F121703

General Info

Members Datasets Scaffolds Average Seq Length
124 91 123 379

Family's Representative Sequence

Representative Sequence 3300005539|Ga0068853_100135690|Ga0068853_1001356902
Length 433
Sequence LYFISVLPCLCGKRQNILQCTNKLLHSKKASVLQQLSDHPKRIITRTIWVLSLVSMFTDISSEMLYPVMPLFLKQIGFTVIFIGILEGIAEAVAGLSKPYFGKLSDTKGRRLPFVQLGYALSAISKPLMAFFIFPLWIFFARTLDRLGKGIRTGARDALLSDEATKETKATVFGFHRSMDTLGAVFGPAIALLYLYFYPKDYRNLFLIAFVPGVLAIVCTLLIKEKTKPLNPIFSFVTYWKNSSPQYKKLVTGLLLFALFNSSDVFLLLKMKESGLNDIAVIGVYIFYNFIYALLAYPAGILADKLGLKKVFLFGLFIFALVYAGFAFNNNLVVFIILFALYGLYAAATEGISKAWISNIVDRSDTATAIGTYTGFQSIATLLASSICGLLWYNFGGLATFLITAAITLIVIIYLSLSKDHDGSKPSDPKKIL

Samples

Sample ID Description Type Environment
1 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
77 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
78 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
79 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
83 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
86 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
87 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
88 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
89 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
90 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
91 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.19
Metatranscriptomes 0
Isolates 0.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.23
Nodule 0
Rhizoplane 0.81
Rhizosphere 90.32
Stem 0
Stem Tuber 0
Unclassified 5.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1006634 3300001904 Unclassified 1948
2 JGI24751J29686_10000526 3300002459 Bacteria 10935
3 rootH2_10085969 3300003320 Bacteria 6700
4 rootL2_10120150 3300003322 Bacteria 1831
5 rootH1_10230821 3300003323 Bacteria 2003
6 Ga0070683_100087789 3300005329 Bacteria 2917
7 Ga0070690_100007489 3300005330 Bacteria 6254
8 Ga0070670_100008348 3300005331 Bacteria 8829
9 Ga0070677_10067774 3300005333 Unclassified 1492
10 Ga0068869_100025119 3300005334 Bacteria 4134
11 Ga0070682_100000124 3300005337 Bacteria 67529
12 Ga0070682_100036331 3300005337 Bacteria 3011
13 Ga0068868_100023157 3300005338 Bacteria 4697
14 Ga0068868_100140815 3300005338 Bacteria 1980
15 Ga0070668_100107829 3300005347 Bacteria 2214
16 Ga0070675_100018870 3300005354 Bacteria 5492
17 Ga0070674_100007531 3300005356 Bacteria 6424
18 Ga0070673_100005811 3300005364 Bacteria 7947
19 Ga0070673_100020758 3300005364 Bacteria 4743
20 Ga0070673_100249132 3300005364 Bacteria 1548
21 Ga0070659_100096815 3300005366 Bacteria 2371
22 Ga0070667_100037756 3300005367 Unclassified 4050
23 Ga0070681_10051846 3300005458 Bacteria 4092
24 Ga0068853_100049941 3300005539 Unclassified 3597
25 Ga0068853_100052038 3300005539 Bacteria 3527
26 Ga0068853_100135690 3300005539 Bacteria 2206
27 Ga0070672_100135023 3300005543 Unclassified 2031
28 Ga0070686_100172557 3300005544 Bacteria 1530
29 Ga0070665_100016324 3300005548 Bacteria 7446
30 Ga0068855_100118086 3300005563 Bacteria 3038
31 Ga0068857_100167489 3300005577 Bacteria 1996
32 Ga0068854_100021724 3300005578 Bacteria 4359
33 Ga0068854_100177763 3300005578 Bacteria 1660
34 Ga0068856_100034775 3300005614 Bacteria 4937
35 Ga0068859_100011405 3300005617 Bacteria 8934
36 Ga0068861_100075855 3300005719 Unclassified 2618
37 Ga0068861_100173696 3300005719 Unclassified 1788
38 Ga0068851_10000252 3300005834 Bacteria 25317
39 Ga0068863_100053835 3300005841 Bacteria 3815
40 Ga0068860_100013129 3300005843 Bacteria 8128
41 Ga0097621_100133196 3300006237 Bacteria 2117
42 Ga0068871_100055943 3300006358 Bacteria 3205
43 Ga0068871_100200325 3300006358 Bacteria 1723
44 Ga0068865_100167208 3300006881 Bacteria 1683
45 Ga0097620_100011405 3300006931 Bacteria 8934
46 Ga0105240_10000023 3300009093 Bacteria 385028
