F106114
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 120 | 97 | 56 | 140 |
Family's Representative Sequence
| Representative Sequence | 3300025294|Ga0209025_1157105|Ga0209025_11571051 |
| Length | 167 |
| Sequence | MGFIIDIKQFIIDNHTSISDFKVGGTRMTIQNINHLLFSVSNLEKSIAFYEKIFDAKLLVKGRSTAYFDVNGLWLALNVEEDIPRNEIHQSYTHVAFSIHEDNFDKMYEKLIQHNVNILEGRQRDVRDKKSIYFTDPDGHKFEFHTGTLRDRLNYYKKEKTHMEFFD |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2540341094 | Bacillus subtilis XF-1 | Isolate | Rhizosphere |
| 2 | 2571042143 | Paenibacillus graminis RSA19 | Isolate | Unclassified |
| 3 | 2585428059 | Paenibacillus chondroitinus OK414 | Isolate | Rhizosphere |
| 4 | 2593339131 | Bacillus sp. UNCCL81 | Isolate | Unclassified |
| 5 | 2643221676 | Paenibacillus sp. Root444D2 | Isolate | Unclassified |
| 6 | 2643221729 | Bacillus sp. Root11 | Isolate | Unclassified |
| 7 | 2643221730 | Bacillus sp. Root131 | Isolate | Unclassified |
| 8 | 2684623153 | Bacillus pumilus SH-B9 | Isolate | Unclassified |
| 9 | 2703719227 | Bacillus mycoides GOE6 | Isolate | Rhizosphere |
| 10 | 2738543017 | Bacillus sp. OV186 | Isolate | Unclassified |
| 11 | 2757320391 | Bacillus sp. NFR08 | Isolate | Rhizoplane |
| 12 | 2775507177 | Bacillus sp. AFS055030 | Isolate | Unclassified |
| 13 | 2775507192 | Bacillus sp. AFS041924 | Isolate | Unclassified |
| 14 | 2788500588 | Lysinibacillus sp. YS11 | Isolate | Unclassified |
| 15 | 2808606399 | Bacillus sp. SJZ110 | Isolate | Rhizosphere |
| 16 | 2811994870 | Bacillus sp. JB4 | Isolate | Unclassified |
| 17 | 2816332186 | Peribacillus frigoritolerans 3612 | Isolate | Unclassified |
| 18 | 2818991441 | Niallia circulans 3243 | Isolate | Rhizosphere |
| 19 | 2818991443 | Bacillus thuringiensis 1230 | Isolate | Unclassified |
| 20 | 2818991451 | Lysinibacillus fusiformis 3193 | Isolate | Unclassified |
| 21 | 2842682962 | Bacillus sp. R-72492 | Isolate | Unclassified |
| 22 | 2849139964 | Bacillus sp. R-71875 | Isolate | Unclassified |
| 23 | 2857453340 | Paenibacillus sp. R-74130 | Isolate | Unclassified |
| 24 | 2857460504 | Brevibacillus sp. R-74223 | Isolate | Unclassified |
| 25 | 2857465823 | Brevibacillus sp. R-74266 | Isolate | Unclassified |
| 26 | 2857586860 | Bacillus sp. R-71935 | Isolate | Unclassified |
| 27 | 2857591370 | Brevibacillus sp. R-71934 | Isolate | Unclassified |
| 28 | 2860837431 | Bacillus sp. WR11 | Isolate | Unclassified |
| 29 | 2865002811 | Paenibacillus sp. R-74131 | Isolate | Unclassified |
| 30 | 2881644220 | Siminovitchia terrae LMG 29736 | Isolate | Rhizosphere |
| 31 | 2888578766 | Paenibacillus lycopersici 12200R-189 | Isolate | Rhizosphere |
| 32 | 2898907183 | Brevibacillus sp. SYP-B805 | Isolate | Rhizosphere |
| 33 | 2904606771 | Lysinibacillus macroides 1284 | Isolate | Rhizosphere |
| 34 | 2904755435 | Paenibacillus aceris KACC 19194 | Isolate | Rhizosphere |
| 35 | 2919425241 | Bacillus sp. 3255 | Isolate | Rhizosphere |
| 36 | 2929183550 | Brevibacillus sp. R-71971 Hybrid assembly | Isolate | Unclassified |
| 37 | 2936340661 | Gottfriedia acidiceleris 1-17 | Isolate | Rhizosphere |
| 38 | 2936361878 | Neobacillus endophyticus BRMEA1 | Isolate | Unclassified |
| 39 | 2938917290 | Bacillus sp. CR71 | Isolate | Unclassified |
| 40 | 2939593269 | Lysinibacillus parviboronicapiens 736 | Isolate | Rhizosphere |
