F103421

General Info

Members Datasets Scaffolds Average Seq Length
119 96 117 381

Family's Representative Sequence

Representative Sequence 3300049580|Ga0501046_0010039|Ga0501046_0010039_6366_7676
Length 436
Sequence MPVEGVQGREQSAGPGRRKAESGKFSRPGNKPPPVRTEINRLVENLLTLPLAPRLLSPADPMRFSLRTVLPVLVAALLAARSHAQDTIKIGEFASMTGKEATFGQFADKGTRQAIEEVNAAGGVLGRKIELLLEDNQSKPGESATIVKKFISRDKVVAVLGEIVSSRTLEAAPICQNARIPLVSPGATAPEVTMKGDYIFRACFIDPFVGTITAKFARDTLKVRRAAILSSVSSAQSVGLAKFFRERFTAEGGTIVAEQKFSEGDKDFRAQLTAIKATGAEGIFIPAYYTEAALICKQARDLGLTVPLLGTDGWESADFLAIGGAAVEGCYLVTHYSPENQSPLVAAFNARFQQRWGVPSNALSALGYDSAMMLIDALKRAGTTDGPKLRDALATTKNFAGVAGTITLDANRNPTKSAVVLTVKHGRFAFLQDVSP

Samples

Sample ID Description Type Environment
1 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
2 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
27 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
28 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
43 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
44 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
48 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
49 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
52 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
53 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
57 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
58 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
59 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
60 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
61 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
62 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
63 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
64 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
65 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
66 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
67 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
68 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
69 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
70 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
71 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
75 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
82 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
83 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
84 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
85 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
94 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
95 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
96 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.04
Nodule 0
Rhizoplane 0.84
Rhizosphere 92.44
Stem 0
Stem Tuber 0
Unclassified 1.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24746J21847_1000546 3300001977 Bacteria 5656
2 Ga0055530_10008876 3300003791 Bacteria 3956
3 Ga0070658_10001603 3300005327 Bacteria 19126
4 Ga0070683_100056353 3300005329 Bacteria 3650
5 Ga0070670_100179140 3300005331 Bacteria 1840
6 Ga0070670_100246957 3300005331 Bacteria 1554
7 Ga0070689_100072921 3300005340 Bacteria 2684
8 Ga0070689_100124155 3300005340 Bacteria 2064
9 Ga0070661_100270025 3300005344 Bacteria 1317
10 Ga0070688_100169676 3300005365 Bacteria 1505
11 Ga0068867_100000178 3300005459 Bacteria 41802
12 Ga0070679_100013552 3300005530 Bacteria 7811
13 Ga0070686_100181695 3300005544 Bacteria 1495
14 Ga0070695_100175845 3300005545 Unclassified 1513
15 Ga0068855_100029874 3300005563 Bacteria 6518
16 Ga0070664_100004064 3300005564 Bacteria 11755
17 Ga0068857_100009422 3300005577 Bacteria 8474
18 Ga0068857_100086762 3300005577 Bacteria 2799
19 Ga0068856_100000080 3300005614 Bacteria 90679
20 Ga0068856_100104403 3300005614 Bacteria 2828
21 Ga0068863_100112079 3300005841 Bacteria 2598
22 Ga0068858_100040729 3300005842 Bacteria 4309
23 Ga0068865_100131761 3300006881 Bacteria 1874
24 Ga0068865_100181224 3300006881 Bacteria 1622
25 Ga0111539_10443808 3300009094 Bacteria 1511
26 Ga0105245_10026303 3300009098 Bacteria 5121
27 Ga0105243_10000066 3300009148 Bacteria 124400
28 Ga0105238_10134747 3300009551 Bacteria 2448
29 Ga0157373_10002339 3300013100 Bacteria 14379
30 Ga0157370_10000042 3300013104 Bacteria 133711