47 Ga0105240_10000107 3300009093 Bacteria 171629
48 Ga0105240_10236051 3300009093 Bacteria 2122
49 Ga0105240_10248612 3300009093 Bacteria 2058
50 Ga0114129_10007429 3300009147 Bacteria 15604
51 Ga0105241_10096125 3300009174 Unclassified 2346
52 Ga0105242_10006238 3300009176 Bacteria 9184
53 Ga0105242_10020547 3300009176 Bacteria 5179
54 Ga0105242_10228524 3300009176 Bacteria 1666
55 Ga0105239_10020534 3300010375 Bacteria 7286
56 Ga0157369_10098816 3300013105 Bacteria 3112
57 Ga0157369_10109182 3300013105 Bacteria 2942
58 Ga0157374_10072287 3300013296 Bacteria 3254
59 Ga0157378_10077888 3300013297 Unclassified 2989
60 Ga0163162_10383913 3300013306 Bacteria 1538
61 Ga0157372_10010462 3300013307 Bacteria 9872
62 Ga0157372_10068196 3300013307 Bacteria 3999
63 Ga0157372_10358009 3300013307 Unclassified 1700
64 Ga0157372_10444509 3300013307 Bacteria 1511
65 Ga0157380_10004153 3300014326 Bacteria 10009
66 Ga0157376_10147286 3300014969 Unclassified 2119
67 Ga0207688_10007125 3300025901 Bacteria 6079
68 Ga0207647_10006143 3300025904 Bacteria 8748
69 Ga0207645_10000357 3300025907 Bacteria 37837
70 Ga0207645_10072915 3300025907 Bacteria 2198
71 Ga0207643_10051983 3300025908 Bacteria 2326
72 Ga0207707_10176912 3300025912 Bacteria 1864
73 Ga0207695_10000016 3300025913 Bacteria 771991
74 Ga0207695_10000199 3300025913 Bacteria 166179
75 Ga0207657_10001900 3300025919 Bacteria 22572
76 Ga0207649_10029898 3300025920 Bacteria 3221
77 Ga0207681_10173751 3300025923 Bacteria 1635
78 Ga0207650_10163683 3300025925 Unclassified 1764
79 Ga0207704_10055330 3300025938 Unclassified 2424
80 Ga0207691_10067176 3300025940 Bacteria 3242
81 Ga0207689_10018439 3300025942 Bacteria 5890
82 Ga0207661_10068778 3300025944 Bacteria 2885
83 Ga0207661_10251488 3300025944 Bacteria 1571
84 Ga0207667_10010151 3300025949 Bacteria 11030
85 Ga0207651_10055785 3300025960 Unclassified 2716
86 Ga0207712_10007205 3300025961 Bacteria 7015
87 Ga0207677_10010544 3300026023 Bacteria 5235
88 Ga0207639_10009420 3300026041 Bacteria 6736
89 Ga0207639_10048049 3300026041 Bacteria 3228
90 Ga0207639_10090415 3300026041 Bacteria 2448
91 Ga0207702_10029360 3300026078 Bacteria 4576
92 Ga0207641_10042410 3300026088 Bacteria 3817
93 Ga0207648_10000394 3300026089 Bacteria 48433
94 Ga0207648_10002407 3300026089 Bacteria 20149
95 Ga0207674_10058589 3300026116 Bacteria 3901
96 Ga0207674_10191256 3300026116 Bacteria 1996
97 Ga0207675_100099343 3300026118 Unclassified 2741
98 Ga0207675_100243449 3300026118 Unclassified 1738
99 Ga0207683_10000651 3300026121 Bacteria 31796
100 Ga0307515_10000001 3300028794 Bacteria 4259510
101 Ga0265327_10026239 3300031251 Bacteria 3379
102 Ga0307509_10031410 3300031507 Bacteria 5864
103 Ga0265314_10041066 3300031711 Unclassified 3314
104 Ga0307410_10113041 3300031852 Bacteria 1968
105 Ga0395905_0004836 3300037471 Bacteria 13889
106 Ga0395905_0016840 3300037471 Bacteria 6945
107 Ga0395901_0000135 3300038443 Bacteria 95547
108 Ga0451853_3105341 3300041512 Bacteria 2666
109 Ga0451577_0000180 3300042876 Bacteria 135209
110 Ga0453684_0000288 3300044712 Bacteria 216718
111 Ga0453684_0001448 3300044712 Bacteria 67464
112 Ga0453684_0027005 3300044712 Bacteria 8258
113 Ga0453684_0098854 3300044712 Bacteria 3576
114 Ga0453684_0171085 3300044712 Bacteria 2560
115 Ga0453684_0259898 3300044712 Unclassified 1989
116 Ga0466960_0007635 3300044901 Unclassified 4404
117 Ga0496112_0002946 3300048915 Bacteria 13882
118 Ga0501259_001233 3300049688 Bacteria 4265
119 nmdc:mga05p37_4183_c1 3300050507 Bacteria 16863
120 Ga0500646_0011155 3300053090 Bacteria 2307
121 Ga0500583_0000111 3300053092 Bacteria 40256
122 Ga0500583_0001556 3300053092 Bacteria 6636
123 Ga0500622_0042868 3300053156 Bacteria 2348

