F115054

General Info

Members Datasets Scaffolds Average Seq Length
122 99 244 314

Family's Representative Sequence

Representative Sequence 3300033180|Ga0307510_10012458|Ga0307510_100124589
Length 351
Sequence MRTVLVVLFDDVQSLDITGPVEVFAGAEKQAPGAYRIRTASLDGGPVRTSSGLNVVPDSTLAAAPAPHTLLVPGGPGTRAPDPRVTDWLRAHGPRAERLVSVCTGAILLAEAGLLDGRRATTHWAYCAKLARDHPTIEVDPDPIYVRDGPVSTSAGVTSGIDLALALVEEDLGRDTALTIARHLVVFLRRPGNQTQFSAQLAAQTARREPLREVQQWITEHPDDDLSIDSLATRARLSPRHFARAFQAETGMTPGRYVDRVRLEHARRLLEDTGDGVEEISRASGYGTPESMRRAFLKSLGAAPAEYRRRFHPSPAQRARTAPLQGRGAESICGSAAGRDQPPLTRSERTT

Samples

Sample ID Description Type Environment
1 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
7 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
10 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
11 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
12 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
15 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
16 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
17 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
18 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
19 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
20 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
21 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
22 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
23 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
24 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
25 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
26 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
27 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
28 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
29 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
30 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
31 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
32 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
33 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
34 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
35 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
36 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
37 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
38 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
39 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
40 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
41 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
42 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
43 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
44 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
45 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
46 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
47 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
48 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
49 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
50 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
55 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
56 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
58 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
59 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
61 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
62 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
63 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
64 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
65 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
66 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
67 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
68 2643221647 Streptomyces sp. Root369 Isolate Unclassified
69 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
70 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
71 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
72 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
73 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
74 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
75 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
76 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
77 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
78 2862574272 Streptomyces sp. AcE210 Isolate Nodule
79 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
80 2867428634 Streptomyces sp. RP5T Isolate Unclassified
81 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
82 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
83 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
84 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
85 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
86 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
87 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
88 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
89 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
90 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
91 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
92 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
93 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
