F103277

General Info

Members Datasets Scaffolds Average Seq Length
119 104 238 795

Family's Representative Sequence

Representative Sequence 3300048929|Ga0496126_0016498|Ga0496126_0016498_1297_3903
Length 868
Sequence MYRWKLAFDVVSHGSTKSLVSGPDSHARQFAPESSYLCAKLRAHQGKGVTVDGAGQGDSVEAEVWDLCDADEKVADDTVYLVAAALRGDEELAEQLGGQAPAPQRPEAATPDGPPPLRAFLRSITVSGFRGIGARTTLELNPYCGITVISGRNGSGKSSFAEALEYALTGTSYRWANKKGQHWEASWRNLHAGEPAAITVDFAMEPDDKRAGTTASVGVDWPAGGKKDAAERWSQIKGQKREPVSALGWQSALNTYRPLMSYDELGGLFEEGQSALYDALNILLNLDEISAADARLKQVEKKLGEPRKAATEARTRLRQTLDGVDDPRAAQVKKLTAKTPYDLAAITATTLGTATDQASTIARLRTVAALEVPDAVKATEVANELREAIEAHASGADDEVKALAARAGLLRDALHLHSDAGDGTCPVCETGQLDAAWRTAAEERLREVDAITAKHQQVTQRLTRARSAAARFFDEVSAVAVVEGVELTALSTFGRALTDARAVPGSVADLPAHVETSTAELVAAADLLRAEAGERADELEDAWAPTARLISAWIEKETSARQDDERLQRVKAAVTWLRKCADTLRERRLAPMVTQAGEIWSRMRHESNVDIVNITLEGAATRRHVVVDGTVDGVPAGALSVMSQGELHALALALFIPRATTPASPFRFLVLDDPIQAMDPAKIGGFLDVLGELAKTRQVIVFSHDDRLPAAIRARSVPAQLLDVTREQGSQVVMKENDLPANRHVADAVALILDDDMDELIKRKAVPGLFRMAIEAAAHQRFYTDRTRAGSAYHETDAAWEGAKNTQHCVALALNGDASSDISSWKSFRAHRFPTLAICATGVHKGATLDRGTIKDLRETVRDIVEGR

Samples

Sample ID Description Type Environment
1 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
29 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
39 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
40 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
41 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
42 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
43 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
44 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
45 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
46 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
47 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
48 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
49 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
50 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
51 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
52 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
53 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
54 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
55 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
56 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
57 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
58 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
59 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
60 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
68 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
69 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
70 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
72 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
73 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
74 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
75 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
76 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
77 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
78 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
79 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
80 2517572101 Frankia sp. DC12 Isolate Nodule
81 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
82 2643221548 Streptomyces sp. Root55 Isolate Unclassified
83 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
84 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
85 2687453737 Frankia sp. BMG5.36 Isolate Nodule
86 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
87 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
88 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
89 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
90 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
91 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
92 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
93 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
94 2902582711 Micromonospora sp. AP08 Isolate Unclassified
95 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
96 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
97 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
98 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
99 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
100 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
101 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
102 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
103 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
104 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 77.31
Metatranscriptomes 0
Isolates 22.69

