F116330

General Info

Members Datasets Scaffolds Average Seq Length
122 100 111 592

Family's Representative Sequence

Representative Sequence 3300061734|Ga0530510_0017674|Ga0530510_0017674_2989_4953
Length 640
Sequence MTHAGSLGAIYLGDGRCRFVVWSPRAERVALHLIVPDERVVALDPLPRGYFAVDVDGVAPGTTYRYRLDDEAEWPDPASRSQPDGVHGPSAVVDPAAFSWTDAAWRGVALRDLVIYELHVGTFSPSGTVDGVIPHLDDLRELGVTAIEVMPVAQFPGARNWGYDGVYPYAVQHSYGGPDGLRRLVDACHARGLAVVLDVVYNHLGPEGNYLSNYGPYFTDRYHTPWGDAVNMDGPHSDEVRRYFIDNALHWVAEYHVDGFRLDATDRIVDQSATHFLRALTTAVHELAGDLGRRVWVIAESAANDAGYILPAALNGYGLDAQWGDDFHHALHALLTGERGGYYADFGELWQLAKAFRQNVVYDGLYSRYRCRTHGNAPRLATPSQFVVATQNHDQVGNRATGDRLNHQVSLESARLAAAAVILSPFLPLLFMGEEYAEHAPFQYFTSHGDPALQRAVSEGRRNEFARFAWQGEVPDPQHEATFRRSKLDHDLKRGGGHQAMLAYYRELLRLRRELPALAARDSATLDAVPFADRQVLLVRRGNAEHETALILNFSEHEEYGDLPLPPGIWRRVLDSADTCWQGAGSAIPSEIKSQGTTRLNLRPRSAALLERVPAAALTPPPPLPTLGEGVPGSERVRPS

