F110567

General Info

Members Datasets Scaffolds Average Seq Length
121 81 242 603

Family's Representative Sequence

Representative Sequence 3300028563|Ga0265319_1007149|Ga0265319_10071493
Length 708
Sequence MKPTLGLTGLTFNAMALIAPGAFLWLTYEEQCLYGAPMAGSSMWFGFLMALLLCFATAISYAELTKLYPGAGSSYFYAEQAFLSKEKTFKWARVVKFFIGWASHLYYWVYPGLMVGVTALLVGYLSGVIWPSTFSSTYNSPLEMIIVCIVFSLLVTYIAYRGVNGSTGVNIAMNIIQIVALLVFSFMAVGYRMSHKEGAQAIHLSNGTAINYQVAQTNVTTTDDKGVVTPTPDAWADGSAKYQSSANVTADLLDPAKNKDADQLGAIKDMKLAVGDVLPDFQKDKDGKLQPVLAIKQTDRQVADDDLDAAKNKDADVLATLKGMGLSSGDPYPLFQTDKDGKNVKGTDGKLIPVPFTVSYTAKDGGISGTEGSAKDPQMFNYHETAGAVVAPHGFSNIIVQACIAILCLVGFESVSSMGEEAKNPKKDIPKAILLSLAIQGAFCYLIEYFCANYFLNSGYTMVSAGASSAPIGDMMKIVGMSAFGSANAGVAFMEVQAFTVFLALIGTTLACLNTGARVTYAMGRDEELGAHFGLLHEKTLSPHKAIWALGILSIFIGIVTVAIWDGGQSADLAPLDKHNFWYSFGIFSPHAYTWLPNTVLIVTLISNFGTFLLYMTTCVVAIVAFRQHHTFHGFKHVVVPVFGVLANFICMLFYLIGPLPVNGSSLVAGMSWHEPYIALAVVLVYFAMKSKAKNREIFLTQKPATST