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.36
Nodule 2.52
Rhizoplane 10.08
Rhizosphere 57.98
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496126_0016498 3300048929 Bacteria 7382
2 JGI25406J46586_10001706 3300003203 Bacteria 10340
3 Ga0055540_1003280 3300003792 Bacteria 7909
4 Ga0070680_100018570 3300005336 Bacteria 5496
5 Ga0070675_100001477 3300005354 Bacteria 17343
6 Ga0070674_100036651 3300005356 Bacteria 3294
7 Ga0070667_100002500 3300005367 Bacteria 16042
8 Ga0070706_100065039 3300005467 Bacteria 3372
9 Ga0070707_100103248 3300005468 Bacteria 2762
10 Ga0070698_100009337 3300005471 Bacteria 10516
11 Ga0070699_100011266 3300005518 Bacteria 7724
12 Ga0070679_100033938 3300005530 Bacteria 5055
13 Ga0070697_100010293 3300005536 Bacteria 7290
14 Ga0070695_100029629 3300005545 Bacteria 3401
15 Ga0068864_100025161 3300005618 Bacteria 5011
16 Ga0068862_100000248 3300005844 Bacteria 60212
17 Ga0068862_100035871 3300005844 Bacteria 4202
18 Ga0081455_10001991 3300005937 Bacteria 24400
19 Ga0081539_10000777 3300005985 Bacteria 62303
20 Ga0075428_100008196 3300006844 Bacteria 11595
21 Ga0075428_100010746 3300006844 Bacteria 10176
22 Ga0075428_100036742 3300006844 Bacteria 5394
23 Ga0075430_100015141 3300006846 Bacteria 6566
24 Ga0075431_100000569 3300006847 Bacteria 31186
25 Ga0075433_10009789 3300006852 Bacteria 7680
26 Ga0075434_100106915 3300006871 Bacteria 2808
27 Ga0075429_100015798 3300006880 Bacteria 6538
28 Ga0111539_10000971 3300009094 Bacteria 37659
29 Ga0111539_10077159 3300009094 Bacteria 3922
30 Ga0114129_10010848 3300009147 Bacteria 12980
31 Ga0105249_10008742 3300009553 Bacteria 8836
32 Ga0157380_10033882 3300014326 Bacteria 3935
33 Ga0209051_1000834 3300025303 Bacteria 31757
34 Ga0207684_10005726 3300025910 Bacteria 11409
35 Ga0207652_10017009 3300025921 Bacteria 5948
36 Ga0207646_10000023 3300025922 Bacteria 255171
37 Ga0207646_10011618 3300025922 Bacteria 8514
38 Ga0207659_10033986 3300025926 Bacteria 3513
39 Ga0207669_10017737 3300025937 Bacteria 3660
40 Ga0207658_10001087 3300025986 Bacteria 22000
41 Ga0207683_10019602 3300026121 Bacteria 5779
42 Ga0268265_10000005 3300028380 Bacteria 535350
43 Ga0268265_10026378 3300028380 Bacteria 4134
44 Ga0265327_10000891 3300031251 Bacteria 44046
45 Ga0307508_10000977 3300031616 Bacteria 33258
46 Ga0307514_10006175 3300031649 Bacteria 10511
47 Ga0307516_10003328 3300031730 Bacteria 20797
48 Ga0307516_10016173 3300031730 Bacteria 7816
49 Ga0307507_10028086 3300033179 Bacteria 6007
50 Ga0373935_0006769 3300035692 Bacteria 6848
51 Ga0466967_0012550 3300045976 Bacteria 6488
52 Ga0496100_0000261 3300048903 Bacteria 26830
53 Ga0496100_0015205 3300048903 Bacteria 4490
54 Ga0496101_0000047 3300048904 Bacteria 152715
55 Ga0496101_0037577 3300048904 Bacteria 3435
56 Ga0496101_0042620 3300048904 Plasmid 3240
57 Ga0496102_0000412 3300048905 Bacteria 49768
58 Ga0496104_0002754 3300048907 Bacteria 15136
59 Ga0496106_0001776 3300048909 Bacteria 16097
60 Ga0496107_0026524 3300048910 Bacteria 4108
61 Ga0496108_0000016 3300048911 Bacteria 237051
62 Ga0496114_0000383 3300048917 Bacteria 32692
63 Ga0496114_0002843 3300048917 Bacteria 13271
64 Ga0496116_0004136 3300048919 Bacteria 13981
65 Ga0496117_0000930 3300048920 Bacteria 44808
66 Ga0496118_0000917 3300048921 Bacteria 46085
67 Ga0496119_0001929 3300048922 Bacteria 23653
68 Ga0496119_0003801 3300048922 Bacteria 15440
69 Ga0496120_0001443 3300048923 Bacteria 28518
70 Ga0496121_0000019 3300048924 Bacteria 499976
71 Ga0496125_0025163 3300048928 Bacteria 5458
72 Ga0501031_0043611 3300049568 Bacteria 2926
73 Ga0501036_0007870 3300049572 Bacteria 8718
74 Ga0501039_0001364 3300049575 Bacteria 17919
75 Ga0501040_0002093 3300049576 Bacteria 12861
76 Ga0501041_0011583 3300049577 Bacteria 5217
77 Ga0501042_0010447 3300049578 Bacteria 6227
78 Ga0501046_0016586 3300049580 Bacteria 6164
79 Ga0501046_0031921 3300049580 Bacteria 4267
80 Ga0501072_0025183 3300049588 Bacteria 4633
81 Ga0501076_0001943 3300049592 Bacteria 14113
82 Ga0501081_0082043 3300049743 Bacteria 2259
83 Ga0501035_0046248 3300049822 Bacteria 3914
84 Ga0501045_0052912 3300049824 Bacteria 2966