| 41 | 2962290636 | Bacillus subtilis TLO3 | Isolate | Rhizosphere |
| 42 | 2964375228 | Anaerobacillus alkaliphilus B16-10 | Isolate | Rhizosphere |
| 43 | 2969136845 | Bacillus subtilis TLO3 | Isolate | Rhizosphere |
| 44 | 2969765954 | Bacillus intestinalis GM2 | Isolate | Rhizosphere |
| 45 | 2969770375 | Bacillus subtilis GM5 | Isolate | Rhizosphere |
| 46 | 2977254563 | Bacillus sp. SORGH_AS 510 | Isolate | Unclassified |
| 47 | 2979083700 | Bacillus toyonensis SORGH_AS 407 | Isolate | Unclassified |
| 48 | 2980125574 | Paenibacillus sp. tmac-D7 | Isolate | Unclassified |
| 49 | 2980492589 | Bacillus subtilis GQJK2 | Isolate | Rhizosphere |
| 50 | 2990275345 | Bacillus sp. SLBN-46 | Isolate | Unclassified |
| 51 | 2996706504 | Paenibacillus sp. OT2-17 | Isolate | Rhizosphere |
| 52 | 3001267043 | Bacillus sp. FJAT-49870 | Isolate | Rhizosphere |
| 53 | 3001272096 | Lederbergia citrisecunda FJAT-49732 | Isolate | Rhizosphere |
| 54 | 3001892409 | Neobacillus rhizophilus FJAT-49825 | Isolate | Rhizosphere |
| 55 | 3006826541 | Bacillus haikouensis CrR16 | Isolate | Unclassified |
| 56 | 3006969106 | Bacillus sp. FJAT-50079 | Isolate | Rhizosphere |
| 57 | 3006973921 | Bacillus sp. FJAT-49736 | Isolate | Rhizosphere |
| 58 | 3006978542 | Bacillus sp. FJAT-49705 | Isolate | Rhizosphere |
| 59 | 3300002987 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB | Metagenome | Endosphere |
| 60 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 61 | 3300003751 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 | Metagenome | Endosphere |
| 62 | 3300003758 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 | Metagenome | Endosphere |
| 63 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 64 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 65 | 3300003841 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 66 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 67 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 68 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300025224 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 70 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 71 | 3300025229 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 72 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 73 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 74 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 75 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 77 | 3300025711 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300027200 | Rhizosphere microbial communities from Harvard Forest, USA - 4Rhizosphere_NRpos metaG (SPAdes) | Metagenome | Rhizosphere |
| 80 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 81 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 82 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 83 | 3300038705 | Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 | Metagenome | Unclassified |
| 84 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 85 | 3300042015 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 | Metagenome | Rhizosphere |
| 86 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300048091 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 89 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 90 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 91 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 92 | 8022653035 | Bacillus sp. Rc4 | Isolate | Unclassified |
