F116821

General Info

Members Datasets Scaffolds Average Seq Length
123 58 244 610

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10096340|Ga0065704_100963401
Length 671
Sequence MCVPRRALALRHQFLDGTQDLGAHVNARSLSPIEKGRPHMNLATQSRQTGAGTPSVSAEKACEMAKQLESIGEYNSALDVLNAFWPDPTSQPNTSDLDTRSAANLLLRVGSLLGWLGATGQIDRGQENAKDMITKGINMFEELGHVDGVAEAYSDLALCYWREGAFDEARVNLGEAFQRLGDQSGDLRAGILIRSGMVEATAGRLNEALSFYEEATSFVERSKDDALKGTFHNSLGALLTCLASAANREDYRDRALIEYSAASFHFEQAGNRRYLARVENNLGFLFFIIGQFKDAYTHLDRARHLFLELKDIGAVAQVDDTRARTLLAEGRLKEAERYARQAVKTLEKGDECSLLVEALTTYGTILARIGNHARARALLQRAIDVAETCGDLEGAGRARLSIIEELSNQTSASELALILYAAADLLENSQDPSARQRLIVCGSKVIEALLGAIQKYESPKPTGSWQDFSLRKEIKKIESRFIEQALRDAGGSVSKASRLLGFKHHQSLISLLGARHQDLQDHRSIKRKRNRHLIAPKGRKAGSAGGLRAALTILHVEDHEAFTTLVQEILGGEGVEVDACASGADAWEILKRNDHYDAVIIDNNLPAVSGLELVLRVRSMPHRRNLPIIMLSADDCEKEAWRAGVDAFLRKTEVEQLSSTIARVIDKRGRS