85 nmdc:mga05p37_140033_c1 3300050507 Bacteria 2964
86 nmdc:mga09592_14869_c1 3300050508 Bacteria 6356
87 nmdc:mga0qj67_18016_c1 3300050509 Bacteria 5379
88 nmdc:mga06r32_379_c1 3300050510 Bacteria 37393
89 nmdc:mga0n895_26087_c1 3300050512 Bacteria 5528
90 nmdc:mga0a205_30827_c1 3300050515 Bacteria 5136
91 Ga0500616_0001774 3300053153 Bacteria 19708
92 Ga0500645_000029 3300053730 Bacteria 122362
93 2517763410 2517572101 Bacteria 6884336
94 2623500848 2622736605 Bacteria 4992138
95 2643762195 2643221548 Bacteria 8053412
96 2644459026 2643221682 Bacteria 6743283
97 2676480017 2675903059 Bacteria 8644972
98 2689959987 2687453737 Bacteria 11203906
99 2753036852 2751185725 Bacteria 5740550
100 2753037571 2751185725 Bacteria 5740550
101 2753324722 2751185792 Bacteria 5739090
102 2753325439 2751185792 Bacteria 5739090
103 2812351055 2811994878 Bacteria 5992952
104 2832008911 2832004796 Bacteria 6538017
105 2842891772 2842888712 Bacteria 4279094
106 2866067055 2866065130 Bacteria 6518152
107 2867304410 2867302475 Bacteria 7087181
108 2867323569 2867319477 Bacteria 7069771
109 2902585247 2902582711 Bacteria 6187705
110 2902815681 2902810491 Bacteria 6794147
111 2904540466 2904535858 Bacteria 6308016
112 2904770704 2904765812 Bacteria 5369154
113 2904776205 2904770941 Bacteria 5580202
114 2908816665 2908811453 Bacteria 5478616
115 2919424937 2919420072 Bacteria 5390363
116 2919437583 2919432681 Bacteria 5390474
117 8003830598 8003830390 Bacteria 6541657
118 8003862070 8003856774 Bacteria 7675274
119 8055415541 8055412473 Bacteria 6257500
120 Ga0496126_0016498
121 JGI25406J46586_10001706
122 Ga0055540_1003280
123 Ga0070680_100018570
124 Ga0070675_100001477
125 Ga0070674_100036651
126 Ga0070667_100002500
127 Ga0070706_100065039
128 Ga0070707_100103248
129 Ga0070698_100009337
130 Ga0070699_100011266
131 Ga0070679_100033938
132 Ga0070697_100010293
133 Ga0070695_100029629
134 Ga0068864_100025161
135 Ga0068862_100000248
136 Ga0068862_100035871
137 Ga0081455_10001991
138 Ga0081539_10000777
139 Ga0075428_100008196
140 Ga0075428_100010746
141 Ga0075428_100036742
142 Ga0075430_100015141
143 Ga0075431_100000569
144 Ga0075433_10009789
145 Ga0075434_100106915
146 Ga0075429_100015798
147 Ga0111539_10000971
148 Ga0111539_10077159
149 Ga0114129_10010848
150 Ga0105249_10008742
151 Ga0157380_10033882
152 Ga0209051_1000834
153 Ga0207684_10005726
154 Ga0207652_10017009
155 Ga0207646_10000023
156 Ga0207646_10011618
157 Ga0207659_10033986
158 Ga0207669_10017737
159 Ga0207658_10001087
160 Ga0207683_10019602
161 Ga0268265_10000005
162 Ga0268265_10026378
163 Ga0265327_10000891
164 Ga0307508_10000977
165 Ga0307514_10006175
166 Ga0307516_10003328
167 Ga0307516_10016173
168 Ga0307507_10028086
169 Ga0373935_0006769
170 Ga0466967_0012550
171 Ga0496100_0000261
172 Ga0496100_0015205
173 Ga0496101_0000047
174 Ga0496101_0037577
175 Ga0496101_0042620
176 Ga0496102_0000412
177 Ga0496104_0002754
178 Ga0496106_0001776
179 Ga0496107_0026524
180 Ga0496108_0000016
181 Ga0496114_0000383
182 Ga0496114_0002843
183 Ga0496116_0004136
184 Ga0496117_0000930
185 Ga0496118_0000917
186 Ga0496119_0001929
187 Ga0496119_0003801
188 Ga0496120_0001443
189 Ga0496121_0000019
190 Ga0496125_0025163
191 Ga0501031_0043611
192 Ga0501036_0007870
193 Ga0501039_0001364
194 Ga0501040_0002093
195 Ga0501041_0011583
196 Ga0501042_0010447
197 Ga0501046_0016586
198 Ga0501046_0031921
199 Ga0501072_0025183
200 Ga0501076_0001943
201 Ga0501081_0082043
202 Ga0501035_0046248
203 Ga0501045_0052912
204 nmdc:mga05p37_140033_c1
205 nmdc:mga09592_14869_c1
206 nmdc:mga0qj67_18016_c1
207 nmdc:mga06r32_379_c1
208 nmdc:mga0n895_26087_c1
209 nmdc:mga0a205_30827_c1
210 Ga0500616_0001774
211 Ga0500645_000029
212 2517763410
213 2623500848
214 2643762195
215 2644459026
216 2676480017
217 2689959987
218 2753036852
219 2753037571
220 2753324722
221 2753325439
222 2812351055
223 2832008911
224 2842891772
225 2866067055
226 2867304410
227 2867323569
228 2902585247
229 2902815681
230 2904540466
231 2904770704
232 2904776205
233 2908816665
234 2919424937
235 2919437583
236 8003830598
237 8003862070
238 8055415541