| 93 | 8022948649 | Bacillus endophyticus FH5 | Isolate | Rhizosphere |
| 94 | 8054280661 | Metabacillus kandeliae GX 13764 | Isolate | Rhizosphere |
| 95 | 8055531788 | Lysinibacillus pakistanensis LY1 | Isolate | Rhizosphere |
| 96 | 8056533031 | Paenibacillus qinlingensis TEGT-2 | Isolate | Unclassified |
| 97 | 8057632132 | Cytobacillus kochii RZ2 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 46.67 |
| Metatranscriptomes | 0 |
| Isolates | 53.33 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 30.83 |
| Nodule | 0 |
| Rhizoplane | 4.17 |
| Rhizosphere | 36.67 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 28.33 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25159J45721_1006855 | 3300002987 | Bacteria | 3344 |
| 2 | JGI25151J46595_10010651 | 3300003187 | Bacteria | 4258 |
| 3 | JGI25151J46595_10010947 | 3300003187 | Bacteria | 4193 |
| 4 | JGI25151J46595_10018672 | 3300003187 | Bacteria | 2968 |
| 5 | JGI25151J46595_10024262 | 3300003187 | Bacteria | 2483 |
| 6 | JGI25151J46595_10028205 | 3300003187 | Bacteria | 2238 |
| 7 | JGI25151J46595_10053313 | 3300003187 | Bacteria | 1352 |
| 8 | Ga0055538_1000142 | 3300003751 | Bacteria | 50402 |
| 9 | Ga0055532_1000088 | 3300003758 | Bacteria | 106291 |
| 10 | Ga0055535_1008292 | 3300003761 | Bacteria | 1891 |
| 11 | Ga0055536_1017828 | 3300003781 | Bacteria | 2304 |
| 12 | Ga0055541_1001261 | 3300003841 | Bacteria | 5580 |
| 13 | Ga0055541_1001600 | 3300003841 | Bacteria | 4853 |
| 14 | Ga0105244_10005927 | 3300009036 | Bacteria | 8016 |
| 15 | Ga0105244_10118890 | 3300009036 | Bacteria | 1281 |
| 16 | Ga0105250_10118370 | 3300009092 | Bacteria | 1088 |
| 17 | Ga0157371_10083310 | 3300013102 | Bacteria | 2264 |
| 18 | Ga0209784_100129 | 3300025224 | Bacteria | 76203 |
| 19 | Ga0209566_100029 | 3300025225 | Bacteria | 349213 |
| 20 | Ga0209566_100067 | 3300025225 | Bacteria | 180297 |
| 21 | Ga0209566_100676 | 3300025225 | Bacteria | 20192 |
| 22 | Ga0209147_100045 | 3300025229 | Bacteria | 299264 |
| 23 | Ga0209147_100058 | 3300025229 | Bacteria | 252750 |
| 24 | Ga0209258_101566 | 3300025242 | Bacteria | 7625 |
| 25 | Ga0209130_1000713 | 3300025284 | Bacteria | 29522 |
| 26 | Ga0209130_1014996 | 3300025284 | Bacteria | 1925 |
| 27 | Ga0209675_1041727 | 3300025291 | Bacteria | 999 |
| 28 | Ga0209676_1000530 | 3300025292 | Bacteria | 59517 |
| 29 | Ga0209676_1000574 | 3300025292 | Bacteria | 55392 |
| 30 | Ga0209676_1012244 | 3300025292 | Bacteria | 3389 |
| 31 | Ga0209676_1045089 | 3300025292 | Bacteria | 1203 |
| 32 | Ga0209025_1000703 | 3300025294 | Bacteria | 56965 |
| 33 | Ga0209025_1000801 | 3300025294 | Bacteria | 51045 |
| 34 | Ga0209025_1001603 | 3300025294 | Bacteria | 28424 |
| 35 | Ga0209025_1003715 | 3300025294 | Bacteria | 14034 |
| 36 | Ga0209025_1006833 | 3300025294 | Bacteria | 8709 |
| 37 | Ga0209025_1014523 | 3300025294 | Bacteria | 4832 |
| 38 | Ga0209025_1014866 | 3300025294 | Bacteria | 4745 |
| 39 | Ga0209025_1025794 | 3300025294 | Bacteria | 2976 |
| 40 | Ga0209025_1029332 | 3300025294 | Bacteria | 2665 |
| 41 | Ga0209025_1157105 | 3300025294 | Bacteria | 619 |
