F117587

General Info

Members Datasets Scaffolds Average Seq Length
123 106 246 390

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100351296|Ga0070698_1003512961
Length 403
Sequence MIMNSRRPEAVIVDAVRSPMGKGKPGGALSNLHPVDLLAQVFAALVERNRIDPGSVDDVLVGCVGQVGEQSATPGRQAWLAAGFPAHVPSVTIERKCGSGQQAIDFAVQGVMAGAYDLVIAGGVESMSRVPLGSPRIGKDPHGPRVTARYAPGLVPQGISAELVAAHWNLSRAELDAFSVRSHQRAAAARDAGQFEGEIAPIRVVTDSGDCVVVTADETIRADTSVERLAQLQPAFARPDYTERFPEIDWKITAGNSSQITDGASAVLVMSAERAAAEGLRPRARIVASAVCGDDPLMMLTGPIPASRKVLARAGLRLDDIDLFEVNEAFASVPLAWQAELGVDDQRLNVRGGAVALGHPLGASGSRLLTTLLNALEASRGRYALQTMCEAGGMANAFIVERL

Samples

Sample ID Description Type Environment
1 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
6 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
18 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
19 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
22 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
28 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
48 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
52 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
59 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
65 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
71 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
72 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
73 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
74 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
75 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
76 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
77 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
78 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
79 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
80 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
81 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
82 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
83 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
84 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
85 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
88 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
89 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
90 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
97 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
98 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
99 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
100 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
101 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
102 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
103 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
104 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
105 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
106 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.06
Metatranscriptomes 1.63
Isolates 7.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.88
Nodule 2.44
Rhizoplane 1.63
Rhizosphere 77.24
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070698_100351296 3300005471 Bacteria 1406
2 JGI24739J22299_10005609 3300001989 Bacteria 4759
3 JGI24737J22298_10014361 3300001990 Bacteria 2571
4 Ga0070713_100011474 3300005436 Bacteria 6455
5 Ga0070713_100049279 3300005436 Bacteria 3474
6 Ga0070711_100013486 3300005439 Bacteria 5133
7 Ga0070663_100018305 3300005455 Bacteria 4590
8 Ga0070679_100136370 3300005530 Bacteria 2435
9 Ga0068853_100028596 3300005539 Bacteria 4689
10 Ga0070665_100000078 3300005548 Bacteria 188101
11 Ga0070665_100011331 3300005548 Bacteria 9020
12 Ga0068855_100041233 3300005563 Bacteria 5472
13 Ga0068857_100217483 3300005577 Bacteria 1744
14 Ga0068854_100002662 3300005578 Bacteria 11078
15 Ga0068856_100016013 3300005614 Bacteria 7248
16 Ga0081455_10000026 3300005937 Bacteria 157062
17 Ga0081455_10001383 3300005937 Bacteria 29946
