F109688

General Info

Members Datasets Scaffolds Average Seq Length
121 106 101 409

Family's Representative Sequence

Representative Sequence 3300006195|Ga0075366_10000520|Ga0075366_1000052012
Length 461
Sequence VGQNGENKAQGTTNASRPASTQGKRPRILLIHQNFPGQFRHLALHLRAREDIEVIGLGRHTAPGLKITQADGSQVDFPWFKYKLHRQVKTETHPYLRQMEGAVLHGQAVARALTQLKQKGFTPDIILAHPGWGETLYAKQIFPNVKLIHFCEWYYSTRGADFNFDPEFPSTLDDHLRITTWNALHLLNLENCDAAVAPTHWQKSRFPVAYQHKIQVIHEGIDTDNLGPDPEATLVVPSPKHGRGWPAGSGEGNTQEATLTLKAGDPIITYVARNLEPYRGFHTFMRALPKVLKQHPSAQVLIVGGDSRSYGAMPKDAKHWREKMLKETREALGDHEQRIHFLGKVPYETYKKVLQVSAAHVYLTYPFVLSWSLLEAMATGCRIIASDTAPVREVIRHGENGTLTDFFDAGRLARHIVDALNDHPLCWALSKRASADAEAYSIGDGLTAYLQLLGKKSWSFK

Samples

Sample ID Description Type Environment
1 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
2 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
3 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
4 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
5 2713897149 Pseudomonas fluorescens SF4c Isolate Rhizosphere
6 2738543020 Pseudomonas sp. GV054 Isolate Unclassified
7 2738543021 Pseudomonas sp. GV071 Isolate Unclassified
8 2808606379 Pseudomonas sp. SJZ079 Isolate Rhizosphere
9 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
10 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
11 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
12 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
13 2919063839 Pseudomonas pharyngis 1098 Isolate Rhizosphere
14 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
15 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
16 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
17 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
18 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
19 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
20 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
23 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
28 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
37 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
38 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
39 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
40 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
41 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
57 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
58 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
59 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
60 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
61 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
62 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
63 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
64 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
65 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
66 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
67 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
68 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
69 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
70 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
73 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
74 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
75 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
76 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
77 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
78 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
79 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
80 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
81 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
82 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
83 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
84 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
88 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
89 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
90 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
91 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
94 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
95 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
98 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
103 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
104 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
105 641522639 Methylobacterium sp. 4-46 Isolate Nodule
106 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.47
Metatranscriptomes 0
Isolates 16.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.09
Nodule 3.31
Rhizoplane 0.83
Rhizosphere 67.77
Stem 0
Stem Tuber 0
Unclassified 19.01