31 Ga0163163_10373057 3300014325 Unclassified 1484
32 Ga0157377_10002052 3300014745 Bacteria 8829
33 Ga0209050_1004094 3300025298 Bacteria 10188
34 Ga0207705_10003560 3300025909 Bacteria 11859
35 Ga0207705_10306278 3300025909 Unclassified 1219
36 Ga0207649_10233200 3300025920 Bacteria 1317
37 Ga0207694_10085813 3300025924 Bacteria 2478
38 Ga0207687_10133529 3300025927 Bacteria 1874
39 Ga0207686_10093278 3300025934 Bacteria 1993
40 Ga0207709_10000115 3300025935 Bacteria 124385
41 Ga0207670_10012238 3300025936 Bacteria 5011
42 Ga0207670_10110002 3300025936 Bacteria 1984
43 Ga0207661_10004628 3300025944 Bacteria 9639
44 Ga0207679_10029597 3300025945 Bacteria 3814
45 Ga0207702_10003265 3300026078 Bacteria 14973
46 Ga0207641_10145670 3300026088 Bacteria 2141
47 Ga0207648_10000012 3300026089 Bacteria 176268
48 Ga0207674_10094871 3300026116 Bacteria 2969
49 Ga0207674_10312655 3300026116 Bacteria 1520
50 Ga0265319_1000003 3300028563 Bacteria 340561
51 Ga0265319_1000072 3300028563 Bacteria 81225
52 Ga0265318_10001201 3300028577 Bacteria 15807
53 Ga0265336_10008657 3300028666 Bacteria 3554
54 Ga0307515_10081544 3300028794 Bacteria 4200
55 Ga0265338_10060529 3300028800 Bacteria 3326
56 Ga0265324_10022296 3300029957 Bacteria 2265
57 Ga0265320_10001144 3300031240 Bacteria 19514
58 Ga0265320_10016938 3300031240 Bacteria 4064
59 Ga0265339_10027121 3300031249 Bacteria 3275
60 Ga0265327_10000621 3300031251 Bacteria 58361
61 Ga0265327_10014985 3300031251 Bacteria 5039
62 Ga0307408_100000175 3300031548 Bacteria 72054
63 Ga0265313_10000476 3300031595 Bacteria 41955
64 Ga0265313_10002157 3300031595 Bacteria 17470
65 Ga0307508_10000024 3300031616 Bacteria 176806
66 Ga0265314_10001780 3300031711 Bacteria 23256
67 Ga0265314_10005809 3300031711 Bacteria 11053
68 Ga0307412_10000025 3300031911 Bacteria 235413
69 Ga0373930_0000383 3300034816 Bacteria 5829
70 Ga0373944_0000321 3300035089 Bacteria 10722
71 Ga0373951_0001703 3300035091 Bacteria 5745
72 Ga0373932_0000004 3300035112 Bacteria 412176
73 Ga0373945_0027406 3300035116 Bacteria 1990
74 Ga0373962_0000015 3300035242 Bacteria 48259
75 Ga0373931_0000036 3300035691 Bacteria 79351
76 Ga0373935_0033004 3300035692 Bacteria 3220
77 Ga0373935_0057658 3300035692 Bacteria 2478
78 Ga0373927_0024682 3300035695 Bacteria 3928
79 Ga0373947_0009870 3300035725 Bacteria 5481
80 Ga0373937_0268711 3300036401 Bacteria 1609
81 Ga0373925_0000522 3300037068 Bacteria 38320
82 Ga0450890_000278 3300042127 Bacteria 7519
83 Ga0450892_000163 3300042130 Bacteria 7653
84 Ga0451577_0004835 3300042876 Bacteria 14063
85 Ga0453683_0005286 3300044673 Bacteria 9033
86 Ga0466966_0021593 3300044684 Bacteria 4228
87 Ga0466961_0088897 3300044693 Bacteria 1951
88 Ga0453684_0016725 3300044712 Bacteria 11439
89 Ga0453684_0042506 3300044712 Bacteria 6126
90 Ga0453684_0258860 3300044712 Bacteria 1994
91 Ga0466968_0039752 3300044735 Bacteria 1981
92 Ga0451576_0000075 3300045051 Bacteria 247981
93 Ga0451576_0000445 3300045051 Bacteria 93977
94 Ga0451576_0001682 3300045051 Bacteria 36626
95 Ga0451576_0010019 3300045051 Bacteria 10919
96 Ga0451576_0071325 3300045051 Bacteria 3615
97 Ga0495651_0109488 3300046462 Bacteria 2045
98 Ga0495594_0171684 3300046499 Unclassified 1234
99 Ga0495630_0012443 3300046517 Bacteria 6179
100 Ga0495630_0013613 3300046517 Bacteria 5917
101 Ga0495640_0087637 3300046533 Bacteria 2058
102 Ga0495586_0031755 3300046535 Bacteria 2830
103 Ga0495621_0036017 3300046539 Bacteria 1716
104 Ga0495645_0077227 3300046543 Bacteria 2395
105 Ga0495599_0042629 3300046678 Bacteria 2848
106 Ga0496115_0005258 3300048918 Bacteria 9408
107 Ga0501032_0043418 3300049569 Bacteria 3045
108 Ga0501033_0044485 3300049570 Unclassified 3305
109 Ga0501046_0010039 3300049580 Bacteria 8156
110 Ga0501047_0009208 3300049581 Bacteria 9321
111 Ga0501080_0018571 3300049742 Bacteria 6435
112 Ga0501035_0008354 3300049822 Bacteria 9637
113 nmdc:mga05p37_385021_c1 3300050507 Bacteria 1642
114 Ga0500650_0105063 3300053098 Bacteria 1320
115 Ga0500559_0059918 3300053136 Bacteria 1695
116 Ga0500568_0013972 3300053139 Bacteria 3641
117 Ga0500622_0007978 3300053156 Bacteria 5961

