F102832

General Info

Members Datasets Scaffolds Average Seq Length
119 89 116 793

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0030093|Ga0466967_0030093_235_2736
Length 833
Sequence MAAEQESPQEGACRQRNQSEEKEIVPQHRVEPPLAGYTVIDLSTGIAGAYCTKLLADGGADIVKVESPEGDPLRAWSASGAAIPSGSDGALFSFLAGGKHSVVADPASDDDIDLVNRLLGCADAVIWSSGSKVAEHEDFTPRAIHGRHPHLTVTSITPFGLDGPWCDRVATEFTLQAWSGGIVGLGRGEQQRPPVFVGGQVGEYLAGVYASVATLASRWRRIDGGPGELLDLSILETQILSLTYYPVTYFEILGRPWRDMRRPTIPGVAEAKDGLVDLGCGTAQQWFDLCAMVGHPEWIDEELSMTITESANVYADEIYAWVASTPVDEIRELATAFRIPNAPVANGANVTSFDQFVERNSFVRNPRDGFTQPSHPYRLRPARLRDPQPAPRLGEHTEHYRGADLPARPAPTGVVKAMPLSGIRVLDMTTFWAGPCGTHLLAMLGAEVIHVESTRRPDGTRLIAGIPITEDQWWEKSPIFEALNTNKKGLTLDLQSPRGRELLRKLIATCDVIVENFTPRVLDQIGLDFAAIQSIRPDAALVRMPGFGLEGPWRDNPAFAYVIEAASGVSWLTGYPDRTPYDPYSIGDPNAGVHAVNAVLLALEHRRRTGEGVFVEAAMVDAALSIAAEQVIEYSAYGALLERAGNRGPTATPQNLYRSADIDEFGRLDSWVAIAVATDDHWEKLCRALGSPSWATDPELSTEGGRRRHQDSIDKQLAVWCERRSRDEIVATLWDAGVPVAKVMQPHRQTELEQLAFRDFFEEVDHPVNGPARLSTVPMRFSAGPHKFHIEHAPLLGQHNHELLSGLGLSDSDIAGLEADGVIGSAPAMRARS