94 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
95 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
96 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
97 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
98 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
99 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 69.67
Metatranscriptomes 0
Isolates 30.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.74
Nodule 2.46
Rhizoplane 0
Rhizosphere 63.93
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307510_10012458 3300033180 Bacteria 10086
2 rootH1_10009371 3300003316 Bacteria 8275
3 rootH2_10042804 3300003320 Bacteria 2458
4 JGI25160J50197_1017952 3300003354 Bacteria 2221
5 Ga0070679_100028993 3300005530 Bacteria 5460
6 Ga0070664_100321065 3300005564 Bacteria 1403
7 Ga0075368_10001869 3300006042 Bacteria 6762
8 Ga0075367_10000861 3300006178 Bacteria 12124
9 Ga0183367_1001 3300015688 Bacteria 1225545
10 Ga0209758_1006018 3300025297 Bacteria 8961
11 Ga0207426_1007960 3300025302 Bacteria 4360
12 Ga0207426_1021809 3300025302 Bacteria 2208
13 Ga0207652_10330828 3300025921 Bacteria 1376
14 Ga0207687_10198040 3300025927 Bacteria 1568
15 Ga0207679_10223750 3300025945 Bacteria 1585
16 Ga0307511_10000150 3300030521 Bacteria 66178
17 Ga0307511_10020233 3300030521 Bacteria 6307
18 Ga0307512_10002523 3300030522 Bacteria 22925
19 Ga0307513_10098398 3300031456 Bacteria 2957
20 Ga0307509_10027972 3300031507 Bacteria 6269
21 Ga0307509_10042066 3300031507 Bacteria 4953
22 Ga0307509_10091524 3300031507 Bacteria 3112
23 Ga0307508_10003603 3300031616 Bacteria 15559
24 Ga0307508_10273273 3300031616 Bacteria 1283
25 Ga0307516_10020277 3300031730 Bacteria 6870
26 Ga0307518_10061836 3300031838 Bacteria 2719
27 Ga0307518_10107360 3300031838 Bacteria 1992
28 Ga0307518_10130144 3300031838 Bacteria 1770
29 Ga0307411_10138718 3300032005 Bacteria 1790
30 Ga0395898_0150472 3300037466 Bacteria 2227
31 Ga0451853_0790036 3300041512 Bacteria 4231
32 Ga0451853_3448186 3300041512 Bacteria 1433
33 Ga0439456_024664 3300042013 Bacteria 1276
34 Ga0450903_000431 3300042138 Bacteria 8991
35 Ga0466972_0000509 3300044658 Bacteria 19328
36 Ga0466972_0029107 3300044658 Bacteria 2721
37 Ga0466972_0036735 3300044658 Bacteria 2395
38 Ga0466965_0003123 3300044683 Bacteria 7223
39 Ga0466966_0004171 3300044684 Bacteria 9546
40 Ga0466961_0005123 3300044693 Bacteria 8248
41 Ga0466963_0046157 3300044694 Bacteria 2871
42 Ga0466963_0142086 3300044694 Bacteria 1663
43 Ga0466970_0000573 3300044765 Bacteria 17967
44 Ga0466957_0003255 3300044842 Bacteria 8889
45 Ga0466960_0004376 3300044901 Bacteria 5518
46 Ga0466959_0006628 3300045049 Bacteria 8042
47 Ga0466958_0006347 3300045836 Bacteria 6428
48 Ga0466967_0008209 3300045976 Bacteria 7626
49 Ga0466967_0009983 3300045976 Bacteria 7089
50 Ga0495603_0063502 3300046455 Bacteria 2178
51 Ga0495603_0149406 3300046455 Bacteria 1358
52 Ga0495629_0085141 3300046459 Bacteria 2206
53 Ga0495639_0053006 3300046475 Bacteria 1847
54 Ga0495662_0041627 3300046476 Bacteria 2218
55 Ga0495585_0019985 3300046492 Bacteria 3853
56 Ga0495594_0009887 3300046499 Bacteria 4942
57 Ga0495589_0010677 3300046794 Bacteria 4773
58 Ga0495636_0015165 3300047318 Bacteria 3070
59 Ga0495676_0013340 3300047321 Bacteria 7381
60 Ga0495687_002292 3300047443 Bacteria 15648
61 Ga0495687_014426 3300047443 Bacteria 4069
62 Ga0501032_0067981 3300049569 Bacteria 2379
63 Ga0501036_0141772 3300049572 Bacteria 2028
64 Ga0501037_0013089 3300049573 Bacteria 6117
65 Ga0501037_0060049 3300049573 Bacteria 2773
66 Ga0501038_0001995 3300049574 Bacteria 18851
67 Ga0501038_0023463 3300049574 Bacteria 5515
68 Ga0501042_0089225 3300049578 Bacteria 2212
69 Ga0501043_0027945 3300049579 Bacteria 4428
70 Ga0501043_0061462 3300049579 Bacteria 2950
71 Ga0501046_0015690 3300049580 Bacteria 6360
72 Ga0501046_0039144 3300049580 Bacteria 3799
73 Ga0501047_0051391 3300049581 Bacteria 3982
74 Ga0501048_0014812 3300049582 Bacteria 5767
75 Ga0501048_0045691 3300049582 Bacteria 3128
76 Ga0501048_0070379 3300049582 Bacteria 2471
77 Ga0501070_0257133 3300049586 Bacteria 1428
78 Ga0501071_0496934 3300049587 Bacteria 936
79 Ga0501044_0080985 3300049823 Bacteria 3287
80 Ga0501044_0116986 3300049823 Bacteria 2670
81 Ga0501044_0330398 3300049823 Bacteria 1447
82 Ga0501044_0345016 3300049823 Bacteria 1409
83 Ga0501045_0396977 3300049824 Bacteria 1026
84 nmdc:mga06z11_14266_c1 3300050494 Bacteria 3516
85 Ga0466962_0019581 3300061719 Bacteria 3253
86 2585304058 2582581313 Bacteria 10042643
87 2585312046 2582581314 Bacteria 11452267
88 2616698986 2616644814 Bacteria 11555299
89 2616901273 2616644941 Bacteria 8510691
90 2643946109 2643221587 Bacteria 7586415
91 2644263820 2643221647 Bacteria 10741251
92 2644407867 2643221673 Bacteria 9196637
93 2644432898 2643221677 Bacteria 7584031
94 2785339801 2784746763 Bacteria 9783172
95 2785373142 2784746768 Bacteria 10036182
96 2786674896 2786546132 Bacteria 10419719
97 2808914981 2808606375 Bacteria 9466072
98 2811843240 2808606982 Bacteria 7791042