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035692 Ga0373935_0057658 Ga0373935_0057658_1022_2143 355
2 3300045051 Ga0451576_0001682 Ga0451576_0001682_14123_15244 357
3 3300025920 Ga0207649_10233200 Ga0207649_102332001 360
4 3300050507 nmdc:mga05p37_385021_c1 nmdc:mga05p37_385021_c1_310_1479 361
5 3300046462 Ga0495651_0109488 Ga0495651_0109488_524_1681 365
6 3300046517 Ga0495630_0013613 Ga0495630_0013613_4117_5274 365
7 3300005577 Ga0068857_100009422 Ga0068857_1000094222 366
8 3300026116 Ga0207674_10094871 Ga0207674_100948713 366
9 3300028794 Ga0307515_10081544 Ga0307515_100815444 367
10 3300005545 Ga0070695_100175845 Ga0070695_1001758452 369
11 3300036401 Ga0373937_0268711 Ga0373937_0268711_185_1342 369
12 3300044684 Ga0466966_0021593 Ga0466966_0021593_417_1541 369
13 3300046533 Ga0495640_0087637 Ga0495640_0087637_373_1530 369
14 3300046535 Ga0495586_0031755 Ga0495586_0031755_884_2041 369
15 3300025909 Ga0207705_10306278 Ga0207705_103062781 370
16 3300031240 Ga0265320_10001144 Ga0265320_1000114415 371
17 3300031251 Ga0265327_10000621 Ga0265327_100006213 371
18 3300031595 Ga0265313_10000476 Ga0265313_1000047627 371
19 3300031711 Ga0265314_10005809 Ga0265314_100058095 371
20 3300044712 Ga0453684_0016725 Ga0453684_0016725_8044_9159 371
21 3300044712 Ga0453684_0016725 Ga0453684_0016725_9172_10287 371
22 3300053139 Ga0500568_0013972 Ga0500568_0013972_757_1872 371
23 3300005329 Ga0070683_100056353 Ga0070683_1000563532 372
24 3300005530 Ga0070679_100013552 Ga0070679_1000135523 372
25 3300005614 Ga0068856_100104403 Ga0068856_1001044032 372
26 3300025944 Ga0207661_10004628 Ga0207661_100046282 372
27 3300028563 Ga0265319_1000072 Ga0265319_100007211 372
28 3300028577 Ga0265318_10001201 Ga0265318_1000120111 372
29 3300028666 Ga0265336_10008657 Ga0265336_100086572 372
30 3300031240 Ga0265320_10016938 Ga0265320_100169382 372
31 3300031251 Ga0265327_10000621 Ga0265327_100006212 372
32 3300031711 Ga0265314_10001780 Ga0265314_1000178016 372
33 3300035692 Ga0373935_0033004 Ga0373935_0033004_818_1945 372
34 3300044673 Ga0453683_0005286 Ga0453683_0005286_2764_3960 372
35 3300044712 Ga0453684_0042506 Ga0453684_0042506_2687_3811 372
36 3300044712 Ga0453684_0258860 Ga0453684_0258860_319_1437 372
37 3300044735 Ga0466968_0039752 Ga0466968_0039752_742_1866 372
38 3300045051 Ga0451576_0010019 Ga0451576_0010019_2874_3992 372
39 3300046517 Ga0495630_0012443 Ga0495630_0012443_2471_3607 372
40 3300049580 Ga0501046_0010039 Ga0501046_0010039_6366_7676 372
41 3300049581 Ga0501047_0009208 Ga0501047_0009208_2859_4169 372
42 3300049822 Ga0501035_0008354 Ga0501035_0008354_5668_6978 372
43 3300053156 Ga0500622_0007978 Ga0500622_0007978_2913_4046 372
44 3300014325 Ga0163163_10373057 Ga0163163_103730571 373
45 3300031616 Ga0307508_10000024 Ga0307508_10000024160 373
46 3300045051 Ga0451576_0000445 Ga0451576_0000445_59722_60858 373
47 3300045051 Ga0451576_0000075 Ga0451576_0000075_186740_187879 374
48 3300046539 Ga0495621_0036017 Ga0495621_0036017_381_1517 374
49 3300044693 Ga0466961_0088897 Ga0466961_0088897_310_1452 375
50 3300045051 Ga0451576_0071325 Ga0451576_0071325_622_1785 375
51 3300009094 Ga0111539_10443808 Ga0111539_104438082 377
52 3300026116 Ga0207674_10312655 Ga0207674_103126551 377
53 3300005327 Ga0070658_10001603 Ga0070658_100016038 378
54 3300005340 Ga0070689_100124155 Ga0070689_1001241552 378
55 3300005344 Ga0070661_100270025 Ga0070661_1002700251 378
56 3300005365 Ga0070688_100169676 Ga0070688_1001696761 378
57 3300005841 Ga0068863_100112079 Ga0068863_1001120793 378
58 3300009551 Ga0105238_10134747 Ga0105238_101347472 378
59 3300013100 Ga0157373_10002339 Ga0157373_1000233911 378