18 Ga0070717_10004554 3300006028 Bacteria 10029
19 Ga0075365_10158320 3300006038 Bacteria 1577
20 Ga0075364_10009080 3300006051 Bacteria 5954
21 Ga0099826_10000021 3300006948 Bacteria 173580
22 Ga0105251_10064171 3300009011 Bacteria 1722
23 Ga0105240_10046929 3300009093 Bacteria 5469
24 Ga0105238_10000655 3300009551 Bacteria 36285
25 Ga0105238_10023333 3300009551 Bacteria 6307
26 Ga0099796_10014056 3300010159 Bacteria 2302
27 Ga0105239_10028515 3300010375 Bacteria 6139
28 Ga0163163_10009816 3300014325 Bacteria 8576
29 Ga0157379_10064365 3300014968 Bacteria 3277
30 Ga0206353_11013814 3300020082 Bacteria 7863
31 Ga0213875_10006271 3300021388 Bacteria 6259
32 Ga0207647_10013061 3300025904 Bacteria 5770
33 Ga0207643_10035384 3300025908 Bacteria 2800
34 Ga0207654_10145256 3300025911 Bacteria 1517
35 Ga0207695_10028027 3300025913 Bacteria 6256
36 Ga0207671_10018712 3300025914 Bacteria 5308
37 Ga0207652_10360719 3300025921 Bacteria 1312
38 Ga0207646_10035665 3300025922 Bacteria 4492
39 Ga0207694_10014150 3300025924 Bacteria 6015
40 Ga0207694_10024128 3300025924 Bacteria 4618
41 Ga0207700_10287662 3300025928 Bacteria 1416
42 Ga0207706_10096544 3300025933 Bacteria 2599
43 Ga0207686_10188694 3300025934 Bacteria 1468
44 Ga0207665_10060634 3300025939 Bacteria 2562
45 Ga0207661_10159011 3300025944 Bacteria 1959
46 Ga0207667_10015732 3300025949 Bacteria 8580
47 Ga0207640_10006823 3300025981 Bacteria 6281
48 Ga0207639_10010134 3300026041 Bacteria 6519
49 Ga0207678_10047993 3300026067 Bacteria 3691
50 Ga0207702_10018692 3300026078 Bacteria 5733
51 Ga0207674_10023699 3300026116 Bacteria 6570
52 Ga0209282_1000019 3300027666 Bacteria 184034
53 Ga0268266_10000740 3300028379 Bacteria 43690
54 Ga0268266_10192379 3300028379 Bacteria 1863
55 Ga0307515_10270579 3300028794 Bacteria 1421
56 Ga0265327_10000466 3300031251 Bacteria 71897
57 Ga0307513_10000607 3300031456 Bacteria 51363
58 Ga0307513_10013096 3300031456 Bacteria 10197
59 Ga0307405_10027915 3300031731 Bacteria 3280
60 Ga0307410_10075214 3300031852 Bacteria 2354
61 Ga0307407_10023442 3300031903 Bacteria 3221
62 Ga0307412_10286686 3300031911 Bacteria 1295
63 Ga0307409_100008245 3300031995 Bacteria 6309
64 Ga0307409_100073330 3300031995 Bacteria 2730
65 Ga0307416_100070613 3300032002 Bacteria 2897
66 Ga0372808_008533 3300036459 Bacteria 1422
67 Ga0373925_0000841 3300037068 Bacteria 28221
68 Ga0395900_0016770 3300037418 Bacteria 7473
69 Ga0395898_0005419 3300037466 Bacteria 13781
70 Ga0395898_0194096 3300037466 Bacteria 1940
71 Ga0436364_0363731 3300037853 Bacteria 1634
72 Ga0436364_0901128 3300037853 Bacteria 42043
73 Ga0436364_1296240 3300037853 Bacteria 2298
74 Ga0395901_0003903 3300038443 Bacteria 15002
75 Ga0395901_0239646 3300038443 Bacteria 1892
76 Ga0466966_0060458 3300044684 Bacteria 2391
77 Ga0466963_0004018 3300044694 Bacteria 8505
78 Ga0466970_0131268 3300044765 Bacteria 1376
79 Ga0466959_0023190 3300045049 Bacteria 4592
80 Ga0466959_0178372 3300045049 Bacteria 1487
81 Ga0466958_0046877 3300045836 Bacteria 2609
82 Ga0466967_0004685 3300045976 Bacteria 9289
83 Ga0466967_0042605 3300045976 Bacteria 3924
84 Ga0466967_0110856 3300045976 Bacteria 2521
85 Ga0466967_0187612 3300045976 Bacteria 1953
86 Ga0495650_0011210 3300046471 Bacteria 4932
87 Ga0495605_0014447 3300046474 Bacteria 4325
88 Ga0495584_0043845 3300046491 Bacteria 2258
89 Ga0495596_0001584 3300046500 Bacteria 12979
90 Ga0495607_0003726 3300046501 Bacteria 11543
91 Ga0495610_0003613 3300046512 Bacteria 11938
92 Ga0495616_0028260 3300046513 Bacteria 2969
93 Ga0495648_0001495 3300046524 Bacteria 22858
94 Ga0495609_0002251 3300046538 Bacteria 12043
95 Ga0495597_0015363 3300046542 Bacteria 3627
96 Ga0495611_0031373 3300046648 Bacteria 2339
97 Ga0495661_0046367 3300046665 Bacteria 2654
98 Ga0495670_0091408 3300046691 Bacteria 1558
99 Ga0495671_0001838 3300046692 Bacteria 13657