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10000110 3300002067 Bacteria 29560
2 JGI24738J21930_10000149 3300002075 Bacteria 17345
3 rootL2_10187418 3300003322 Bacteria 2304
4 rootH1_10025058 3300003323 Bacteria 2697
5 rootH1_10231171 3300003323 Bacteria 1890
6 Ga0055525_1000027 3300003759 Bacteria 340506
7 Ga0055531_10002274 3300003794 Bacteria 12995
8 Ga0070669_100009375 3300005353 Bacteria 6972
9 Ga0068855_100000739 3300005563 Bacteria 40147
10 Ga0068855_100144352 3300005563 Bacteria 2711
11 Ga0075366_10000520 3300006195 Bacteria 17808
12 Ga0105244_10001903 3300009036 Bacteria 16215
13 Ga0105250_10002341 3300009092 Bacteria 9583
14 Ga0105250_10029562 3300009092 Bacteria 2204
15 Ga0105240_10011650 3300009093 Bacteria 12224
16 Ga0105243_10000218 3300009148 Bacteria 67019
17 Ga0105243_10031750 3300009148 Bacteria 4074
18 Ga0105238_10032848 3300009551 Bacteria 5282
19 Ga0105238_10160294 3300009551 Unclassified 2225
20 Ga0105239_10000984 3300010375 Bacteria 39982
21 Ga0157373_10005320 3300013100 Bacteria 9669
22 Ga0157370_10021757 3300013104 Bacteria 6388
23 Ga0157369_10088338 3300013105 Bacteria 3308
24 Ga0182008_10007744 3300014497 Bacteria 5913
25 Ga0182008_10047331 3300014497 Bacteria 2137
26 Ga0182008_10052862 3300014497 Bacteria 2012
27 Ga0182006_1040122 3300015261 Bacteria 1844
28 Ga0182007_10011673 3300015262 Bacteria 3413
29 Ga0182005_1014981 3300015265 Bacteria 2165
30 Ga0213875_10023388 3300021388 Bacteria 2951
31 Ga0209563_100023 3300025230 Bacteria 636844
32 Ga0209675_1006058 3300025291 Bacteria 4937
33 Ga0209050_1010873 3300025298 Bacteria 4413
34 Ga0209051_1005214 3300025303 Bacteria 7675
35 Ga0209257_1000033 3300025304 Bacteria 671006
36 Ga0207696_1000703 3300025711 Bacteria 22889
37 Ga0207655_1000193 3300025728 Bacteria 107789
38 Ga0207713_1009307 3300025735 Bacteria 5552
39 Ga0207695_10009436 3300025913 Bacteria 12069
40 Ga0207681_10008204 3300025923 Bacteria 6389
41 Ga0207694_10034264 3300025924 Bacteria 3893
42 Ga0207694_10054580 3300025924 Unclassified 3100
43 Ga0207709_10000036 3300025935 Bacteria 292568
44 Ga0207667_10000397 3300025949 Bacteria 58824
45 Ga0395899_0009916 3300037312 Bacteria 7304
46 Ga0395900_0000135 3300037418 Bacteria 124245
47 Ga0395898_0002875 3300037466 Bacteria 19655
48 Ga0395905_0022649 3300037471 Bacteria 5939
49 Ga0436364_0065780 3300037853 Bacteria 3969
50 Ga0436364_0221273 3300037853 Bacteria 2790
51 Ga0436364_1382451 3300037853 Bacteria 4758
52 Ga0436364_1395528 3300037853 Bacteria 51230
53 Ga0436365_0843558 3300039437 Bacteria 3177
54 Ga0436361_1159877 3300039447 Bacteria 3215
55 Ga0439447_000590 3300041407 Bacteria 13561
56 Ga0439466_0008855 3300041411 Bacteria 3786
57 Ga0450904_000203 3300042139 Bacteria 12935
58 Ga0450905_000108 3300042142 Bacteria 8187
59 Ga0466982_0000019 3300044672 Bacteria 111595
60 Ga0466961_0000393 3300044693 Bacteria 28059
61 Ga0495653_0040587 3300046463 Bacteria 3636
62 Ga0495606_0000027 3300046507 Bacteria 253573
63 Ga0495631_0088444 3300046518 Bacteria 1334
64 Ga0495643_0000638 3300046522 Bacteria 41518
65 Ga0495666_0002685 3300046526 Bacteria 8875
66 Ga0495642_0001182 3300046528 Bacteria 11987
67 Ga0495587_0012914 3300046536 Bacteria 5250
68 Ga0495598_0039045 3300046537 Bacteria 1378
69 Ga0495609_0000261 3300046538 Bacteria 49520
70 Ga0495609_0003662 3300046538 Bacteria 8712
71 Ga0495622_0002034 3300046557 Bacteria 9887
72 Ga0495611_0064886 3300046648 Unclassified 1663
73 Ga0495659_0001205 3300046664 Bacteria 8975
74 Ga0495623_0010091 3300046679 Bacteria 6112
75 Ga0495646_0012005 3300046680 Bacteria 5510
76 Ga0495671_0003946 3300046692 Bacteria 8996
77 Ga0495649_0000481 3300046694 Bacteria 34317
78 Ga0495649_0009906 3300046694 Bacteria 5636
79 Ga0495589_0003476 3300046794 Bacteria 8523
80 Ga0495660_0121851 3300046810 Unclassified 1318
81 Ga0495604_0012402 3300047317 Bacteria 6776
82 Ga0495674_0004587 3300047319 Bacteria 13287
83 Ga0495672_0003224 3300047320 Bacteria 14189
84 Ga0495680_0061502 3300047322 Bacteria 2888
85 Ga0495683_0033052 3300047323 Bacteria 2634
86 Ga0495681_0014945 3300047470 Bacteria 4422
87 Ga0495593_0047266 3300047673 Bacteria 2289
88 Ga0496110_0144153 3300048913 Bacteria 2154
89 Ga0496117_0009724 3300048920 Bacteria 8882
90 Ga0496118_0010524 3300048921 Bacteria 9150
91 Ga0496119_0060779 3300048922 Unclassified 2260
92 Ga0496121_0040624 3300048924 Bacteria 4078
93 Ga0496121_0045461 3300048924 Bacteria 3772
94 Ga0496124_0000386 3300048927 Bacteria 80557
95 Ga0495678_008712 3300049459 Bacteria 5090
96 Ga0501037_0021939 3300049573 Bacteria 4727
97 Ga0501071_0111956 3300049587 Bacteria 2018
98 Ga0501035_0249217 3300049822 Bacteria 1509
99 nmdc:mga0k408_1121_c1 3300050493 Bacteria 14664
100 Ga0500568_0008145 3300053139 Bacteria 5080
101 Ga0500588_0006218 3300053146 Bacteria 2692