Samples

Sample ID Description Type Environment
1 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
2 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
3 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
23 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
55 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
56 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
57 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
58 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 9.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10096340 3300005289 Unclassified 2446
2 JGI24748J21848_1000014 3300002074 Bacteria 147126
3 JGI24034J26672_10000012 3300002239 Bacteria 146139
4 Ga0065707_10001443 3300005295 Bacteria 6523
5 Ga0068869_100087007 3300005334 Bacteria 2344
6 Ga0070671_100032962 3300005355 Unclassified 4282
7 Ga0070703_10000122 3300005406 Bacteria 40208
8 Ga0070703_10000240 3300005406 Bacteria 26583
9 Ga0070703_10000313 3300005406 Bacteria 22089
10 Ga0070703_10000351 3300005406 Bacteria 20146
11 Ga0070709_10039948 3300005434 Unclassified 2882
12 Ga0070700_100003922 3300005441 Bacteria 7729
13 Ga0070700_100007212 3300005441 Bacteria 5988
14 Ga0070694_100000009 3300005444 Bacteria 93486
15 Ga0070694_100000038 3300005444 Bacteria 60376
16 Ga0070694_100000105 3300005444 Bacteria 40814
17 Ga0070694_100000115 3300005444 Bacteria 39032
18 Ga0070694_100000189 3300005444 Bacteria 32331
19 Ga0070694_100001266 3300005444 Bacteria 14683
20 Ga0070708_100001192 3300005445 Bacteria 19988
21 Ga0070708_100007002 3300005445 Bacteria 8996
22 Ga0070706_100007431 3300005467 Bacteria 10276
23 Ga0070707_100000517 3300005468 Bacteria 38472
24 Ga0070707_100043508 3300005468 Bacteria 4298
25 Ga0070707_100054468 3300005468 Bacteria 3835
26 Ga0070698_100000048 3300005471 Bacteria 84010
27 Ga0070698_100000973 3300005471 Bacteria 31455
28 Ga0070698_100001969 3300005471 Bacteria 22826
29 Ga0070699_100000645 3300005518 Bacteria 32667
30 Ga0070699_100001036 3300005518 Bacteria 25829
31 Ga0070699_100003447 3300005518 Bacteria 13985
32 Ga0070695_100056974 3300005545 Bacteria 2524
33 Ga0070693_100016820 3300005547 Bacteria 3792
34 Ga0070704_100006074 3300005549 Bacteria 7086
35 Ga0068859_100035174 3300005617 Bacteria 5026
36 Ga0068859_100100905 3300005617 Bacteria 2942
37 Ga0068858_100000194 3300005842 Bacteria 64964
38 Ga0068858_100072350 3300005842 Bacteria 3199
39 Ga0068862_100039896 3300005844 Bacteria 3989
40 Ga0070715_10000034 3300006163 Bacteria 80012
41 Ga0070716_100000002 3300006173 Bacteria 396037
42 Ga0070716_100010364 3300006173 Bacteria 4670
43 Ga0075428_100041995 3300006844 Bacteria 5029
44 Ga0075433_10016474 3300006852 Bacteria 6094
45 Ga0075434_100007743 3300006871 Bacteria 9947
46 Ga0075434_100015790 3300006871 Bacteria 7249
47 Ga0075429_100096660 3300006880 Unclassified 2577
48 Ga0075436_100000005 3300006914 Bacteria 360336
49 Ga0075436_100000040 3300006914 Bacteria 81162
50 Ga0075436_100000101 3300006914 Bacteria 50528
51 Ga0097620_100035174 3300006931 Bacteria 5026
52 Ga0097620_100100905 3300006931 Bacteria 2942
53 Ga0075435_100000355 3300007076 Bacteria 28159
54 Ga0075435_100001210 3300007076 Bacteria 16538
55 Ga0075435_100006953 3300007076 Bacteria 8031
56 Ga0075435_100092150 3300007076 Bacteria 2502
57 Ga0105247_10000050 3300009101 Bacteria 146183
58 Ga0114129_10042836 3300009147 Bacteria 6370
59 Ga0105243_10000059 3300009148 Bacteria 129354
60 Ga0105243_10000061 3300009148 Bacteria 127597
61 Ga0105243_10000063 3300009148 Bacteria 127358
62 Ga0105243_10000330 3300009148 Bacteria 51912
63 Ga0105243_10000578 3300009148 Bacteria 36889
64 Ga0105243_10047927 3300009148 Unclassified 3366
65 Ga0105242_10000004 3300009176 Bacteria 224767
66 Ga0105242_10000005 3300009176 Bacteria 201463
67 Ga0105242_10000022 3300009176 Bacteria 111855
68 Ga0105242_10000128 3300009176 Bacteria 55034
69 Ga0105242_10000131 3300009176 Bacteria 54511
70 Ga0105242_10002290 3300009176 Bacteria 15126
71 Ga0105242_10003479 3300009176 Bacteria 12241
72 Ga0105242_10009295 3300009176 Bacteria 7548
73 Ga0105248_10060706 3300009177 Unclassified 4245
74 Ga0105239_10002786 3300010375 Bacteria 21889
75 Ga0157378_10000001 3300013297 Bacteria 352632
76 Ga0157378_10088486 3300013297 Bacteria 2810
77 Ga0163162_10006887 3300013306 Bacteria 11030
78 Ga0163162_10028315 3300013306 Bacteria 5542
79 Ga0163162_10057124 3300013306 Bacteria 3930
80 Ga0207653_10000016 3300025885 Bacteria 145405
81 Ga0207653_10000031 3300025885 Bacteria 111372
82 Ga0207653_10000219 3300025885 Bacteria 37996
83 Ga0207653_10000344 3300025885 Bacteria 23903
84 Ga0207710_10000003 3300025900 Bacteria 1071597
85 Ga0207685_10000008 3300025905 Bacteria 273136
86 Ga0207684_10036397 3300025910 Bacteria 4178