Samples

Sample ID Description Type Environment
1 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991444 Filimonas endophytica 3197 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
6 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
7 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
8 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
9 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
10 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
11 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
19 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
20 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
48 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
49 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
50 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
52 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
73 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
76 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
77 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
80 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
84 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
85 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
88 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
93 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
94 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
95 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
96 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
97 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
98 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
99 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
100 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.98
Metatranscriptomes 0
Isolates 9.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.92
Nodule 0
Rhizoplane 1.64
Rhizosphere 80.33
Stem 0
Stem Tuber 0
Unclassified 13.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10026213 3300003320 Bacteria 2179
2 rootL2_10332976 3300003322 Bacteria 4457
3 rootH1_10039656 3300003323 Bacteria 5006
4 rootH1_10122889 3300003323 Bacteria 6771
5 Ga0070683_100013174 3300005329 Bacteria 7201
6 Ga0070670_100000083 3300005331 Bacteria 91017
7 Ga0070670_100036905 3300005331 Bacteria 4205
8 Ga0070666_10015944 3300005335 Bacteria 4800
9 Ga0068868_100000636 3300005338 Bacteria 23642
10 Ga0068868_100001097 3300005338 Bacteria 18530
11 Ga0068868_100116406 3300005338 Bacteria 2177
12 Ga0070691_10004048 3300005341 Bacteria 6642
13 Ga0070692_10025939 3300005345 Bacteria 2893
14 Ga0070707_100008288 3300005468 Bacteria 9645
15 Ga0068855_100053913 3300005563 Bacteria 4730
16 Ga0068857_100006682 3300005577 Bacteria 9913
17 Ga0068857_100166259 3300005577 Bacteria 2003
18 Ga0068854_100003669 3300005578 Bacteria 9603
19 Ga0068854_100014269 3300005578 Bacteria 5234
20 Ga0068856_100020831 3300005614 Bacteria 6373
21 Ga0068852_100057979 3300005616 Bacteria 3352
22 Ga0068860_100000072 3300005843 Bacteria 174997
23 Ga0081538_10003302 3300005981 Bacteria 15303
24 Ga0081538_10010354 3300005981 Bacteria 7650
25 Ga0075431_100086796 3300006847 Bacteria 3229
26 Ga0068865_100049999 3300006881 Bacteria 2886
27 Ga0075436_100018564 3300006914 Bacteria 4760
28 Ga0075435_100002603 3300007076 Bacteria 12040
29 Ga0105240_10000319 3300009093 Bacteria 91429
30 Ga0105240_10009710 3300009093 Bacteria 13586
31 Ga0111539_10250502 3300009094 Bacteria 2062
32 Ga0105245_10000005 3300009098 Bacteria 335871
33 Ga0105237_10001107 3300009545 Bacteria 36103
34 Ga0105237_10001705 3300009545 Bacteria 28418
35 Ga0105237_10019623 3300009545 Bacteria 6981
36 Ga0105238_10000002 3300009551 Bacteria 772711
37 Ga0105239_10000101 3300010375 Bacteria 119610
38 Ga0157370_10068820 3300013104 Bacteria 3345
39 Ga0157369_10035263 3300013105 Bacteria 5486
40 Ga0157374_10000098 3300013296 Bacteria 81487
41 Ga0157378_10000315 3300013297 Bacteria 47352
42 Ga0157372_10001255 3300013307 Bacteria 27453
43 Ga0157372_10001517 3300013307 Bacteria 25239
44 Ga0157372_10018325 3300013307 Bacteria 7525
45 Ga0157375_10000455 3300013308 Bacteria 37098
46 Ga0157377_10000026 3300014745 Bacteria 138648
47 Ga0157376_10000461 3300014969 Bacteria 26300
48 Ga0182005_1000058 3300015265 Bacteria 102314
49 Ga0213873_10002691 3300021358 Bacteria 3105
50 Ga0213876_10000009 3300021384 Bacteria 496136
51 Ga0209436_103681 3300025208 Unclassified 3989
52 Ga0207426_1002638 3300025302 Bacteria 11082
53 Ga0209257_1000001 3300025304 Bacteria 2274655
54 Ga0207680_10035274 3300025903 Unclassified 2870
55 Ga0207647_10026666 3300025904 Bacteria 3777
56 Ga0207695_10011387 3300025913 Bacteria 10781
57 Ga0207671_10002014 3300025914 Bacteria 22347
58 Ga0207671_10007673 3300025914 Bacteria 9317
59 Ga0207646_10011493 3300025922 Bacteria 8570
60 Ga0207694_10000001 3300025924 Bacteria 4078485
61 Ga0207650_10000108 3300025925 Bacteria 109507
62 Ga0207687_10000005 3300025927 Bacteria 770649
63 Ga0207687_10067130 3300025927 Bacteria 2551
64 Ga0207661_10018190 3300025944 Bacteria 5220
65 Ga0207667_10005062 3300025949 Bacteria 16104
66 Ga0207640_10003062 3300025981 Bacteria 9005
67 Ga0207677_10000054 3300026023 Bacteria 99124
68 Ga0207677_10000105 3300026023 Bacteria 69286
69 Ga0207674_10000487 3300026116 Bacteria 52391
70 Ga0207674_10028614 3300026116 Bacteria 5878
71 Ga0207674_10148942 3300026116 Bacteria 2298
72 Ga0207698_10040728 3300026142 Bacteria 3455
73 Ga0268266_10000088 3300028379 Bacteria 199029
74 Ga0268264_10000201 3300028381 Bacteria 122060
75 Ga0268264_10003372 3300028381 Bacteria 13801
76 Ga0307406_10033537 3300031901 Bacteria 3144
77 Ga0373932_0000454 3300035112 Bacteria 12519
78 Ga0436365_0197039 3300039437 Bacteria 92371
79 Ga0436360_1374062 3300039438 Bacteria 2689
80 Ga0436362_0182353 3300039453 Bacteria 5771
81 Ga0466959_0015958 3300045049 Bacteria 5481
82 Ga0496109_0074368 3300048912 Bacteria 3123
83 Ga0496113_0020780 3300048916 Bacteria 4623
84 Ga0496116_0009001 3300048919 Bacteria 8580
85 Ga0496117_0002184 3300048920 Bacteria 25519
86 Ga0496121_0000054 3300048924 Bacteria 307236
87 Ga0496126_0021488 3300048929 Bacteria 6303
88 Ga0501037_0000020 3300049573 Bacteria 155468
89 Ga0501043_0000156 3300049579 Bacteria 62295
90 Ga0501067_0000059 3300049583 Bacteria 64025
91 Ga0501068_0000174 3300049584 Bacteria 30046
92 Ga0501069_0000520 3300049585 Bacteria 17598
93 Ga0501070_0089337 3300049586 Bacteria 2550
94 Ga0501071_0022405 3300049587 Bacteria 4405
95 Ga0501073_0072117 3300049589 Bacteria 2405
96 Ga0501075_0050845 3300049591 Bacteria 3116
97 Ga0501076_0010070 3300049592 Bacteria 6998
98 Ga0501044_0000095 3300049823 Bacteria 109588
99 Ga0501044_0002526 3300049823 Bacteria 20828
100 Ga0501044_0112308 3300049823 Bacteria 2732
101 nmdc:mga06r32_85195_c1 3300050510 Bacteria 3081
102 nmdc:mga08y16_194184_c1 3300050511 Bacteria 2105
103 nmdc:mga0rr50_10022_c1 3300050513 Bacteria 5995
104 nmdc:mga08x19_417_c1 3300050514 Bacteria 15212
105 nmdc:mga0a205_37794_c1 3300050515 Bacteria 4642
106 Ga0500616_0070296 3300053153 Bacteria 1787
107 Ga0500622_0000659 3300053156 Bacteria 30725
108 Ga0500622_0002993 3300053156 Bacteria 11711
109 Ga0466962_0004032 3300061719 Bacteria 7029
110 Ga0530510_0002055 3300061734 Bacteria 13814
111 Ga0530510_0017674 3300061734 Bacteria 5053