Samples

Sample ID Description Type Environment
1 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
4 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
36 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
49 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
52 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
53 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
62 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
68 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
69 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
70 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
71 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
76 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
77 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
78 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
79 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
80 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
81 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.83
Rhizosphere 95.87
Stem 0
Stem Tuber 0
Unclassified 8.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265319_1007149 3300028563 Bacteria 5060
2 Ga0070666_10001030 3300005335 Bacteria 17060
3 Ga0070667_100012468 3300005367 Bacteria 7033
4 Ga0070709_10058352 3300005434 Bacteria 2447
5 Ga0070713_100025288 3300005436 Bacteria 4639
6 Ga0070713_100041828 3300005436 Bacteria 3736
7 Ga0070706_100106966 3300005467 Unclassified 2602
8 Ga0070707_100015664 3300005468 Bacteria 7118
9 Ga0070698_100012058 3300005471 Bacteria 9166
10 Ga0070698_100099567 3300005471 Bacteria 2880
11 Ga0070699_100086844 3300005518 Bacteria 2730
12 Ga0070699_100122322 3300005518 Bacteria 2289
13 Ga0070697_100040966 3300005536 Bacteria 3747
14 Ga0068855_100050853 3300005563 Bacteria 4882
15 Ga0068856_100003443 3300005614 Bacteria 16004
16 Ga0068864_100026206 3300005618 Bacteria 4915
17 Ga0068863_100047871 3300005841 Bacteria 4055
18 Ga0068858_100009142 3300005842 Bacteria 9475
19 Ga0068860_100088401 3300005843 Unclassified 2949
20 Ga0070717_10044876 3300006028 Unclassified 3612
21 Ga0068871_100038837 3300006358 Bacteria 3805
22 Ga0075428_100037424 3300006844 Bacteria 5342
23 Ga0075431_100063307 3300006847 Bacteria 3817
24 Ga0075434_100044853 3300006871 Bacteria 4386
25 Ga0075434_100056189 3300006871 Unclassified 3912
26 Ga0068865_100023077 3300006881 Bacteria 4069
27 Ga0099794_10001194 3300007265 Bacteria 8933
28 Ga0105245_10008178 3300009098 Bacteria 9152
29 Ga0105247_10011307 3300009101 Bacteria 5384
30 Ga0114129_10000799 3300009147 Bacteria 40350
31 Ga0114129_10155331 3300009147 Unclassified 3129
32 Ga0105237_10062647 3300009545 Bacteria 3719
33 Ga0105238_10001913 3300009551 Bacteria 20909
34 Ga0105239_10074989 3300010375 Bacteria 3719
35 Ga0157370_10118539 3300013104 Bacteria 2472
36 Ga0157374_10040376 3300013296 Bacteria 4297
37 Ga0157378_10000133 3300013297 Bacteria 70888
38 Ga0163162_10075862 3300013306 Bacteria 3423
39 Ga0157372_10002337 3300013307 Bacteria 20534
40 Ga0157372_10047912 3300013307 Bacteria 4749
41 Ga0157376_10035916 3300014969 Bacteria 4011
42 Ga0213872_10002599 3300021361 Bacteria 10505
43 Ga0213876_10003736 3300021384 Bacteria 8630
44 Ga0207710_10029993 3300025900 Unclassified 2370
45 Ga0207684_10043830 3300025910 Bacteria 3794
46 Ga0207671_10115616 3300025914 Bacteria 2045
47 Ga0207646_10014966 3300025922 Bacteria 7345
48 Ga0207646_10022805 3300025922 Bacteria 5757
49 Ga0207694_10002504 3300025924 Bacteria 14927
50 Ga0207700_10031451 3300025928 Bacteria 3771
51 Ga0207658_10023180 3300025986 Unclassified 4330
52 Ga0207703_10005574 3300026035 Bacteria 10103
53 Ga0207641_10008617 3300026088 Bacteria 8417
54 Ga0268264_10012897 3300028381 Bacteria 6870
55 Ga0265319_1000275 3300028563 Bacteria 38458
56 Ga0265319_1003018 3300028563 Bacteria 8935
57 Ga0265319_1003815 3300028563 Bacteria 7720
58 Ga0265319_1018703 3300028563 Bacteria 2603
59 Ga0265334_10002459 3300028573 Bacteria 8696
60 Ga0265334_10004317 3300028573 Bacteria 6325
61 Ga0265318_10000124 3300028577 Bacteria 71647
62 Ga0265318_10004796 3300028577 Bacteria 6477
63 Ga0265338_10010430 3300028800 Bacteria 10896
64 Ga0265338_10012375 3300028800 Bacteria 9727
65 Ga0265338_10015888 3300028800 Bacteria 8238
66 Ga0265338_10029906 3300028800 Bacteria 5386
67 Ga0265338_10096685 3300028800 Bacteria 2422
68 Ga0265320_10000176 3300031240 Bacteria 54264
69 Ga0265320_10001210 3300031240 Bacteria 18956
70 Ga0265320_10004452 3300031240 Bacteria 9180
71 Ga0265320_10017466 3300031240 Bacteria 3982
72 Ga0265325_10000513 3300031241 Bacteria 28019
73 Ga0265340_10000471 3300031247 Bacteria 21853
74 Ga0265339_10003842 3300031249 Bacteria 10425
75 Ga0265339_10008200 3300031249 Bacteria 6667
76 Ga0265331_10019586 3300031250 Unclassified 3492
77 Ga0265327_10000127 3300031251 Bacteria 166247
78 Ga0265327_10001315 3300031251 Bacteria 32361