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046664 Ga0495659_0001205 Ga0495659_0001205_12_1049 340
2 3300047323 Ga0495683_0033052 Ga0495683_0033052_1558_2595 340
3 3300047673 Ga0495593_0047266 Ga0495593_0047266_347_1426 359
4 3300025728 Ga0207655_1000193 Ga0207655_100019365 372
5 3300025935 Ga0207709_10000036 Ga0207709_10000036154 372
6 3300037312 Ga0395899_0009916 Ga0395899_0009916_4879_6018 373
7 3300044693 Ga0466961_0000393 Ga0466961_0000393_21763_22926 381
8 3300003759 Ga0055525_1000027 Ga0055525_100002787 382
9 3300025230 Ga0209563_100023 Ga0209563_100023250 382
10 3300046538 Ga0495609_0003662 Ga0495609_0003662_699_1865 383
11 iso_pu_bacteria 2547132103 2547371598 392
12 iso_pu_bacteria 2843690924 2843693646 392
13 iso_pu_bacteria 2919063839 2919064347 393
14 3300046537 Ga0495598_0039045 Ga0495598_0039045_86_1312 394
15 iso_pu_bacteria 2523533628 2524001494 394
16 3300003323 rootH1_10025058 rootH1_100250582 397
17 3300005353 Ga0070669_100009375 Ga0070669_1000093753 397
18 3300009036 Ga0105244_10001903 Ga0105244_100019032 397
19 3300009092 Ga0105250_10002341 Ga0105250_100023412 397
20 3300009148 Ga0105243_10000218 Ga0105243_1000021841 397
21 3300014497 Ga0182008_10047331 Ga0182008_100473312 397
22 3300014497 Ga0182008_10052862 Ga0182008_100528622 397
23 3300025711 Ga0207696_1000703 Ga0207696_100070314 397
24 3300025923 Ga0207681_10008204 Ga0207681_100082048 397
25 3300042142 Ga0450905_000108 Ga0450905_000108_302_1501 397
26 3300048920 Ga0496117_0009724 Ga0496117_0009724_7083_8282 397
27 3300048921 Ga0496118_0010524 Ga0496118_0010524_943_2142 397
28 3300048924 Ga0496121_0045461 Ga0496121_0045461_1984_3183 397
29 3300046538 Ga0495609_0000261 Ga0495609_0000261_22642_23838 398
30 iso_pu_bacteria 2919679072 2919679223 398
31 3300013104 Ga0157370_10021757 Ga0157370_100217573 399
32 3300025735 Ga0207713_1009307 Ga0207713_10093072 399
33 3300046507 Ga0495606_0000027 Ga0495606_0000027_127159_128373 399
34 3300046694 Ga0495649_0000481 Ga0495649_0000481_6716_7930 399
35 3300046810 Ga0495660_0121851 Ga0495660_0121851_84_1295 399
36 iso_pu_bacteria 2990196909 2990199640 399
37 3300014497 Ga0182008_10007744 Ga0182008_100077443 400
38 3300015261 Ga0182006_1040122 Ga0182006_10401222 400
39 3300041407 Ga0439447_000590 Ga0439447_000590_10859_12070 400
40 3300041411 Ga0439466_0008855 Ga0439466_0008855_1083_2294 400
41 iso_pu_bacteria 2738543020 2739284948 400
42 iso_pu_bacteria 2738543021 2739290262 400
43 iso_pu_bacteria 2846037992 2846040898 400
44 iso_pu_bacteria 2886848708 2886851373 400
45 3300013100 Ga0157373_10005320 Ga0157373_100053205 401
46 3300015265 Ga0182005_1014981 Ga0182005_10149812 401
47 3300046463 Ga0495653_0040587 Ga0495653_0040587_763_1977 401
48 3300046518 Ga0495631_0088444 Ga0495631_0088444_15_1235 401
49 3300046526 Ga0495666_0002685 Ga0495666_0002685_6895_8109 401
50 3300046528 Ga0495642_0001182 Ga0495642_0001182_7938_9158 401
51 3300046536 Ga0495587_0012914 Ga0495587_0012914_3502_4716 401
52 3300046557 Ga0495622_0002034 Ga0495622_0002034_1702_2922 401
53 3300046648 Ga0495611_0064886 Ga0495611_0064886_229_1449 401
54 3300046679 Ga0495623_0010091 Ga0495623_0010091_3118_4332 401
55 3300046680 Ga0495646_0012005 Ga0495646_0012005_3502_4716 401
56 3300046794 Ga0495589_0003476 Ga0495589_0003476_6803_8023 401
57 3300047317 Ga0495604_0012402 Ga0495604_0012402_649_1863 401
58 3300047319 Ga0495674_0004587 Ga0495674_0004587_10308_11522 401
59 3300047322 Ga0495680_0061502 Ga0495680_0061502_241_1455 401
60 3300048913 Ga0496110_0144153 Ga0496110_0144153_148_1365 401