99 2862290933 2862290372 Bacteria 7471434
100 2862393015 2862382967 Bacteria 10317375
101 2862576240 2862574272 Bacteria 10567477
102 2863410219 2863404153 Bacteria 9672205
103 2867430676 2867428634 Bacteria 9590268
104 2875397885 2875391855 Bacteria 7600475
105 2877677759 2877676314 Bacteria 9512378
106 2912716047 2912715099 Bacteria 9460473
107 2919470928 2919468124 Bacteria 9133025
108 2954009685 2954002825 Bacteria 9173742
109 2954680506 2954673503 Bacteria 9685905
110 2954693341 2954691527 Bacteria 10720516
111 2954708434 2954701450 Bacteria 10834262
112 2954713047 2954711539 Bacteria 10867210
113 2954723006 2954721474 Bacteria 10456478
114 2954738823 2954731030 Bacteria 10243860
115 2954741916 2954740390 Bacteria 10229294
116 2954760893 2954759201 Bacteria 9358192
117 2990063421 2990059506 Bacteria 9321252
118 2997603368 2997600082 Bacteria 9896405
119 3006325568 3006321560 Bacteria 8247479
120 8008564214 8008558824 Bacteria 10610750
121 8048409660 8048406513 Bacteria 8936924
122 8056836065 8056829672 Bacteria 9045328
123 Ga0307510_10012458
124 rootH1_10009371
125 rootH2_10042804
126 JGI25160J50197_1017952
127 Ga0070679_100028993
128 Ga0070664_100321065
129 Ga0075368_10001869
130 Ga0075367_10000861
131 Ga0183367_1001
132 Ga0209758_1006018
133 Ga0207426_1007960
134 Ga0207426_1021809
135 Ga0207652_10330828
136 Ga0207687_10198040
137 Ga0207679_10223750
138 Ga0307511_10000150
139 Ga0307511_10020233
140 Ga0307512_10002523
141 Ga0307513_10098398
142 Ga0307509_10027972
143 Ga0307509_10042066
144 Ga0307509_10091524
145 Ga0307508_10003603
146 Ga0307508_10273273
147 Ga0307516_10020277
148 Ga0307518_10061836
149 Ga0307518_10107360
150 Ga0307518_10130144
151 Ga0307411_10138718
152 Ga0395898_0150472
153 Ga0451853_0790036
154 Ga0451853_3448186
155 Ga0439456_024664
156 Ga0450903_000431
157 Ga0466972_0000509
158 Ga0466972_0029107
159 Ga0466972_0036735
160 Ga0466965_0003123
161 Ga0466966_0004171
162 Ga0466961_0005123
163 Ga0466963_0046157
164 Ga0466963_0142086
165 Ga0466970_0000573
166 Ga0466957_0003255
167 Ga0466960_0004376
168 Ga0466959_0006628
169 Ga0466958_0006347
170 Ga0466967_0008209
171 Ga0466967_0009983
172 Ga0495603_0063502
173 Ga0495603_0149406
174 Ga0495629_0085141
175 Ga0495639_0053006
176 Ga0495662_0041627
177 Ga0495585_0019985
178 Ga0495594_0009887
179 Ga0495589_0010677
180 Ga0495636_0015165
181 Ga0495676_0013340
182 Ga0495687_002292
183 Ga0495687_014426
184 Ga0501032_0067981
185 Ga0501036_0141772
186 Ga0501037_0013089
187 Ga0501037_0060049
188 Ga0501038_0001995
189 Ga0501038_0023463
190 Ga0501042_0089225
191 Ga0501043_0027945
192 Ga0501043_0061462
193 Ga0501046_0015690
194 Ga0501046_0039144
195 Ga0501047_0051391
196 Ga0501048_0014812
197 Ga0501048_0045691
198 Ga0501048_0070379
199 Ga0501070_0257133
200 Ga0501071_0496934
201 Ga0501044_0080985
202 Ga0501044_0116986
203 Ga0501044_0330398
204 Ga0501044_0345016
205 Ga0501045_0396977
206 nmdc:mga06z11_14266_c1
207 Ga0466962_0019581
208 2585304058
209 2585312046
210 2616698986
211 2616901273
212 2643946109
213 2644263820
214 2644407867
215 2644432898
216 2785339801
217 2785373142
218 2786674896
219 2808914981
220 2811843240
221 2862290933
222 2862393015
223 2862576240
224 2863410219
225 2867430676
226 2875397885
227 2877677759
228 2912716047
229 2919470928
230 2954009685
231 2954680506
232 2954693341
233 2954708434
234 2954713047
235 2954723006
236 2954738823
237 2954741916
238 2954760893
239 2990063421
240 2997603368
241 3006325568
242 8008564214
243 8048409660
244 8056836065

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

231

310

0.97

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

218

259

0.95

PF01965

DJ-1_PfpI

DJ-1/PfpI family

2

170

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9397 209 308
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9262 208 312
3mgk-assembly1.cif.gz_A crystal structure of probable protease/amidase from clostridium acetobutylicum atcc 824 0.9167 3 189
3gra-assembly1.cif.gz_A crystal structure of arac family transcriptional regulator from pseudomonas putida 0.9072 4 186
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9049 210 306
ID Description Score Start End Superfamily
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9531 258 309 1.10.10.60
af_P77379_178_282_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9371 212 310 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9316 260 307 1.10.10.60
5suwA03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9309 257 309 1.10.10.60
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.93 262 306 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A318ABT8-F1-model_v4 deleted 0.96 206 306
AF-A0A6V8JZR6-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9534 213 308 GO:0003700
GO:0043565
AF-A0A3C1YXX7-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9532 215 308 GO:0003700
GO:0043565
AF-F7QUM8-F1-model_v4 Transcriptional regulator, AraC family 0.9525 223 308 GO:0003700
GO:0043565
AF-F1TEY5-F1-model_v4 Transcriptional regulator, AraC family 0.9381 203 308 GO:0003700
GO:0043565

Map