79 Ga0265327_10011516 3300031251 Bacteria 6077
80 Ga0265316_10000051 3300031344 Bacteria 126739
81 Ga0265316_10001034 3300031344 Bacteria 30172
82 Ga0265316_10002548 3300031344 Bacteria 18832
83 Ga0265313_10000418 3300031595 Bacteria 45584
84 Ga0265313_10001567 3300031595 Bacteria 21213
85 Ga0265314_10000001 3300031711 Bacteria 3792860
86 Ga0265314_10008979 3300031711 Bacteria 8506
87 Ga0265314_10010011 3300031711 Bacteria 7950
88 Ga0265314_10014279 3300031711 Bacteria 6366
89 Ga0265314_10017780 3300031711 Bacteria 5571
90 Ga0265314_10020490 3300031711 Bacteria 5104
91 Ga0265342_10000719 3300031712 Bacteria 34244
92 Ga0373956_0006550 3300035119 Bacteria 4666
93 Ga0373927_0006346 3300035695 Bacteria 8056
94 Ga0373937_0005031 3300036401 Bacteria 11252
95 Ga0373937_0016599 3300036401 Bacteria 6541
96 Ga0373937_0032937 3300036401 Bacteria 4702
97 Ga0373937_0089519 3300036401 Bacteria 2850
98 Ga0373925_0017475 3300037068 Bacteria 5199
99 Ga0436364_0125947 3300037853 Bacteria 2269
100 Ga0436365_0104008 3300039437 Bacteria 5479
101 Ga0436365_1120348 3300039437 Bacteria 27692
102 Ga0436360_0171192 3300039438 Bacteria 7531
103 Ga0436360_0847349 3300039438 Bacteria 5018
104 Ga0436360_1156389 3300039438 Bacteria 3213
105 Ga0436361_0313623 3300039447 Bacteria 8180
106 Ga0436361_0449577 3300039447 Bacteria 2981
107 Ga0436361_1043563 3300039447 Bacteria 4335
108 Ga0436362_0513148 3300039453 Bacteria 2534
109 Ga0453683_0001188 3300044673 Bacteria 23498
110 Ga0451576_0056000 3300045051 Unclassified 4125
111 Ga0495580_0012789 3300046472 Bacteria 6433
112 Ga0495618_0022159 3300046514 Unclassified 3922
113 Ga0495674_0050021 3300047319 Bacteria 3689
114 Ga0496115_0004935 3300048918 Bacteria 9690
115 nmdc:mga05p37_1193_c1 3300050507 Bacteria 30026
116 nmdc:mga05p37_252649_c1 3300050507 Bacteria 2114
117 nmdc:mga09592_67660_c1 3300050508 Bacteria 3030
118 nmdc:mga06r32_46063_c1 3300050510 Bacteria 4160
119 nmdc:mga0n895_61024_c1 3300050512 Bacteria 3721
120 nmdc:mga0a205_67985_c1 3300050515 Bacteria 3441
121 Ga0495601_0053383 3300053077 Bacteria 2555
122 Ga0265319_1007149
123 Ga0070666_10001030
124 Ga0070667_100012468
125 Ga0070709_10058352
126 Ga0070713_100025288
127 Ga0070713_100041828
128 Ga0070706_100106966
129 Ga0070707_100015664
130 Ga0070698_100012058
131 Ga0070698_100099567
132 Ga0070699_100086844
133 Ga0070699_100122322
134 Ga0070697_100040966
135 Ga0068855_100050853
136 Ga0068856_100003443
137 Ga0068864_100026206
138 Ga0068863_100047871
139 Ga0068858_100009142
140 Ga0068860_100088401
141 Ga0070717_10044876
142 Ga0068871_100038837
143 Ga0075428_100037424
144 Ga0075431_100063307
145 Ga0075434_100044853
146 Ga0075434_100056189
147 Ga0068865_100023077
148 Ga0099794_10001194
149 Ga0105245_10008178
150 Ga0105247_10011307
151 Ga0114129_10000799
152 Ga0114129_10155331
153 Ga0105237_10062647
154 Ga0105238_10001913
155 Ga0105239_10074989
156 Ga0157370_10118539
157 Ga0157374_10040376
158 Ga0157378_10000133
159 Ga0163162_10075862
160 Ga0157372_10002337
161 Ga0157372_10047912
162 Ga0157376_10035916
163 Ga0213872_10002599
164 Ga0213876_10003736
165 Ga0207710_10029993
166 Ga0207684_10043830
167 Ga0207671_10115616
168 Ga0207646_10014966
169 Ga0207646_10022805
170 Ga0207694_10002504
171 Ga0207700_10031451
172 Ga0207658_10023180
173 Ga0207703_10005574
174 Ga0207641_10008617
175 Ga0268264_10012897
176 Ga0265319_1000275
177 Ga0265319_1003018
178 Ga0265319_1003815
179 Ga0265319_1018703
180 Ga0265334_10002459
181 Ga0265334_10004317
182 Ga0265318_10000124
183 Ga0265318_10004796
184 Ga0265338_10010430
185 Ga0265338_10012375
186 Ga0265338_10015888
187 Ga0265338_10029906
188 Ga0265338_10096685
189 Ga0265320_10000176
190 Ga0265320_10001210
191 Ga0265320_10004452
192 Ga0265320_10017466
193 Ga0265325_10000513
194 Ga0265340_10000471
195 Ga0265339_10003842
196 Ga0265339_10008200
197 Ga0265331_10019586
198 Ga0265327_10000127
199 Ga0265327_10001315
200 Ga0265327_10011516
201 Ga0265316_10000051
202 Ga0265316_10001034
203 Ga0265316_10002548
204 Ga0265313_10000418
205 Ga0265313_10001567
206 Ga0265314_10000001
207 Ga0265314_10008979
208 Ga0265314_10010011
209 Ga0265314_10014279
210 Ga0265314_10017780
211 Ga0265314_10020490
212 Ga0265342_10000719
213 Ga0373956_0006550
214 Ga0373927_0006346
215 Ga0373937_0005031
216 Ga0373937_0016599
217 Ga0373937_0032937
218 Ga0373937_0089519
219 Ga0373925_0017475
220 Ga0436364_0125947
221 Ga0436365_0104008
222 Ga0436365_1120348
223 Ga0436360_0171192
224 Ga0436360_0847349
225 Ga0436360_1156389
226 Ga0436361_0313623
227 Ga0436361_0449577
228 Ga0436361_1043563
229 Ga0436362_0513148
230 Ga0453683_0001188
231 Ga0451576_0056000
232 Ga0495580_0012789
233 Ga0495618_0022159
234 Ga0495674_0050021
235 Ga0496115_0004935
236 nmdc:mga05p37_1193_c1
237 nmdc:mga05p37_252649_c1
238 nmdc:mga09592_67660_c1
239 nmdc:mga06r32_46063_c1
240 nmdc:mga0n895_61024_c1
241 nmdc:mga0a205_67985_c1
242 Ga0495601_0053383