61 3300048924 Ga0496121_0040624 Ga0496121_0040624_2531_3745 401
62 3300048927 Ga0496124_0000386 Ga0496124_0000386_53363_54586 401
63 3300049459 Ga0495678_008712 Ga0495678_008712_313_1533 401
64 iso_pu_bacteria 2990710928 2990714213 401
65 3300042139 Ga0450904_000203 Ga0450904_000203_5853_7079 402
66 3300046692 Ga0495671_0003946 Ga0495671_0003946_1633_2856 402
67 3300046694 Ga0495649_0009906 Ga0495649_0009906_1051_2274 402
68 3300047470 Ga0495681_0014945 Ga0495681_0014945_2982_4205 402
69 3300009148 Ga0105243_10031750 Ga0105243_100317501 403
70 3300049573 Ga0501037_0021939 Ga0501037_0021939_2541_3770 403
71 iso_pu_bacteria 2713897149 2715759735 403
72 3300009092 Ga0105250_10029562 Ga0105250_100295622 404
73 3300046522 Ga0495643_0000638 Ga0495643_0000638_14777_16006 404
74 3300047320 Ga0495672_0003224 Ga0495672_0003224_929_2158 404
75 3300021388 Ga0213875_10023388 Ga0213875_100233882 405
76 3300025291 Ga0209675_1006058 Ga0209675_10060584 405
77 3300037853 Ga0436364_0065780 Ga0436364_0065780_154_1374 405
78 3300037853 Ga0436364_0221273 Ga0436364_0221273_722_1942 405
79 3300037853 Ga0436364_1382451 Ga0436364_1382451_457_1794 405
80 3300039437 Ga0436365_0843558 Ga0436365_0843558_417_1637 405
81 iso_pu_bacteria 3003665799 3003670039 405
82 3300053139 Ga0500568_0008145 Ga0500568_0008145_2119_3393 407
83 3300053146 Ga0500588_0006218 Ga0500588_0006218_1389_2615 407
84 iso_pu_bacteria 3003665799 3003672904 407
85 3300005563 Ga0068855_100144352 Ga0068855_1001443521 408
86 iso_pu_bacteria 2545555834 2545672599 408
87 iso_pu_bacteria 2808606379 2808939116 408
88 iso_pu_bacteria 641522639 641643986 408
89 3300025303 Ga0209051_1005214 Ga0209051_10052143 410
90 3300025304 Ga0209257_1000033 Ga0209257_10000332 410
91 3300037853 Ga0436364_1395528 Ga0436364_1395528_9548_10810 410
92 3300003322 rootL2_10187418 rootL2_101874182 411
93 3300003323 rootH1_10231171 rootH1_102311713 411
94 3300037418 Ga0395900_0000135 Ga0395900_0000135_16367_17623 411
95 3300037471 Ga0395905_0022649 Ga0395905_0022649_850_2106 411
96 3300044672 Ga0466982_0000019 Ga0466982_0000019_80986_82239 411
97 iso_pu_bacteria 2671180139 2671692805 412
98 iso_pu_bacteria 2842333319 2842338477 412
99 iso_pu_bacteria 643348564 643599692 412
100 3300009551 Ga0105238_10032848 Ga0105238_100328484 413
101 3300015262 Ga0182007_10011673 Ga0182007_100116733 413
102 3300025924 Ga0207694_10034264 Ga0207694_100342642 413
103 3300049587 Ga0501071_0111956 Ga0501071_0111956_129_1379 413
104 3300049822 Ga0501035_0249217 Ga0501035_0249217_27_1277 413
105 3300002075 JGI24738J21930_10000149 JGI24738J21930_100001494 416
106 3300006195 Ga0075366_10000520 Ga0075366_1000052012 416
107 3300048922 Ga0496119_0060779 Ga0496119_0060779_47_1315 416
108 3300050493 nmdc:mga0k408_1121_c1 nmdc:mga0k408_1121_c1_562_1947 416
109 3300009551 Ga0105238_10160294 Ga0105238_101602942 417
110 3300025924 Ga0207694_10054580 Ga0207694_100545801 417
111 3300037466 Ga0395898_0002875 Ga0395898_0002875_2852_4159 417
112 3300039447 Ga0436361_1159877 Ga0436361_1159877_543_1904 419
113 3300003794 Ga0055531_10002274 Ga0055531_100022743 425
114 3300025298 Ga0209050_1010873 Ga0209050_10108732 425
115 3300002067 JGI24735J21928_10000110 JGI24735J21928_1000011017 434
116 3300005563 Ga0068855_100000739 Ga0068855_1000007397 434
117 3300009093 Ga0105240_10011650 Ga0105240_100116504 434
118 3300010375 Ga0105239_10000984 Ga0105239_1000098425 434
119 3300013105 Ga0157369_10088338 Ga0157369_100883382 434
120 3300025913 Ga0207695_10009436 Ga0207695_100094364 434
121 3300025949 Ga0207667_10000397 Ga0207667_1000039725 434