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049589 Ga0501073_0072117 Ga0501073_0072117_85_1950 512
2 3300006914 Ga0075436_100018564 Ga0075436_1000185642 522
3 3300007076 Ga0075435_100002603 Ga0075435_1000026036 522
4 3300049823 Ga0501044_0002526 Ga0501044_0002526_7306_8943 526
5 3300009093 Ga0105240_10009710 Ga0105240_100097104 528
6 3300009545 Ga0105237_10001107 Ga0105237_1000110729 528
7 3300053153 Ga0500616_0070296 Ga0500616_0070296_69_1703 528
8 3300049591 Ga0501075_0050845 Ga0501075_0050845_29_1756 536
9 3300049592 Ga0501076_0010070 Ga0501076_0010070_1581_3308 537
10 3300049579 Ga0501043_0000156 Ga0501043_0000156_32148_33854 539
11 3300049573 Ga0501037_0000020 Ga0501037_0000020_132114_133820 540
12 3300049823 Ga0501044_0000095 Ga0501044_0000095_37164_38870 540
13 3300005577 Ga0068857_100006682 Ga0068857_1000066822 541
14 3300026116 Ga0207674_10148942 Ga0207674_101489422 541
15 3300035112 Ga0373932_0000454 Ga0373932_0000454_3037_4674 543
16 3300005338 Ga0068868_100001097 Ga0068868_1000010978 546
17 3300026023 Ga0207677_10000054 Ga0207677_1000005482 546
18 3300003323 rootH1_10122889 rootH1_101228894 559
19 3300005578 Ga0068854_100014269 Ga0068854_1000142694 559
20 3300025304 Ga0209257_1000001 Ga0209257_1000001637 559
21 3300025949 Ga0207667_10005062 Ga0207667_100050626 559
22 3300026116 Ga0207674_10000487 Ga0207674_1000048748 559
23 3300048929 Ga0496126_0021488 Ga0496126_0021488_4398_6230 559
24 3300050513 nmdc:mga0rr50_10022_c1 nmdc:mga0rr50_10022_c1_3515_5275 563
25 3300050514 nmdc:mga08x19_417_c1 nmdc:mga08x19_417_c1_2759_4519 563
26 3300013297 Ga0157378_10000315 Ga0157378_1000031523 568
27 3300028381 Ga0268264_10003372 Ga0268264_100033722 568
28 3300009551 Ga0105238_10000002 Ga0105238_10000002428 574
29 3300013296 Ga0157374_10000098 Ga0157374_1000009815 574
30 3300013308 Ga0157375_10000455 Ga0157375_1000045511 574
31 3300014745 Ga0157377_10000026 Ga0157377_1000002659 574
32 3300021358 Ga0213873_10002691 Ga0213873_100026912 574
33 3300021384 Ga0213876_10000009 Ga0213876_10000009140 574
34 3300025924 Ga0207694_10000001 Ga0207694_10000001427 574
35 3300039437 Ga0436365_0197039 Ga0436365_0197039_86407_88269 574
36 3300039453 Ga0436362_0182353 Ga0436362_0182353_2472_4334 574
37 3300048912 Ga0496109_0074368 Ga0496109_0074368_62_1807 574
38 3300048916 Ga0496113_0020780 Ga0496113_0020780_748_2493 574
39 3300005331 Ga0070670_100036905 Ga0070670_1000369052 575
40 3300053156 Ga0500622_0002993 Ga0500622_0002993_5156_6898 575
41 3300005331 Ga0070670_100000083 Ga0070670_10000008359 577
42 3300005338 Ga0068868_100000636 Ga0068868_1000006365 577
43 3300005578 Ga0068854_100003669 Ga0068854_1000036695 577
44 3300014969 Ga0157376_10000461 Ga0157376_1000046114 577
45 3300025925 Ga0207650_10000108 Ga0207650_1000010835 577
46 3300025981 Ga0207640_10003062 Ga0207640_100030625 577
47 3300026023 Ga0207677_10000105 Ga0207677_1000010540 577
48 3300009094 Ga0111539_10250502 Ga0111539_102505022 578
49 3300050511 nmdc:mga08y16_194184_c1 nmdc:mga08y16_194184_c1_295_2070 578
50 3300009098 Ga0105245_10000005 Ga0105245_1000000573 579
51 3300025927 Ga0207687_10000005 Ga0207687_10000005327 579
52 3300005468 Ga0070707_100008288 Ga0070707_1000082886 582
53 3300025922 Ga0207646_10011493 Ga0207646_100114932 582
54 3300049583 Ga0501067_0000059 Ga0501067_0000059_42808_44637 587
55 3300049584 Ga0501068_0000174 Ga0501068_0000174_9757_11586 587
56 3300049585 Ga0501069_0000520 Ga0501069_0000520_11908_13737 587
57 3300049586 Ga0501070_0089337 Ga0501070_0089337_69_1898 587
58 3300049587 Ga0501071_0022405 Ga0501071_0022405_2005_3834 587
59 3300061734 Ga0530510_0002055 Ga0530510_0002055_6649_8478 587