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02463

SMC_N

RecF/RecN/SMC N terminal domain

120

725

0.92

PF13175

AAA_15

AAA ATPase domain

120

320

0.77

PF13476

AAA_23

AAA domain

123

389

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1f2u-assembly1.cif.gz_D crystal structure of rad50 abc-atpase 0.8032 513 663
3kta-assembly2.cif.gz_D structural basis for adenylate kinase activity in abc atpases 0.7913 513 663
1w1w-assembly5.cif.gz_A sc smc1hd:scc1-c complex, atpgs 0.7831 65 661
1f2u-assembly1.cif.gz_D crystal structure of rad50 abc-atpase 0.7788 513 663
1xex-assembly1.cif.gz_B-2 structural biochemistry of atp-driven dimerization and dna stimulated activation of smc atpases. 0.7645 507 674
ID Description Score Start End Superfamily
af_A0A1D6DXP2_296_452_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8214 561 630 3.40.50.300
2o5vA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7907 62 171 3.40.50.300
1w1wA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7831 65 661 3.40.50.300
af_O95347_1025_1191_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.782 514 664 3.40.50.300
af_A4I2P8_1496_1744_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7785 566 661 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1W9YSI1-F1-model_v4 Rad50/SbcC-type AAA domain-containing protein 0.9402 53 176 GO:0006302
GO:0016887
AF-A0A4U0SPT6-F1-model_v4 DUF4145 domain-containing protein 0.8364 625 794
AF-A0A4U0SPT6-F1-model_v4 DUF4145 domain-containing protein 0.8066 625 794
AF-A0A378X2F1-F1-model_v4 Predicted ATPase 0.7894 405 795 GO:0005524
GO:0016887
AF-A0A1Q8Y1D4-F1-model_v4 deleted 0.7655 471 790

Map