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005334 Ga0068869_100025119 Ga0068869_1000251193 325
2 3300005356 Ga0070674_100007531 Ga0070674_1000075314 325
3 3300005364 Ga0070673_100020758 Ga0070673_1000207583 325
4 3300005578 Ga0068854_100021724 Ga0068854_1000217242 325
5 3300005843 Ga0068860_100013129 Ga0068860_1000131297 325
6 3300025901 Ga0207688_10007125 Ga0207688_100071252 325
7 3300025907 Ga0207645_10000357 Ga0207645_1000035720 325
8 3300026089 Ga0207648_10002407 Ga0207648_1000240713 325
9 3300005338 Ga0068868_100023157 Ga0068868_1000231573 326
10 3300005539 Ga0068853_100049941 Ga0068853_1000499412 326
11 3300025908 Ga0207643_10051983 Ga0207643_100519831 326
12 3300025923 Ga0207681_10173751 Ga0207681_101737511 326
13 3300026121 Ga0207683_10000651 Ga0207683_100006519 326
14 3300005719 Ga0068861_100075855 Ga0068861_1000758552 330
15 3300009174 Ga0105241_10096125 Ga0105241_100961252 330
16 3300013297 Ga0157378_10077888 Ga0157378_100778882 330
17 3300026118 Ga0207675_100099343 Ga0207675_1000993432 330
18 3300006358 Ga0068871_100055943 Ga0068871_1000559433 331
19 3300025942 Ga0207689_10018439 Ga0207689_100184393 331
20 3300025960 Ga0207651_10055785 Ga0207651_100557852 331
21 3300026041 Ga0207639_10048049 Ga0207639_100480492 331
22 3300025944 Ga0207661_10068778 Ga0207661_100687781 338
23 3300003323 rootH1_10230821 rootH1_102308212 345
24 3300013307 Ga0157372_10358009 Ga0157372_103580092 346
25 3300026116 Ga0207674_10058589 Ga0207674_100585892 350
26 3300005330 Ga0070690_100007489 Ga0070690_1000074892 351
27 3300028794 Ga0307515_10000001 Ga0307515_10000001650 352
28 3300009176 Ga0105242_10020547 Ga0105242_100205473 353
29 3300005367 Ga0070667_100037756 Ga0070667_1000377562 354
30 3300005544 Ga0070686_100172557 Ga0070686_1001725571 355
31 3300005539 Ga0068853_100052038 Ga0068853_1000520384 358
32 3300026041 Ga0207639_10090415 Ga0207639_100904153 358
33 3300041512 Ga0451853_3105341 Ga0451853_3105341_1091_2227 358
34 3300044712 Ga0453684_0098854 Ga0453684_0098854_27_1106 358
35 3300005337 Ga0070682_100000124 Ga0070682_10000012433 359
36 3300013307 Ga0157372_10068196 Ga0157372_100681962 360
37 3300005329 Ga0070683_100087789 Ga0070683_1000877891 361
38 3300014969 Ga0157376_10147286 Ga0157376_101472862 364
39 3300005617 Ga0068859_100011405 Ga0068859_1000114056 367
40 3300006931 Ga0097620_100011405 Ga0097620_1000114056 367
41 3300031251 Ga0265327_10026239 Ga0265327_100262393 367
42 3300044712 Ga0453684_0171085 Ga0453684_0171085_53_1246 367
43 3300014326 Ga0157380_10004153 Ga0157380_100041534 368
44 3300025925 Ga0207650_10163683 Ga0207650_101636831 369
45 3300044712 Ga0453684_0259898 Ga0453684_0259898_659_1777 370
46 3300003320 rootH2_10085969 rootH2_100859694 371
47 3300006237 Ga0097621_100133196 Ga0097621_1001331962 372
48 3300009093 Ga0105240_10236051 Ga0105240_102360514 372
49 3300010375 Ga0105239_10020534 Ga0105239_100205347 372
50 3300005458 Ga0070681_10051846 Ga0070681_100518464 374
51 3300005548 Ga0070665_100016324 Ga0070665_10001632412 376
52 3300009093 Ga0105240_10248612 Ga0105240_102486124 376
53 3300009176 Ga0105242_10228524 Ga0105242_102285242 376
54 3300025904 Ga0207647_10006143 Ga0207647_100061436 376
55 3300048915 Ga0496112_0002946 Ga0496112_0002946_5101_6243 377
56 3300049688 Ga0501259_001233 Ga0501259_001233_2918_4099 381
57 3300013306 Ga0163162_10383913 Ga0163162_103839131 382
58 3300037471 Ga0395905_0016840 Ga0395905_0016840_2916_4082 383
59 3300009147 Ga0114129_10007429 Ga0114129_100074295 384
60 3300013307 Ga0157372_10010462 Ga0157372_100104629 384
61 3300031507 Ga0307509_10031410 Ga0307509_100314102 384
62 3300050507 nmdc:mga05p37_4183_c1 nmdc:mga05p37_4183_c1_10267_11439 384
