_000088_18665_19516 283
109 3300053123 Ga0500614_001065 Ga0500614_001065_4976_5827 283
110 3300053130 Ga0500642_0041365 Ga0500642_0041365_905_1756 283
111 3300053136 Ga0500559_0010289 Ga0500559_0010289_859_1710 283
112 3300053156 Ga0500622_0029886 Ga0500622_0029886_1899_2750 283
113 3300053162 Ga0500638_174562 Ga0500638_174562_59_910 283
114 3300053163 Ga0500639_122848 Ga0500639_122848_46_897 283
115 3300053178 Ga0500637_0029557 Ga0500637_0029557_1371_2222 283
116 2162886007 SwRhRL2b_contig_2981625 SwRhRL2b_0620.00005460 284
117 3300005289 Ga0065704_10003647 Ga0065704_100036475 284
118 3300005330 Ga0070690_100025717 Ga0070690_1000257172 284
119 3300005618 Ga0068864_100511314 Ga0068864_1005113141 284
120 3300005843 Ga0068860_100326021 Ga0068860_1003260211 284
121 3300025961 Ga0207712_10079090 Ga0207712_100790902 284
122 3300031507 Ga0307509_10322048 Ga0307509_103220482 284
123 3300035172 Ga0373955_0182372 Ga0373955_0182372_281_1156 284
124 3300047443 Ga0495687_019158 Ga0495687_019158_278_1183 284

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

30

186

0.98

PF14833

NAD_binding_11

NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

191

309

0.92

PF03807

F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

30

121

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

35

129

0.87

PF21761

RedAm-like_C

NADPH-dependent reductive aminase-like, C-terminal domain

189

312

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vg0-assembly1.cif.gz_A the crystal structures of the rep-1 protein in complex with monoprenylated rab7 protein 0.9271 3 30
6smy-assembly1.cif.gz_C crystal structure of sla reductase yihu from e. coli with nadh and product dhps 0.9256 3 282
1vg9-assembly3.cif.gz_E the crystal structures of the rep-1 protein in complex with c-terminally truncated rab7 protein 0.925 3 30
7wnw-assembly1.cif.gz_B crystal structure of imine reductase mutant(m5) from actinoalloteichus hymeniacidonis in complex with nadph 0.924 3 282
5ez7-assembly1.cif.gz_A crystal structure of the fad dependent oxidoreductase pa4991 from pseudomonas aeruginosa 0.9237 3 30
ID Description Score Start End Superfamily
af_F4IAP5_318_484_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9554 2 157 3.40.50.720
af_P0A9V8_1_162_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9526 3 156 3.40.50.720
5y8iB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9511 2 159 3.40.50.720
af_Q9V8M5_15_188_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9438 2 158 3.40.50.720
3ckyD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9377 57 159 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A519S322-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9973 3 150 GO:0050661
AF-A0A1V9EHX2-F1-model_v4 6-phosphogluconate dehydrogenase 0.9948 3 278 GO:0016054
GO:0016491
GO:0050661
GO:0051287
AF-A0A520A772-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9861 35 280 GO:0016054
GO:0016491
GO:0050661
AF-A0A519W3M9-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9848 77 282 GO:0016054
GO:0050661
AF-A0A519S0Z2-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9842 112 282

Feature Viewer

pLDDT pTM Quality
95.61 0.89 High
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Predicted Structure (AlphaFold2)

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