100 Ga0495604_0013015 3300047317 Bacteria 6628
101 Ga0495672_0022003 3300047320 Bacteria 4151
102 Ga0496110_0206041 3300048913 Bacteria 1787
103 Ga0496115_0138573 3300048918 Bacteria 2006
104 Ga0496116_0006828 3300048919 Bacteria 10260
105 Ga0496121_0034295 3300048924 Bacteria 4570
106 Ga0496122_0002736 3300048925 Bacteria 24380
107 Ga0496123_0005201 3300048926 Bacteria 13226
108 Ga0496125_0080274 3300048928 Bacteria 2497
109 Ga0501034_0024636 3300049571 Bacteria 6120
110 Ga0501047_0077606 3300049581 Bacteria 3195
111 nmdc:mga00v17_1675_c2 3300050491 Bacteria 5881
112 Ga0500573_0000737 3300053140 Bacteria 14612
113 Ga0500573_0016097 3300053140 Bacteria 4243
114 Ga0500645_003724 3300053730 Bacteria 6077
115 2523384240 2523231044 Bacteria 6434991
116 2812331214 2811994874 Bacteria 5367947
117 2862993381 2862993130 Bacteria 3860849
118 2870622533 2870622029 Bacteria 3643329
119 2870628884 2870628048 Bacteria 3696012
120 2891331007 2891326441 Bacteria 6439512
121 2939659085 2939657138 Bacteria 3740283
122 2990064128 2990059506 Bacteria 9321252
123 8023683569 8023680758 Bacteria 7729763
124 Ga0070698_100351296
125 JGI24739J22299_10005609
126 JGI24737J22298_10014361
127 Ga0070713_100011474
128 Ga0070713_100049279
129 Ga0070711_100013486
130 Ga0070663_100018305
131 Ga0070679_100136370
132 Ga0068853_100028596
133 Ga0070665_100000078
134 Ga0070665_100011331
135 Ga0068855_100041233
136 Ga0068857_100217483
137 Ga0068854_100002662
138 Ga0068856_100016013
139 Ga0081455_10000026
140 Ga0081455_10001383
141 Ga0070717_10004554
142 Ga0075365_10158320
143 Ga0075364_10009080
144 Ga0099826_10000021
145 Ga0105251_10064171
146 Ga0105240_10046929
147 Ga0105238_10000655
148 Ga0105238_10023333
149 Ga0099796_10014056
150 Ga0105239_10028515
151 Ga0163163_10009816
152 Ga0157379_10064365
153 Ga0206353_11013814
154 Ga0213875_10006271
155 Ga0207647_10013061
156 Ga0207643_10035384
157 Ga0207654_10145256
158 Ga0207695_10028027
159 Ga0207671_10018712
160 Ga0207652_10360719
161 Ga0207646_10035665
162 Ga0207694_10014150
163 Ga0207694_10024128
164 Ga0207700_10287662
165 Ga0207706_10096544
166 Ga0207686_10188694
167 Ga0207665_10060634
168 Ga0207661_10159011
169 Ga0207667_10015732
170 Ga0207640_10006823
171 Ga0207639_10010134
172 Ga0207678_10047993
173 Ga0207702_10018692
174 Ga0207674_10023699
175 Ga0209282_1000019
176 Ga0268266_10000740
177 Ga0268266_10192379
178 Ga0307515_10270579
179 Ga0265327_10000466
180 Ga0307513_10000607
181 Ga0307513_10013096
182 Ga0307405_10027915
183 Ga0307410_10075214
184 Ga0307407_10023442
185 Ga0307412_10286686
186 Ga0307409_100008245
187 Ga0307409_100073330
188 Ga0307416_100070613
189 Ga0372808_008533
190 Ga0373925_0000841
191 Ga0395900_0016770
192 Ga0395898_0005419
193 Ga0395898_0194096
194 Ga0436364_0363731
195 Ga0436364_0901128
196 Ga0436364_1296240
197 Ga0395901_0003903
198 Ga0395901_0239646
199 Ga0466966_0060458
200 Ga0466963_0004018
201 Ga0466970_0131268
202 Ga0466959_0023190
203 Ga0466959_0178372
204 Ga0466958_0046877
205 Ga0466967_0004685
206 Ga0466967_0042605
207 Ga0466967_0110856
208 Ga0466967_0187612
209 Ga0495650_0011210
210 Ga0495605_0014447
211 Ga0495584_0043845
212 Ga0495596_0001584
213 Ga0495607_0003726
214 Ga0495610_0003613
215 Ga0495616_0028260
216 Ga0495648_0001495
217 Ga0495609_0002251
218 Ga0495597_0015363
219 Ga0495611_0031373
220 Ga0495661_0046367
221 Ga0495670_0091408
222 Ga0495671_0001838
223 Ga0495604_0013015
224 Ga0495672_0022003
225 Ga0496110_0206041
226 Ga0496115_0138573
227 Ga0496116_0006828
228 Ga0496121_0034295
229 Ga0496122_0002736
230 Ga0496123_0005201
231 Ga0496125_0080274
232 Ga0501034_0024636
233 Ga0501047_0077606
234 nmdc:mga00v17_1675_c2
235 Ga0500573_0000737
236 Ga0500573_0016097
237 Ga0500645_003724
238 2523384240
239 2812331214
240 2862993381
241 2870622533
242 2870628884
243 2891331007
244 2939659085
245 2990064128
246 8023683569