63 3300053090 Ga0500646_0011155 Ga0500646_0011155_605_1765 384
64 3300053092 Ga0500583_0000111 Ga0500583_0000111_18971_20131 384
65 3300053092 Ga0500583_0001556 Ga0500583_0001556_442_1602 384
66 3300053156 Ga0500622_0042868 Ga0500622_0042868_763_1923 384
67 3300005333 Ga0070677_10067774 Ga0070677_100677741 385
68 3300005337 Ga0070682_100036331 Ga0070682_1000363313 385
69 3300005338 Ga0068868_100140815 Ga0068868_1001408152 385
70 3300005347 Ga0070668_100107829 Ga0070668_1001078291 385
71 3300005364 Ga0070673_100005811 Ga0070673_1000058112 385
72 3300005364 Ga0070673_100249132 Ga0070673_1002491321 385
73 3300005366 Ga0070659_100096815 Ga0070659_1000968151 385
74 3300005543 Ga0070672_100135023 Ga0070672_1001350232 385
75 3300005578 Ga0068854_100177763 Ga0068854_1001777631 385
76 3300013105 Ga0157369_10098816 Ga0157369_100988163 385
77 3300025912 Ga0207707_10176912 Ga0207707_101769122 385
78 3300025919 Ga0207657_10001900 Ga0207657_1000190022 385
79 3300025920 Ga0207649_10029898 Ga0207649_100298982 385
80 3300025940 Ga0207691_10067176 Ga0207691_100671762 385
81 3300025944 Ga0207661_10251488 Ga0207661_102514882 385
82 3300026023 Ga0207677_10010544 Ga0207677_100105442 385
83 3300005539 Ga0068853_100135690 Ga0068853_1001356902 386
84 3300009093 Ga0105240_10000023 Ga0105240_1000002351 386
85 3300009093 Ga0105240_10000107 Ga0105240_1000010765 386
86 3300025913 Ga0207695_10000016 Ga0207695_10000016267 386
87 3300025913 Ga0207695_10000199 Ga0207695_1000019979 386
88 3300026041 Ga0207639_10009420 Ga0207639_100094202 386
89 iso_pu_bacteria 2884791551 2884795420 386
90 3300002459 JGI24751J29686_10000526 JGI24751J29686_100005269 387
91 3300005331 Ga0070670_100008348 Ga0070670_1000083485 387
92 3300025961 Ga0207712_10007205 Ga0207712_100072054 387
93 3300038443 Ga0395901_0000135 Ga0395901_0000135_7733_8905 387
94 3300044901 Ga0466960_0007635 Ga0466960_0007635_355_1524 387
95 3300005719 Ga0068861_100173696 Ga0068861_1001736961 388
96 3300006881 Ga0068865_100167208 Ga0068865_1001672082 388
97 3300009176 Ga0105242_10006238 Ga0105242_100062382 388
98 3300025907 Ga0207645_10072915 Ga0207645_100729152 388
99 3300025938 Ga0207704_10055330 Ga0207704_100553301 388
100 3300026089 Ga0207648_10000394 Ga0207648_100003943 388
101 3300026118 Ga0207675_100243449 Ga0207675_1002434492 388
102 3300042876 Ga0451577_0000180 Ga0451577_0000180_123727_124899 389
103 3300044712 Ga0453684_0000288 Ga0453684_0000288_129062_130234 389
104 3300044712 Ga0453684_0001448 Ga0453684_0001448_50249_51421 389
105 3300005354 Ga0070675_100018870 Ga0070675_1000188704 390
106 3300005563 Ga0068855_100118086 Ga0068855_1001180862 390
107 3300005577 Ga0068857_100167489 Ga0068857_1001674892 390
108 3300005614 Ga0068856_100034775 Ga0068856_1000347753 390
109 3300013296 Ga0157374_10072287 Ga0157374_100722872 390
110 3300025949 Ga0207667_10010151 Ga0207667_100101515 390
111 3300026078 Ga0207702_10029360 Ga0207702_100293603 390
112 3300026116 Ga0207674_10191256 Ga0207674_101912562 390
113 3300031852 Ga0307410_10113041 Ga0307410_101130412 390
114 3300044712 Ga0453684_0027005 Ga0453684_0027005_2538_3713 390
115 3300001904 JGI24736J21556_1006634 JGI24736J21556_10066342 391
116 3300003322 rootL2_10120150 rootL2_101201501 391
117 3300005834 Ga0068851_10000252 Ga0068851_1000025221 391
118 3300005841 Ga0068863_100053835 Ga0068863_1000538355 391
119 3300006358 Ga0068871_100200325 Ga0068871_1002003251 391
120 3300013105 Ga0157369_10109182 Ga0157369_101091822 391
121 3300013307 Ga0157372_10444509 Ga0157372_104445092 391
122 3300026088 Ga0207641_10042410 Ga0207641_100424104 391
123 3300031711 Ga0265314_10041066 Ga0265314_100410663 391
124 3300037471 Ga0395905_0004836 Ga0395905_0004836_3256_4461 391