| 42 | Ga0207696_1004634 | 3300025711 | Bacteria | 5887 |
| 43 | Ga0207655_1001484 | 3300025728 | Bacteria | 21513 |
| 44 | Ga0208976_10223 | 3300027200 | Bacteria | 612 |
| 45 | Ga0395900_0882047 | 3300037418 | Bacteria | 819 |
| 46 | Ga0395898_1684126 | 3300037466 | Bacteria | 557 |
| 47 | Ga0395901_1075619 | 3300038443 | Bacteria | 776 |
| 48 | Ga0237819_01244 | 3300038705 | Bacteria | 7025 |
| 49 | Ga0439449_0050726 | 3300042007 | Bacteria | 1535 |
| 50 | Ga0439462_0114106 | 3300042015 | Bacteria | 749 |
| 51 | Ga0495654_0245679 | 3300046530 | Bacteria | 747 |
| 52 | Ga0495626_0268637 | 3300048091 | Bacteria | 680 |
| 53 | Ga0496108_0481794 | 3300048911 | Bacteria | 1084 |
| 54 | Ga0496110_0024219 | 3300048913 | Bacteria | 5170 |
| 55 | Ga0496111_0206337 | 3300048914 | Bacteria | 1460 |
| 56 | Ga0496112_0023127 | 3300048915 | Bacteria | 5933 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5f6q-assembly1.cif.gz_A | crystal structure of metallothiol transferase from bacillus anthracis str. ames | 0.973 | 1 | 138 |
| 7n7g-assembly1.cif.gz_B | crystal structure of fosb from enterococcus faecium with fosfomycin | 0.9701 | 1 | 138 |
| 7n7g-assembly1.cif.gz_A | crystal structure of fosb from enterococcus faecium with fosfomycin | 0.9697 | 1 | 138 |
| 8dtd-assembly1.cif.gz_A | crystal structure of fosb from bacillus cereus with zinc and phosphonoformate | 0.9693 | 1 | 138 |
| 5f6q-assembly1.cif.gz_A | crystal structure of metallothiol transferase from bacillus anthracis str. ames | 0.9662 | 1 | 138 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4nazA01 | Alpha Beta;Roll;2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1;2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.9286 | 1 | 135 | 3.10.180.10 |
| 2p7kA00 | Alpha Beta;Roll;2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1;2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.9216 | 1 | 125 | 3.10.180.10 |
| 4nazA01 | Alpha Beta;Roll;2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1;2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.9145 | 1 | 135 | 3.10.180.10 |
| 2p7kA00 | Alpha Beta;Roll;2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1;2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.9144 | 1 | 125 | 3.10.180.10 |
| 5wewB00 | Alpha Beta;Roll;2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1;2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.8902 | 1 | 138 | 3.10.180.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A6N3WIW1-F1-model_v4 | deleted | 0.981 | 3 | 138 |
|
| AF-A0A417Z0G9-F1-model_v4 | Metallothiol transferase FosB (EC 2.5.1.-) (Fosfomycin resistance protein) | 0.9807 | 2 | 138 |
GO:0000287
GO:0005737 GO:0016765 GO:0046677 |
| AF-A0A3G8R461-F1-model_v4 | Metallothiol transferase FosB (EC 2.5.1.-) (Fosfomycin resistance protein) | 0.9806 | 1 | 138 |
GO:0000287
GO:0005737 GO:0016765 GO:0046677 |
| AF-A0A7X9MVQ3-F1-model_v4 | Metallothiol transferase FosB (EC 2.5.1.-) (Fosfomycin resistance protein) | 0.9804 | 2 | 138 |
GO:0000287
GO:0005737 GO:0016765 GO:0046677 |
| AF-A0A4R1B1M7-F1-model_v4 | Metallothiol transferase FosB (EC 2.5.1.-) (Fosfomycin resistance protein) | 0.9799 | 1 | 138 |
GO:0000287
GO:0005737 GO:0016747 GO:0016765 GO:0046677 |
Predicted Structure (AlphaFold2)
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