87 Ga0207659_10048458 3300025926 Unclassified 3010
88 Ga0207644_10000093 3300025931 Bacteria 64685
89 Ga0207686_10000005 3300025934 Bacteria 260873
90 Ga0207686_10000009 3300025934 Bacteria 241706
91 Ga0207686_10000012 3300025934 Bacteria 209763
92 Ga0207686_10000013 3300025934 Bacteria 204636
93 Ga0207686_10000020 3300025934 Bacteria 185045
94 Ga0207686_10000232 3300025934 Bacteria 42385
95 Ga0207686_10000398 3300025934 Bacteria 30227
96 Ga0207686_10002527 3300025934 Bacteria 9933
97 Ga0207709_10000009 3300025935 Bacteria 619238
98 Ga0207709_10000048 3300025935 Bacteria 238474
99 Ga0207709_10000060 3300025935 Bacteria 201456
100 Ga0207709_10000088 3300025935 Bacteria 152210
101 Ga0207709_10000721 3300025935 Bacteria 26504
102 Ga0207709_10048988 3300025935 Unclassified 2577
103 Ga0207665_10000004 3300025939 Bacteria 218220
104 Ga0207665_10000598 3300025939 Bacteria 24233
105 Ga0207665_10012361 3300025939 Bacteria 5609
106 Ga0207711_10117922 3300025941 Unclassified 2368
107 Ga0207689_10004377 3300025942 Bacteria 12852
108 Ga0207703_10000225 3300026035 Bacteria 64974
109 Ga0207708_10012997 3300026075 Bacteria 6210
110 Ga0207708_10015468 3300026075 Bacteria 5722
111 Ga0207675_100004141 3300026118 Bacteria 14039
112 Ga0268265_10022449 3300028380 Unclassified 4434
113 nmdc:mga09592_28729_c1 3300050508 Unclassified 4622
114 nmdc:mga0n895_110090_c1 3300050512 Bacteria 2770
115 nmdc:mga0n895_240041_c1 3300050512 Bacteria 1839
116 nmdc:mga0rr50_152_c1 3300050513 Bacteria 37783
117 nmdc:mga0rr50_3833_c1 3300050513 Bacteria 8731
118 nmdc:mga0rr50_79_c1 3300050513 Bacteria 53907
119 nmdc:mga08x19_27_c1 3300050514 Bacteria 226652
120 nmdc:mga08x19_8_c1 3300050514 Bacteria 427794
121 nmdc:mga0a205_54996_c1 3300050515 Bacteria 3844
122 nmdc:mga0a205_73100_c1 3300050515 Unclassified 3313
123 Ga0065704_10096340
124 JGI24748J21848_1000014
125 JGI24034J26672_10000012
126 Ga0065707_10001443
127 Ga0068869_100087007
128 Ga0070671_100032962
129 Ga0070703_10000122
130 Ga0070703_10000240
131 Ga0070703_10000313
132 Ga0070703_10000351
133 Ga0070709_10039948
134 Ga0070700_100003922
135 Ga0070700_100007212
136 Ga0070694_100000009
137 Ga0070694_100000038
138 Ga0070694_100000105
139 Ga0070694_100000115
140 Ga0070694_100000189
141 Ga0070694_100001266
142 Ga0070708_100001192
143 Ga0070708_100007002
144 Ga0070706_100007431
145 Ga0070707_100000517
146 Ga0070707_100043508
147 Ga0070707_100054468
148 Ga0070698_100000048
149 Ga0070698_100000973
150 Ga0070698_100001969
151 Ga0070699_100000645
152 Ga0070699_100001036
153 Ga0070699_100003447
154 Ga0070695_100056974
155 Ga0070693_100016820
156 Ga0070704_100006074
157 Ga0068859_100035174
158 Ga0068859_100100905
159 Ga0068858_100000194
160 Ga0068858_100072350
161 Ga0068862_100039896
162 Ga0070715_10000034
163 Ga0070716_100000002
164 Ga0070716_100010364
165 Ga0075428_100041995
166 Ga0075433_10016474
167 Ga0075434_100007743
168 Ga0075434_100015790
169 Ga0075429_100096660
170 Ga0075436_100000005
171 Ga0075436_100000040
172 Ga0075436_100000101
173 Ga0097620_100035174
174 Ga0097620_100100905
175 Ga0075435_100000355
176 Ga0075435_100001210
177 Ga0075435_100006953
178 Ga0075435_100092150
179 Ga0105247_10000050
180 Ga0114129_10042836
181 Ga0105243_10000059
182 Ga0105243_10000061
183 Ga0105243_10000063
184 Ga0105243_10000330
185 Ga0105243_10000578
186 Ga0105243_10047927
187 Ga0105242_10000004
188 Ga0105242_10000005
189 Ga0105242_10000022
190 Ga0105242_10000128
191 Ga0105242_10000131
192 Ga0105242_10002290
193 Ga0105242_10003479
194 Ga0105242_10009295
195 Ga0105248_10060706
196 Ga0105239_10002786
197 Ga0157378_10000001
198 Ga0157378_10088486
199 Ga0163162_10006887
200 Ga0163162_10028315
201 Ga0163162_10057124
202 Ga0207653_10000016
203 Ga0207653_10000031
204 Ga0207653_10000219
205 Ga0207653_10000344
206 Ga0207710_10000003
207 Ga0207685_10000008
208 Ga0207684_10036397
209 Ga0207659_10048458
210 Ga0207644_10000093
211 Ga0207686_10000005
212 Ga0207686_10000009
213 Ga0207686_10000012
214 Ga0207686_10000013
215 Ga0207686_10000020
216 Ga0207686_10000232
217 Ga0207686_10000398
218 Ga0207686_10002527
219 Ga0207709_10000009
220 Ga0207709_10000048
221 Ga0207709_10000060
222 Ga0207709_10000088
223 Ga0207709_10000721
224 Ga0207709_10048988
225 Ga0207665_10000004
226 Ga0207665_10000598
227 Ga0207665_10012361
228 Ga0207711_10117922
229 Ga0207689_10004377
230 Ga0207703_10000225
231 Ga0207708_10012997
232 Ga0207708_10015468
233 Ga0207675_100004141
234 Ga0268265_10022449
235 nmdc:mga09592_28729_c1
236 nmdc:mga0n895_110090_c1
237 nmdc:mga0n895_240041_c1
238 nmdc:mga0rr50_152_c1
239 nmdc:mga0rr50_3833_c1
240 nmdc:mga0rr50_79_c1
241 nmdc:mga08x19_27_c1
242 nmdc:mga08x19_8_c1
243 nmdc:mga0a205_54996_c1
244 nmdc:mga0a205_73100_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13424