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02803

Thiolase_C

Thiolase, C-terminal domain

280

402

0.98

PF00108

Thiolase_N

Thiolase, N-terminal domain

10

273

0.9

PF00109

ketoacyl-synt

Beta-ketoacyl synthase, N-terminal domain

43

131

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4b3j-assembly1.cif.gz_D crystal structure of mycobacterium tuberculosis fatty acid beta- oxidation complex with coenzymea bound at the hydratase and thiolase active sites 0.9464 1 393
4e1l-assembly1.cif.gz_D crystal structure of acetoacetyl-coa thiolase (thla2) from clostridium difficile 0.9463 1 392
4b3j-assembly1.cif.gz_D crystal structure of mycobacterium tuberculosis fatty acid beta- oxidation complex with coenzymea bound at the hydratase and thiolase active sites 0.9441 1 393
4e1l-assembly1.cif.gz_D crystal structure of acetoacetyl-coa thiolase (thla2) from clostridium difficile 0.9437 1 392
7o4v-assembly1.cif.gz_D structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with oxidized nicotinamide adenine dinucleotide 0.9432 1 393
ID Description Score Start End Superfamily
af_O53871_287_399_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9806 277 388 3.40.47.10
af_A0A096MJY8_281_393_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9777 277 387 3.40.47.10
af_P76461_265_393_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9688 265 393 3.40.47.10
af_Q55DN6_8_385_3.40.47.10 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.9662 5 391 3.40.47.10
3svkB02 Alpha Beta;3-Layer(aba) Sandwich;Peroxisomal Thiolase; Chain A, domain 1;Thiolase/Chalcone synthase 0.966 148 389 3.40.47.10
ID Description Score Start End GO Terms
AF-A0A7J9VHY6-F1-model_v4 Acetyl-CoA C-acetyltransferase (EC 2.3.1.9) 0.9916 265 393 GO:0003985
GO:0017000
AF-A0A1V3WU27-F1-model_v4 Thiolase, C-terminal domain protein 0.991 247 393 GO:0016747
AF-A0A0F0LZF9-F1-model_v4 Beta-ketoadipyl-CoA thiolase (EC 2.3.1.174) 0.9895 1 393 GO:0003677
GO:0003700
GO:0033812
AF-A0A2W5MG23-F1-model_v4 Acetyl-CoA C-acetyltransferase (EC 2.3.1.9) 0.9887 242 393 GO:0003985
AF-A0A0F0LZF9-F1-model_v4 Beta-ketoadipyl-CoA thiolase (EC 2.3.1.174) 0.9871 1 393 GO:0003677
GO:0003700
GO:0033812

Map