60 3300013104 Ga0157370_10000042 Ga0157370_100000426 378
61 3300025909 Ga0207705_10003560 Ga0207705_100035606 378
62 3300025924 Ga0207694_10085813 Ga0207694_100858133 378
63 3300025936 Ga0207670_10012238 Ga0207670_100122383 378
64 3300025936 Ga0207670_10110002 Ga0207670_101100022 378
65 3300026088 Ga0207641_10145670 Ga0207641_101456702 378
66 3300031251 Ga0265327_10014985 Ga0265327_100149853 378
67 3300046543 Ga0495645_0077227 Ga0495645_0077227_502_1677 378
68 3300046678 Ga0495599_0042629 Ga0495599_0042629_1054_2199 378
69 3300053098 Ga0500650_0105063 Ga0500650_0105063_147_1292 378
70 3300005331 Ga0070670_100179140 Ga0070670_1001791402 379
71 3300005842 Ga0068858_100040729 Ga0068858_1000407291 379
72 3300025934 Ga0207686_10093278 Ga0207686_100932782 379
73 3300031249 Ga0265339_10027121 Ga0265339_100271212 379
74 3300046499 Ga0495594_0171684 Ga0495594_0171684_59_1216 379
75 3300003791 Ga0055530_10008876 Ga0055530_100088762 380
76 3300005331 Ga0070670_100246957 Ga0070670_1002469571 380
77 3300005340 Ga0070689_100072921 Ga0070689_1000729214 380
78 3300005544 Ga0070686_100181695 Ga0070686_1001816952 380
79 3300005563 Ga0068855_100029874 Ga0068855_1000298744 380
80 3300005614 Ga0068856_100000080 Ga0068856_10000008020 380
81 3300025298 Ga0209050_1004094 Ga0209050_10040943 380
82 3300026078 Ga0207702_10003265 Ga0207702_100032654 380
83 3300028563 Ga0265319_1000003 Ga0265319_100000333 380
84 3300028800 Ga0265338_10060529 Ga0265338_100605292 380
85 3300029957 Ga0265324_10022296 Ga0265324_100222961 380
86 3300031595 Ga0265313_10002157 Ga0265313_100021573 380
87 3300034816 Ga0373930_0000383 Ga0373930_0000383_1209_2360 380
88 3300035089 Ga0373944_0000321 Ga0373944_0000321_6157_7308 380
89 3300035091 Ga0373951_0001703 Ga0373951_0001703_3044_4195 380
90 3300035112 Ga0373932_0000004 Ga0373932_0000004_257148_258299 380
91 3300035116 Ga0373945_0027406 Ga0373945_0027406_538_1689 380
92 3300035242 Ga0373962_0000015 Ga0373962_0000015_25328_26479 380
93 3300035691 Ga0373931_0000036 Ga0373931_0000036_66994_68145 380
94 3300035695 Ga0373927_0024682 Ga0373927_0024682_1720_2871 380
95 3300035725 Ga0373947_0009870 Ga0373947_0009870_3753_4904 380
96 3300037068 Ga0373925_0000522 Ga0373925_0000522_21397_22548 380
97 3300048918 Ga0496115_0005258 Ga0496115_0005258_3662_4927 380
98 3300049570 Ga0501033_0044485 Ga0501033_0044485_1948_3111 380
99 3300049742 Ga0501080_0018571 Ga0501080_0018571_1551_2693 380
100 3300001977 JGI24746J21847_1000546 JGI24746J21847_10005465 381
101 3300005459 Ga0068867_100000178 Ga0068867_10000017823 381
102 3300005564 Ga0070664_100004064 Ga0070664_1000040647 381
103 3300005577 Ga0068857_100086762 Ga0068857_1000867623 381
104 3300006881 Ga0068865_100131761 Ga0068865_1001317612 381
105 3300006881 Ga0068865_100181224 Ga0068865_1001812242 381
106 3300009098 Ga0105245_10026303 Ga0105245_100263034 381
107 3300009148 Ga0105243_10000066 Ga0105243_1000006697 381
108 3300014745 Ga0157377_10002052 Ga0157377_1000205210 381
109 3300025927 Ga0207687_10133529 Ga0207687_101335292 381
110 3300025935 Ga0207709_10000115 Ga0207709_1000011597 381
111 3300025945 Ga0207679_10029597 Ga0207679_100295972 381
112 3300026089 Ga0207648_10000012 Ga0207648_1000001224 381
113 3300031548 Ga0307408_100000175 Ga0307408_10000017527 381
114 3300031911 Ga0307412_10000025 Ga0307412_1000002523 381
115 3300042127 Ga0450890_000278 Ga0450890_000278_6140_7285 381
116 3300042130 Ga0450892_000163 Ga0450892_000163_6100_7245 381
117 3300042876 Ga0451577_0004835 Ga0451577_0004835_11851_13059 381
118 3300049569 Ga0501032_0043418 Ga0501032_0043418_1419_2564 381
119 3300053136 Ga0500559_0059918 Ga0500559_0059918_97_1245 381