Samples

Sample ID Description Type Environment
1 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
2 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
3 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
17 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
18 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
19 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
25 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
33 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
34 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
35 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
36 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
37 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
38 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
39 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
40 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
41 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
42 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
43 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
44 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
45 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
46 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
49 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
52 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
53 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
54 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
55 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
56 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
57 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
58 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
59 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
60 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
61 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
62 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
63 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
64 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
65 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
66 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
74 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
82 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
83 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
84 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
85 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
86 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
89 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.48
Metatranscriptomes 0
Isolates 2.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.65
Nodule 0.84
Rhizoplane 6.72
Rhizosphere 62.18
Stem 0
Stem Tuber 0
Unclassified 12.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070680_100004473 3300005336 Bacteria 10528
2 Ga0070668_100003129 3300005347 Bacteria 12228
3 Ga0070667_100015940 3300005367 Bacteria 6218
4 Ga0070714_100065016 3300005435 Bacteria 3141
5 Ga0070713_100025352 3300005436 Bacteria 4635
6 Ga0070663_100024566 3300005455 Bacteria 4059
7 Ga0070681_10000054 3300005458 Bacteria 80396
8 Ga0070679_100000625 3300005530 Bacteria 30111
9 Ga0070665_100004946 3300005548 Bacteria 13817
10 Ga0081455_10004749 3300005937 Bacteria 15104
11 Ga0081455_10062758 3300005937 Bacteria 3121
12 Ga0081538_10001962 3300005981 Bacteria 20598
13 Ga0075365_10001238 3300006038 Bacteria 11301
14 Ga0075363_100000181 3300006048 Bacteria 16603
15 Ga0075363_100000224 3300006048 Bacteria 15782
16 Ga0075363_100000301 3300006048 Bacteria 14480
17 Ga0075363_100002272 3300006048 Bacteria 7789
18 Ga0075364_10000413 3300006051 Bacteria 21390
19 Ga0075364_10001691 3300006051 Bacteria 12112
20 Ga0075364_10007307 3300006051 Bacteria 6556
21 Ga0075364_10035093 3300006051 Bacteria 3240
22 Ga0075367_10002974 3300006178 Bacteria 7926
23 Ga0075369_10010973 3300006186 Bacteria 3554
24 Ga0075370_10001308 3300006353 Bacteria 10655
25 Ga0075370_10005235 3300006353 Bacteria 6416
26 Ga0075370_10019350 3300006353 Bacteria 3708
27 Ga0075428_100081028 3300006844 Bacteria 3543
28 Ga0075431_100082225 3300006847 Bacteria 3325
29 Ga0114129_10009255 3300009147 Bacteria 14047
30 Ga0213876_10000960 3300021384 Bacteria 18968
31 Ga0213876_10009608 3300021384 Bacteria 5203
32 Ga0213876_10010592 3300021384 Bacteria 4941
33 Ga0207707_10000970 3300025912 Bacteria 27583
34 Ga0207652_10000033 3300025921 Bacteria 139131
35 Ga0207668_10000921 3300025972 Bacteria 17714
36 Ga0207678_10003908 3300026067 Bacteria 13401
37 Ga0207641_10008314 3300026088 Bacteria 8576
38 Ga0268266_10018225 3300028379 Bacteria 5986
39 Ga0265334_10000352 3300028573 Bacteria 24678
40 Ga0265318_10006568 3300028577 Bacteria 5339
41 Ga0265336_10001179 3300028666 Bacteria 12415
42 Ga0265338_10001934 3300028800 Bacteria 32315
43 Ga0265338_10002405 3300028800 Bacteria 28155
44 Ga0265338_10057355 3300028800 Bacteria 3446
45 Ga0307512_10005906 3300030522 Bacteria 12584
46 Ga0307512_10007861 3300030522 Bacteria 10486
47 Ga0265332_10000856 3300031238 Bacteria 18431
48 Ga0265325_10001265 3300031241 Bacteria 17984
49 Ga0265314_10001642 3300031711 Bacteria 24477
50 Ga0265342_10001468 3300031712 Bacteria 21929
51 Ga0373962_0004036 3300035242 Bacteria 3537
52 Ga0373925_0000053 3300037068 Bacteria 125353
53 Ga0436364_0943073 3300037853 Bacteria 18642
54 Ga0436364_1293573 3300037853 Bacteria 3716
55 Ga0436365_0302812 3300039437 Bacteria 15951
56 Ga0436365_0951197 3300039437 Bacteria 22250
57 Ga0436365_1135686 3300039437 Bacteria 41937
58 Ga0436365_1245893 3300039437 Bacteria 16868
59 Ga0439466_0005599 3300041411 Bacteria 4792
60 Ga0466972_0008012 3300044658 Bacteria 5295
61 Ga0466963_0027698 3300044694 Bacteria 3632
62 Ga0466957_0001457 3300044842 Bacteria 12397
63 Ga0466960_0000194 3300044901 Bacteria 20982
64 Ga0466958_0041645 3300045836 Bacteria 2763
65 Ga0466967_0012151 3300045976 Bacteria 6569
66 Ga0466967_0030093 3300045976 Bacteria 4553
67 Ga0466967_0064324 3300045976 Bacteria 3262
68 Ga0495651_0004750 3300046462 Bacteria 10399
69 Ga0495582_0029921 3300046473 Bacteria 2989
70 Ga0495657_0002221 3300046675 Bacteria 16437
71 Ga0495581_0017081 3300047315 Bacteria 4218
72 Ga0495676_0043077 3300047321 Bacteria 3698
73 Ga0495687_000271 3300047443 Bacteria 68795
74 Ga0495593_0005355 3300047673 Bacteria 7589
75 Ga0496100_0002947 3300048903 Bacteria 8755
76 Ga0496102_0025606 3300048905 Bacteria 5254
77 Ga0496104_0011430 3300048907 Bacteria 7952
78 Ga0496105_0087078 3300048908 Bacteria 2581
79 Ga0496112_0001686 3300048915 Bacteria 17213
80 Ga0496112_0013354 3300048915 Bacteria 7581
81 Ga0496115_0005204 3300048918 Bacteria 9459
82 Ga0496115_0060163 3300048918 Bacteria 3060
83 Ga0496118_0000185 3300048921 Bacteria 109095
84 Ga0496126_0000104 3300048929 Bacteria 200735
85 Ga0501033_0013778 3300049570 Bacteria 6151
86 Ga0501033_0018883 3300049570 Bacteria 5211
87 Ga0501034_0017490 3300049571 Bacteria 7353
88 Ga0501037_0022383 3300049573 Bacteria 4676
89 Ga0501037_0025915 3300049573 Bacteria 4331
90 Ga0501039_0015526 3300049575 Bacteria 5829
91 Ga0501043_0038488 3300049579 Bacteria 3760
92 Ga0501047_0024881 3300049581 Bacteria 5749
93 Ga0501048_0011773 3300049582 Bacteria 6520
94 Ga0501067_0026706 3300049583 Bacteria 3197
95 Ga0501069_0000119 3300049585 Bacteria 34987
96 Ga0501070_0000582 3300049586 Bacteria 33274
97 Ga0501070_0001728 3300049586 Bacteria 19317
98 Ga0501070_0012738 3300049586 Bacteria 7090
99 Ga0501070_0023226 3300049586 Bacteria 5195
100 Ga0501071_0001005 3300049587 Bacteria 15501
101 Ga0501073_0020788 3300049589 Bacteria 4733
102 Ga0501079_0004549 3300049741 Bacteria 10280
103 Ga0501080_0000648 3300049742 Bacteria 27604
104 Ga0501080_0002001 3300049742 Bacteria 17589
105 Ga0501080_0016168 3300049742 Bacteria 6888
106 Ga0501035_0000385 3300049822 Bacteria 50730
107 Ga0501044_0004907 3300049823 Bacteria 14950
108 nmdc:mga03n38_2838_c1 3300050490 Bacteria 5451
109 nmdc:mga00v17_1755_c1 3300050491 Bacteria 11272
110 nmdc:mga0yw44_1859_c2 3300050492 Bacteria 7719
111 nmdc:mga06z11_10399_c1 3300050494 Bacteria 3963
112 nmdc:mga07m45_3716_c1 3300050496 Bacteria 7382
113 nmdc:mga07m45_854_c2 3300050496 Bacteria 11617
114 nmdc:mga06r32_11062_c1 3300050510 Bacteria 8123
115 Ga0495619_0022781 3300053085 Bacteria 4011
116 Ga0500562_001845 3300053108 Bacteria 5315