60 3300049823 Ga0501044_0112308 Ga0501044_0112308_508_2397 589
61 3300005329 Ga0070683_100013174 Ga0070683_1000131742 590
62 3300050515 nmdc:mga0a205_37794_c1 nmdc:mga0a205_37794_c1_1592_3385 590
63 3300053156 Ga0500622_0000659 Ga0500622_0000659_945_2750 590
64 iso_pu_bacteria 2929154850 2929158188 590
65 iso_pu_bacteria 2818991444 2819587792 592
66 iso_pu_bacteria 2929177148 2929179231 592
67 iso_pu_bacteria 2945977869 2945981635 592
68 iso_pu_bacteria 2946013367 2946018961 592
69 iso_pu_bacteria 2818991442 2819574265 594
70 iso_pu_bacteria 2904467357 2904467674 594
71 3300005338 Ga0068868_100116406 Ga0068868_1001164062 595
72 3300005345 Ga0070692_10025939 Ga0070692_100259392 595
73 3300006881 Ga0068865_100049999 Ga0068865_1000499992 596
74 3300009545 Ga0105237_10001705 Ga0105237_100017057 597
75 3300015265 Ga0182005_1000058 Ga0182005_100005856 597
76 3300025208 Ga0209436_103681 Ga0209436_1036812 597
77 3300025302 Ga0207426_1002638 Ga0207426_10026383 597
78 3300025914 Ga0207671_10002014 Ga0207671_1000201416 597
79 3300048924 Ga0496121_0000054 Ga0496121_0000054_243940_245760 597
80 iso_pu_bacteria 2721755487 2722729089 597
81 iso_pu_bacteria 2821136567 2821137587 597
82 iso_pu_bacteria 2904780799 2904785731 597
83 iso_pu_bacteria 2919177583 2919182389 597
84 3300005563 Ga0068855_100053913 Ga0068855_1000539132 598
85 3300005843 Ga0068860_100000072 Ga0068860_10000007262 598
86 3300009545 Ga0105237_10019623 Ga0105237_100196234 598
87 3300010375 Ga0105239_10000101 Ga0105239_1000010157 598
88 3300013307 Ga0157372_10001255 Ga0157372_1000125515 598
89 3300028381 Ga0268264_10000201 Ga0268264_1000020162 598
90 3300005335 Ga0070666_10015944 Ga0070666_100159442 599
91 3300005341 Ga0070691_10004048 Ga0070691_100040483 599
92 3300005614 Ga0068856_100020831 Ga0068856_1000208312 599
93 3300005616 Ga0068852_100057979 Ga0068852_1000579792 599
94 3300009093 Ga0105240_10000319 Ga0105240_1000031937 599
95 3300013104 Ga0157370_10068820 Ga0157370_100688202 599
96 3300013105 Ga0157369_10035263 Ga0157369_100352632 599
97 3300013307 Ga0157372_10001517 Ga0157372_100015176 599
98 3300013307 Ga0157372_10018325 Ga0157372_100183253 599
99 3300025903 Ga0207680_10035274 Ga0207680_100352741 599
100 3300025904 Ga0207647_10026666 Ga0207647_100266662 599
101 3300025913 Ga0207695_10011387 Ga0207695_1001138710 599
102 3300025914 Ga0207671_10007673 Ga0207671_1000767310 599
103 3300026142 Ga0207698_10040728 Ga0207698_100407282 599
104 3300028379 Ga0268266_10000088 Ga0268266_10000088115 599
105 3300045049 Ga0466959_0015958 Ga0466959_0015958_2833_4653 599
106 3300048919 Ga0496116_0009001 Ga0496116_0009001_4646_6463 599
107 3300048920 Ga0496117_0002184 Ga0496117_0002184_17418_19235 599
108 3300061719 Ga0466962_0004032 Ga0466962_0004032_1965_3785 599
109 3300003323 rootH1_10039656 rootH1_100396562 600
110 3300039438 Ga0436360_1374062 Ga0436360_1374062_183_2120 600
111 3300061734 Ga0530510_0017674 Ga0530510_0017674_2989_4953 600
112 3300003322 rootL2_10332976 rootL2_103329762 601
113 3300005577 Ga0068857_100166259 Ga0068857_1001662591 601
114 3300025927 Ga0207687_10067130 Ga0207687_100671301 601
115 3300025944 Ga0207661_10018190 Ga0207661_100181903 601
116 3300026116 Ga0207674_10028614 Ga0207674_100286142 601
117 3300005981 Ga0081538_10003302 Ga0081538_100033026 602
118 3300005981 Ga0081538_10010354 Ga0081538_100103545 602
119 3300006847 Ga0075431_100086796 Ga0075431_1000867962 602
120 3300031901 Ga0307406_10033537 Ga0307406_100335371 602
121 3300050510 nmdc:mga06r32_85195_c1 nmdc:mga06r32_85195_c1_441_2321 602
122 3300003320 rootH2_10026213 rootH2_100262132 603