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

51

288

0.83

PF07690

MFS_1

Major Facilitator Superfamily

250

432

0.82

PF12832

MFS_1_like

MFS_1 like family

48

403

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
6s4m-assembly1.cif.gz_A crystal structure of the human organic anion transporter mfsd10 (tetran) 0.8704 6 379
7ckr-assembly1.cif.gz_A cryo-em structure of the human mct1/basigin-2 complex in the presence of anti-cancer drug candidate bay-8002 in the outward-open conformation. 0.8571 11 386
6lz0-assembly1.cif.gz_A cryo-em structure of human mct1 in complex with basigin-2 in the presence of lactate 0.8424 10 386
7bc7-assembly1.cif.gz_A cryo-em structure of the proton coupled folate transporter at ph 6.0 bound to pemetrexed 0.8423 11 387
6s4m-assembly1.cif.gz_A crystal structure of the human organic anion transporter mfsd10 (tetran) 0.8328 6 379
ID Description Score Start End Superfamily
af_Q58713_262_398_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9703 247 382 1.20.1250.20
af_Q58713_262_398_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9497 247 382 1.20.1250.20
af_Q4D047_16_187_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9195 13 184 1.20.1250.20
af_Q4D047_237_423_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9191 230 384 1.20.1250.20
af_Q4CXU4_14_275_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9133 12 184 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A4Q5Z0Z7-F1-model_v4 MFS transporter 0.9962 1 381 GO:0016020
GO:0022857
AF-A0A7C4JVP8-F1-model_v4 MFS transporter 0.9863 4 381 GO:0016020
GO:0022857
AF-A0A4S4NIR5-F1-model_v4 MFS transporter 0.9863 4 379 GO:0016020
GO:0022857
AF-A0A4Q3CUE8-F1-model_v4 deleted 0.9861 1 288
AF-A0A3C1WND7-F1-model_v4 MFS transporter 0.984 1 382 GO:0016020
GO:0022857

Feature Viewer

pLDDT pTM Quality
91.71 0.89 High
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Predicted Structure (AlphaFold2)

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