F115144

General Info

Members Datasets Scaffolds Average Seq Length
122 43 244 311

Family's Representative Sequence

Representative Sequence 3300035398|Ga0316574_0249526|Ga0316574_0249526_28_1059
Length 343
Sequence MLIVSAVCQGAQGHVNPCRLIHSQSDRKVYLLFEFLFLGTSASAPSVHRGLSAQIVLHDEYRFLIDCGEGTQRQILQAGVGFKRLNRILITHGHLDHILGLAGLLSTFMRWEAIEEIEIYGGRSTLDRVHDLLYGVVLRGIRPPVEIKLLEIKPGLIFEADNFSVTAFPVSHRGPDCYGFSFEEKSRRPFLAEKAEALAIPPGPWRRDIVAGKTVTLLDGRLITPDQVLGPERPGTKFVQVGDTGQTDNLVEHVQGADTLVIESTYLVQESDMANRFGHLTAARAAQLAVEADVQHLILTHLSRRYRERDILAEARAIFPNSYVARDFDAYQILRGTCEKVEG

Samples

Sample ID Description Type Environment
1 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
2 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
8 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
9 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
10 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
11 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
16 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
17 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
18 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
19 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
20 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
21 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
22 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
23 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
24 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
25 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
27 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
28 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
29 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
30 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
31 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
32 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
33 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
34 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
35 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
36 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
37 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
38 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
39 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
40 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
41 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
42 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
43 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.18
Metatranscriptomes 0.82
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 97.54
Stem 0
Stem Tuber 0
Unclassified 9.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316574_0249526 3300035398 Bacteria 1134
2 Ga0070709_10011968 3300005434 Bacteria 4848
3 Ga0070714_100003595 3300005435 Bacteria 11600
4 Ga0070710_10001886 3300005437 Bacteria 9905
5 Ga0070707_100039858 3300005468 Bacteria 4492
6 Ga0070707_100397059 3300005468 Unclassified 1339
7 Ga0070707_100472513 3300005468 Bacteria 1215
8 Ga0070698_100003471 3300005471 Bacteria 17352
9 Ga0070717_10000843 3300006028 Bacteria 20295
10 Ga0070716_100106714 3300006173 Bacteria 1728
11 Ga0075431_100002422 3300006847 Bacteria 17951
12 Ga0114129_10047195 3300009147 Bacteria 6053
13 Ga0114129_10282617 3300009147 Bacteria 2217
14 Ga0207699_10086023 3300025906 Bacteria 1962
15 Ga0207693_10006417 3300025915 Bacteria 9746
16 Ga0207700_10226183 3300025928 Bacteria 1588
17 Ga0207664_10129283 3300025929 Bacteria 2124
18 Ga0207664_10278000 3300025929 Unclassified 1468
19 Ga0265323_10037940 3300028653 Bacteria 1763
20 Ga0265323_10084979 3300028653 Bacteria 1065
21 Ga0265316_10321723 3300031344 Bacteria 1124
22 Ga0316575_10033451 3300031665 Bacteria 2016
23 Ga0316575_10074149 3300031665 Bacteria 1369