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

127

235

0.91

PF02922

CBM_48

Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

6

90

0.89

PF11941

DUF3459

Domain of unknown function (DUF3459)

504

610

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vgd-assembly1.cif.gz_A ctystal structure of glycosyltrehalose trehalohydrolase (d252e) 0.9541 8 599
1eh9-assembly1.cif.gz_A-2 crystal structure of sulfolobus solfataricus glycosyltrehalose trehalohydrolase 0.9525 8 599
3vgg-assembly1.cif.gz_A crystal structure of glycosyltrehalose trehalohydrolase (e283q) complexed with maltoheptaose 0.952 10 599
3vge-assembly1.cif.gz_A crystal structure of glycosyltrehalose trehalohydrolase (d252s) 0.9516 8 599
3vgd-assembly1.cif.gz_A ctystal structure of glycosyltrehalose trehalohydrolase (d252e) 0.9508 8 599
ID Description Score Start End Superfamily
3vghA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.988 107 511 3.20.20.80
3vghA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9636 107 511 3.20.20.80
2by0A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9537 102 518 3.20.20.80
3vggA01 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9483 10 93 2.60.40.10
2by0A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9461 102 518 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A6G3XT91-F1-model_v4 Malto-oligosyltrehalose trehalohydrolase 0.9959 192 329 GO:0005737
GO:0016787
AF-A0A2S8LQV3-F1-model_v4 deleted 0.9924 191 322
AF-A0A060CN59-F1-model_v4 Alpha-amylase 0.9901 164 316 GO:0005737
GO:0005975
GO:0016787
AF-A0A846NST0-F1-model_v4 deleted 0.9876 5 360
AF-A0A0S7ZI69-F1-model_v4 Malto-oligosyltrehalose trehalohydrolase 0.9871 5 362 GO:0005737
GO:0005975
GO:0016787

Feature Viewer

pLDDT pTM Quality
92.87 0.93 High
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Predicted Structure (AlphaFold2)

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