TPR_12

Tetratricopeptide repeat

314

388

0.92

PF00072

Response_reg

Response regulator receiver domain

553

662

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1mav-assembly1.cif.gz_A crystal structure of the response regulator divk at ph 6.0 in complex with mn2+ 0.9212 430 545
6rh1-assembly1.cif.gz_C revisiting ph-gated conformational switch. complex hk853-rr468 d53a ph 7 0.9089 430 545
1mb0-assembly1.cif.gz_A crystal structure of the response regulator divk at ph 8.0 in complex with mn2+ 0.9076 430 545
1m5u-assembly1.cif.gz_A crystal structure of the response regulator divk. structure at ph 8.0 in the apo-form 0.9054 430 545
1m5t-assembly1.cif.gz_A crystal structure of the response regulator divk 0.9054 430 545
ID Description Score Start End Superfamily
af_P08368_2_83_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9267 429 511 3.40.50.2300
af_K7KR51_2_155_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.9063 98 237 1.25.40.10
1m5uA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9054 430 545 3.40.50.2300
af_P76340_1_79_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9052 430 511 3.40.50.2300
af_P0AFJ5_1_84_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9047 430 511 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A2G9ZZ86-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9233 429 544 GO:0000155
GO:0006935
AF-A0A067Z1G5-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9213 430 547 GO:0000155
AF-A0A7C3ACF2-F1-model_v4 Response regulator 0.9212 429 546 GO:0000160
AF-A0A2N3G9U0-F1-model_v4 MerR family transcriptional regulator 0.9199 427 551 GO:0000160
GO:0003677
GO:0006355
AF-A0A0S2TA41-F1-model_v4 Guanylate cyclase 0.917 429 551 GO:0000160
GO:0004016
GO:0006171

Map