24 Ga0316579_10003209 3300031691 Bacteria 6330
25 Ga0316579_10006430 3300031691 Bacteria 4797
26 Ga0316579_10023578 3300031691 Bacteria 2764
27 Ga0316579_10042560 3300031691 Bacteria 2110
28 Ga0316576_10000016 3300031727 Bacteria 46968
29 Ga0316576_10002197 3300031727 Bacteria 11014
30 Ga0316576_10011536 3300031727 Bacteria 5796
31 Ga0316576_10015739 3300031727 Bacteria 5084
32 Ga0316576_10040566 3300031727 Unclassified 3347
33 Ga0316576_10122193 3300031727 Bacteria 1956
34 Ga0316576_10320311 3300031727 Bacteria 1157
35 Ga0316578_10000658 3300031728 Bacteria 12255
36 Ga0316578_10007589 3300031728 Bacteria 5451
37 Ga0316578_10015399 3300031728 Bacteria 4111
38 Ga0316578_10016212 3300031728 Bacteria 4027
39 Ga0316578_10026355 3300031728 Bacteria 3278
40 Ga0316578_10026913 3300031728 Bacteria 3246
41 Ga0316578_10052249 3300031728 Unclassified 2394
42 Ga0316577_10000315 3300031733 Bacteria 17702
43 Ga0316577_10001271 3300031733 Bacteria 11777
44 Ga0316577_10003057 3300031733 Bacteria 8394
45 Ga0316577_10005951 3300031733 Bacteria 6424
46 Ga0316577_10008492 3300031733 Bacteria 5508
47 Ga0316577_10015371 3300031733 Bacteria 4211
48 Ga0316577_10019388 3300031733 Bacteria 3763
49 Ga0316577_10019512 3300031733 Bacteria 3753
50 Ga0316583_10000046 3300032133 Bacteria 23863
51 Ga0316585_10002869 3300032137 Unclassified 4699
52 Ga0316585_10005883 3300032137 Bacteria 3481
53 Ga0316585_10021056 3300032137 Bacteria 2001
54 Ga0316580_10000449 3300032139 Bacteria 9450
55 Ga0316580_10008841 3300032139 Unclassified 3024
56 Ga0316596_1011139 3300033541 Bacteria 2191
57 Ga0316574_0000036 3300035398 Bacteria 33414
58 Ga0316574_0001928 3300035398 Bacteria 10164
59 Ga0316574_0042331 3300035398 Bacteria 2810
60 Ga0316574_0067280 3300035398 Bacteria 2258
61 Ga0316574_0186914 3300035398 Unclassified 1332
62 Ga0316574_0213668 3300035398 Unclassified 1237
63 Ga0316582_0002431 3300036647 Bacteria 8747
64 Ga0316582_0004199 3300036647 Bacteria 7225
65 Ga0316582_0008156 3300036647 Bacteria 5615
66 Ga0316582_0008502 3300036647 Bacteria 5524
67 Ga0316582_0009492 3300036647 Bacteria 5283
68 Ga0316582_0066552 3300036647 Bacteria 2323
69 Ga0316582_0067463 3300036647 Bacteria 2308
70 Ga0316582_0074677 3300036647 Bacteria 2202
71 Ga0316582_0079371 3300036647 Bacteria 2140
72 Ga0316582_0088198 3300036647 Bacteria 2037
73 Ga0316582_0138567 3300036647 Bacteria 1639
74 Ga0316582_0242070 3300036647 Bacteria 1236
75 Ga0316584_0000108 3300036712 Bacteria 34493
76 Ga0316584_0000332 3300036712 Bacteria 24333
77 Ga0316584_0002822 3300036712 Bacteria 11137
78 Ga0316584_0003018 3300036712 Bacteria 10835
79 Ga0316584_0004712 3300036712 Bacteria 9047
80 Ga0316584_0028032 3300036712 Bacteria 4149
81 Ga0316584_0058279 3300036712 Bacteria 2892
82 Ga0316584_0090859 3300036712 Bacteria 2286
83 Ga0316584_0143783 3300036712 Bacteria 1778
84 Ga0316584_0159435 3300036712 Bacteria 1677
85 Ga0316584_0299774 3300036712 Bacteria 1164
86 Ga0316584_0349135 3300036712 Bacteria 1062
87 Ga0316584_0396696 3300036712 Bacteria 984
88 Ga0316581_0005867 3300037588 Unclassified 3228
89 Ga0316581_0013615 3300037588 Bacteria 2308
90 Ga0436364_1146455 3300037853 Bacteria 3827
91 Ga0400487_26235 3300039110 Bacteria 1316
92 Ga0436360_1010188 3300039438 Bacteria 1646
93 Ga0436361_0303752 3300039447 Bacteria 995
94 Ga0436361_0440876 3300039447 Bacteria 2048
95 Ga0436363_0464444 3300039450 Bacteria 1520
96 Ga0436362_0652562 3300039453 Bacteria 1193
97 Ga0451577_0108021 3300042876 Unclassified 2488
98 Ga0451577_0173649 3300042876 Unclassified 1942
99 Ga0451577_0284100 3300042876 Bacteria 1499
100 Ga0453684_0000047 3300044712 Bacteria 560243
101 Ga0453684_0000265 3300044712 Bacteria 225591
102 Ga0453684_0001360 3300044712 Bacteria 71203