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13458

Peripla_BP_6

Periplasmic binding protein

87

427

0.94

PF13433

Peripla_BP_5

Periplasmic binding protein domain

88

181

0.93

PF01094

ANF_receptor

Receptor family ligand binding region

107

426

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gnr-assembly1.cif.gz_A 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. canada mdr_19a in complex with isoleucine 0.9551 31 381
3td9-assembly1.cif.gz_A-2 crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution 0.95 31 381
4gnr-assembly1.cif.gz_A 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. canada mdr_19a in complex with isoleucine 0.9498 31 381
3td9-assembly1.cif.gz_A-2 crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution 0.9396 31 381
1z18-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9258 31 377
ID Description Score Start End Superfamily
4gnrA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9704 151 276 3.40.50.2300
1usiA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9612 151 276 3.40.50.2300
3ipcA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.96 151 278 3.40.50.2300
4gnrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9566 31 359 3.40.50.2300
4n0qA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9564 151 278 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A1V5L2U9-F1-model_v4 Leucine-binding protein domain-containing protein 0.9804 58 381
AF-A0A4Q3AHA2-F1-model_v4 Ethanolamine utilization protein EutJ 0.9709 231 381
AF-A0A7W0NQT0-F1-model_v4 ABC transporter substrate-binding protein 0.9675 20 381 GO:0006865
AF-A0A7X6JV89-F1-model_v4 deleted 0.9642 56 381
AF-A0A661JB98-F1-model_v4 Branched-chain amino acid ABC transporter substrate-binding protein 0.9592 31 381

Feature Viewer

pLDDT pTM Quality
91.81 0.88 High
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Predicted Structure (AlphaFold2)

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