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13520

AA_permease_2

Amino acid permease

354

687

0.77

PF00324

AA_permease

Amino acid permease

361

697

0.73

PF13520

AA_permease_2

Amino acid permease

4

235

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.823 13 580
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.8183 13 580
8b71-assembly1.cif.gz_B upright kima dimer with bound c-di-amp from b. subtilis 0.7783 17 587
7nf6-assembly1.cif.gz_B ovine b0,+at-rbat heterodimer 0.7706 22 579
3gi9-assembly1.cif.gz_C crystal structure of apct transporter bound to 7f11 monoclonal fab fragment 0.7643 15 601
ID Description Score Start End Superfamily
af_P0AA47_14_445_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7973 13 588 1.20.1740.10
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7944 13 587 1.20.1740.10
af_P0AA47_14_445_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7837 13 588 1.20.1740.10
af_Q9Y1A7_38_480_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.78 11 580 1.20.1740.10
af_P71892_30_474_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7791 13 588 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A2V9KVF6-F1-model_v4 Amino acid permease/ SLC12A domain-containing protein 0.8619 1 483 GO:0016020
GO:0055085
AF-A0A2V9KVF6-F1-model_v4 Amino acid permease/ SLC12A domain-containing protein 0.8487 1 483 GO:0016020
GO:0055085
AF-A0A1H1E051-F1-model_v4 Amino acid permease (Amino acid transporter) 0.843 13 581 GO:0005886
GO:0022857
AF-A0A3M1L6L3-F1-model_v4 Amino acid permease 0.835 4 520 GO:0016020
GO:0022857
AF-A0A2W5XJD9-F1-model_v4 Amino acid permease 0.8168 11 587 GO:0015171
GO:0016020

Map