103 Ga0453684_0002452 3300044712 Bacteria 45012
104 Ga0453684_0002949 3300044712 Bacteria 39895
105 Ga0453684_0035318 3300044712 Bacteria 6912
106 Ga0453684_0056896 3300044712 Bacteria 5069
107 Ga0453684_0135456 3300044712 Bacteria 2950
108 Ga0453684_0188499 3300044712 Unclassified 2414
109 Ga0453684_0190699 3300044712 Bacteria 2398
110 Ga0453684_0202538 3300044712 Bacteria 2313
111 Ga0453684_0427550 3300044712 Bacteria 1478
112 Ga0451576_0009913 3300045051 Bacteria 11000
113 Ga0451576_0054131 3300045051 Bacteria 4202
114 Ga0451576_0496465 3300045051 Bacteria 1282
115 Ga0466967_0222801 3300045976 Bacteria 1793
116 Ga0501073_0011267 3300049589 Bacteria 6542
117 Ga0501073_0020348 3300049589 Bacteria 4787
118 Ga0501080_0413486 3300049742 Bacteria 1212
119 nmdc:mga05p37_640035_c1 3300050507 Bacteria 1193
120 nmdc:mga06r32_76562_c1 3300050510 Bacteria 3249
121 nmdc:mga06r32_981_c2 3300050510 Bacteria 13807
122 Ga0501084_0000183 3300054114 Bacteria 48760
123 Ga0316574_0249526
124 Ga0070709_10011968
125 Ga0070714_100003595
126 Ga0070710_10001886
127 Ga0070707_100039858
128 Ga0070707_100397059
129 Ga0070707_100472513
130 Ga0070698_100003471
131 Ga0070717_10000843
132 Ga0070716_100106714
133 Ga0075431_100002422
134 Ga0114129_10047195
135 Ga0114129_10282617
136 Ga0207699_10086023
137 Ga0207693_10006417
138 Ga0207700_10226183
139 Ga0207664_10129283
140 Ga0207664_10278000
141 Ga0265323_10037940
142 Ga0265323_10084979
143 Ga0265316_10321723
144 Ga0316575_10033451
145 Ga0316575_10074149
146 Ga0316579_10003209
147 Ga0316579_10006430
148 Ga0316579_10023578
149 Ga0316579_10042560
150 Ga0316576_10000016
151 Ga0316576_10002197
152 Ga0316576_10011536
153 Ga0316576_10015739
154 Ga0316576_10040566
155 Ga0316576_10122193
156 Ga0316576_10320311
157 Ga0316578_10000658
158 Ga0316578_10007589
159 Ga0316578_10015399
160 Ga0316578_10016212
161 Ga0316578_10026355
162 Ga0316578_10026913
163 Ga0316578_10052249
164 Ga0316577_10000315
165 Ga0316577_10001271
166 Ga0316577_10003057
167 Ga0316577_10005951
168 Ga0316577_10008492
169 Ga0316577_10015371
170 Ga0316577_10019388
171 Ga0316577_10019512
172 Ga0316583_10000046
173 Ga0316585_10002869
174 Ga0316585_10005883
175 Ga0316585_10021056
176 Ga0316580_10000449
177 Ga0316580_10008841
178 Ga0316596_1011139
179 Ga0316574_0000036
180 Ga0316574_0001928
181 Ga0316574_0042331
182 Ga0316574_0067280
183 Ga0316574_0186914
184 Ga0316574_0213668
185 Ga0316582_0002431
186 Ga0316582_0004199
187 Ga0316582_0008156
188 Ga0316582_0008502
189 Ga0316582_0009492
190 Ga0316582_0066552
191 Ga0316582_0067463
192 Ga0316582_0074677
193 Ga0316582_0079371
194 Ga0316582_0088198
195 Ga0316582_0138567
196 Ga0316582_0242070
197 Ga0316584_0000108
198 Ga0316584_0000332
199 Ga0316584_0002822
200 Ga0316584_0003018
201 Ga0316584_0004712
202 Ga0316584_0028032
203 Ga0316584_0058279
204 Ga0316584_0090859
205 Ga0316584_0143783
206 Ga0316584_0159435
207 Ga0316584_0299774
208 Ga0316584_0349135
209 Ga0316584_0396696
210 Ga0316581_0005867
211 Ga0316581_0013615
212 Ga0436364_1146455
213 Ga0400487_26235
214 Ga0436360_1010188
215 Ga0436361_0303752
216 Ga0436361_0440876
217 Ga0436363_0464444
218 Ga0436362_0652562
219 Ga0451577_0108021
220 Ga0451577_0173649
221 Ga0451577_0284100
222 Ga0453684_0000047
223 Ga0453684_0000265
224 Ga0453684_0001360
225 Ga0453684_0002452
226 Ga0453684_0002949
227 Ga0453684_0035318
228 Ga0453684_0056896
229 Ga0453684_0135456
230 Ga0453684_0188499
231 Ga0453684_0190699
232 Ga0453684_0202538
233 Ga0453684_0427550
234 Ga0451576_0009913
235 Ga0451576_0054131
236 Ga0451576_0496465
237 Ga0466967_0222801
238 Ga0501073_0011267
239 Ga0501073_0020348
240 Ga0501080_0413486
241 nmdc:mga05p37_640035_c1
242 nmdc:mga06r32_76562_c1
243 nmdc:mga06r32_981_c2
244 Ga0501084_0000183