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12000

Glyco_trans_4_3

Glycosyl transferase family 4 group

65

226

0.97

PF00534

Glycos_transf_1

Glycosyl transferases group 1

253

436

0.9

PF13692

Glyco_trans_1_4

Glycosyl transferases group 1

265

422

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5i45-assembly1.cif.gz_A 1.35 angstrom crystal structure of c-terminal domain of glycosyl transferase group 1 family protein (lpcc) from francisella tularensis. 0.844 203 407
5i45-assembly1.cif.gz_A 1.35 angstrom crystal structure of c-terminal domain of glycosyl transferase group 1 family protein (lpcc) from francisella tularensis. 0.8402 203 407
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8243 230 402
3qhp-assembly1.cif.gz_A crystal structure of the catalytic domain of cholesterol-alpha-glucosyltransferase from helicobacter pylori 0.8054 230 402
3mbo-assembly1.cif.gz_A crystal structure of the glycosyltransferase babsha bound with udp and l-malate 0.8005 17 425
ID Description Score Start End Superfamily
5d00A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9029 230 398 3.40.50.2000
af_P96407_190_356_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8853 230 400 3.40.50.2000
af_Q9SSP6_536_651_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8793 324 404 3.40.50.2000
af_F4IBV4_205_380_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8768 230 404 3.40.50.2000
af_Q2G0L3_321_481_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.8729 235 402 3.40.50.2000
ID Description Score Start End GO Terms
AF-C4XMP6-F1-model_v4 Putative glycosyltransferase 0.9669 17 433 GO:0016757
AF-A0A326QMJ4-F1-model_v4 Glycosyl transferase family 1 0.9666 18 423 GO:0009103
GO:0016757
GO:0045226
AF-A0A326QMJ4-F1-model_v4 Glycosyl transferase family 1 0.9573 18 423 GO:0009103
GO:0016757
GO:0045226
AF-C4XMP6-F1-model_v4 Putative glycosyltransferase 0.9555 17 433 GO:0016757
AF-A0A846SQZ0-F1-model_v4 Glycosyl transferase family 4 domain-containing protein 0.9439 18 257

Feature Viewer

pLDDT pTM Quality
90.41 0.88 High
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Predicted Structure (AlphaFold2)

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