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

227

302

0.9

PF13691

Lactamase_B_4

tRNase Z endonuclease

49

100

0.9

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

61

228

0.82

PF00753

Lactamase_B

Metallo-beta-lactamase superfamily

49

255

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gcw-assembly1.cif.gz_A crystal structure of rnase z in complex with precursor trna(thr) 0.884 3 301
6kns-assembly3.cif.gz_C-2 crystal structure of the metallo-beta-lactamase fold protein yhfi from bacillus subtilis (space group i4122) 0.8824 2 298
2fk6-assembly1.cif.gz_A-2 crystal structure of rnase z/trna(thr) complex 0.8808 3 300
1y44-assembly1.cif.gz_A crystal structure of rnase z 0.8698 3 300
2cbn-assembly1.cif.gz_A-2 crystal structure of zipd from escherichia coli 0.8667 1 300
ID Description Score Start End Superfamily
af_P0A8V0_1_305_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9068 3 300 3.60.15.10
af_P0A8V0_1_305_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8844 3 300 3.60.15.10
af_Q2FY67_1_306_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8491 3 299 3.60.15.10
1zkpC00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8467 4 299 3.60.15.10
1zkpC00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8368 4 299 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A847XZ50-F1-model_v4 Ribonuclease Z 0.9867 205 304 GO:0042781
AF-A0A7W0SEA4-F1-model_v4 Ribonuclease Z 0.9691 205 296 GO:0042781
AF-A0A3M1DNK6-F1-model_v4 Ribonuclease Z 0.9588 1 268 GO:0042781
GO:0046872
AF-A0A212QNM6-F1-model_v4 Ribonuclease Z (RNase Z) (EC 3.1.26.11) (tRNA 3 endonuclease) (tRNase Z) 0.9579 1 297 GO:0008270
GO:0042781
AF-A0A381G933-F1-model_v4 deleted 0.9535 197 300

Map