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048908 Ga0496105_0087078 Ga0496105_0087078_532_2568 646
2 3300044694 Ga0466963_0027698 Ga0466963_0027698_630_2969 756
3 3300005436 Ga0070713_100025352 Ga0070713_1000253522 757
4 3300048903 Ga0496100_0002947 Ga0496100_0002947_247_2616 757
5 3300048905 Ga0496102_0025606 Ga0496102_0025606_671_3040 757
6 3300048918 Ga0496115_0005204 Ga0496115_0005204_6016_8385 757
7 3300006844 Ga0075428_100081028 Ga0075428_1000810283 759
8 3300048929 Ga0496126_0000104 Ga0496126_0000104_136822_139179 759
9 3300049742 Ga0501080_0016168 Ga0501080_0016168_2835_5189 759
10 3300021384 Ga0213876_10000960 Ga0213876_100009604 760
11 3300039437 Ga0436365_1135686 Ga0436365_1135686_2669_4972 760
12 3300049586 Ga0501070_0001728 Ga0501070_0001728_64_2406 760
13 3300053085 Ga0495619_0022781 Ga0495619_0022781_345_2717 763
14 3300006847 Ga0075431_100082225 Ga0075431_1000822251 765
15 3300049741 Ga0501079_0004549 Ga0501079_0004549_1841_4159 771
16 3300049742 Ga0501080_0002001 Ga0501080_0002001_8202_10520 771
17 3300037068 Ga0373925_0000053 Ga0373925_0000053_44405_46924 772
18 3300045976 Ga0466967_0064324 Ga0466967_0064324_572_2890 772
19 3300005455 Ga0070663_100024566 Ga0070663_1000245663 773
20 3300006048 Ga0075363_100002272 Ga0075363_1000022725 773
21 3300021384 Ga0213876_10010592 Ga0213876_100105922 773
22 3300026067 Ga0207678_10003908 Ga0207678_100039085 773
23 3300046462 Ga0495651_0004750 Ga0495651_0004750_3987_6380 773
24 3300046675 Ga0495657_0002221 Ga0495657_0002221_10176_12569 773
25 3300048915 Ga0496112_0013354 Ga0496112_0013354_453_2834 773
26 3300049589 Ga0501073_0020788 Ga0501073_0020788_989_3424 774
27 3300039437 Ga0436365_0302812 Ga0436365_0302812_11127_13517 775
28 3300049573 Ga0501037_0025915 Ga0501037_0025915_947_3325 775
29 3300049575 Ga0501039_0015526 Ga0501039_0015526_690_3122 775
30 3300049586 Ga0501070_0023226 Ga0501070_0023226_1006_3384 775
31 3300005937 Ga0081455_10062758 Ga0081455_100627582 776
32 3300028800 Ga0265338_10057355 Ga0265338_100573552 778
33 3300028573 Ga0265334_10000352 Ga0265334_1000035216 779
34 3300028577 Ga0265318_10006568 Ga0265318_100065683 779
35 3300028666 Ga0265336_10001179 Ga0265336_100011795 779
36 3300028800 Ga0265338_10002405 Ga0265338_100024058 779
37 3300031238 Ga0265332_10000856 Ga0265332_100008563 779
38 3300031241 Ga0265325_10001265 Ga0265325_1000126511 779
39 3300031711 Ga0265314_10001642 Ga0265314_1000164213 779
40 3300031712 Ga0265342_10001468 Ga0265342_1000146819 779
41 3300006048 Ga0075363_100000181 Ga0075363_10000018114 780
42 3300006353 Ga0075370_10001308 Ga0075370_100013088 780
43 3300049583 Ga0501067_0026706 Ga0501067_0026706_544_2955 780
44 3300050496 nmdc:mga07m45_854_c2 nmdc:mga07m45_854_c2_6441_8831 780
45 3300005981 Ga0081538_10001962 Ga0081538_1000196211 781
46 3300006051 Ga0075364_10001691 Ga0075364_100016914 781
47 3300006051 Ga0075364_10035093 Ga0075364_100350932 781
48 3300048921 Ga0496118_0000185 Ga0496118_0000185_58465_60903 781
49 iso_pu_bacteria 2870782633 2870787270 782
50 3300005937 Ga0081455_10004749 Ga0081455_100047497 783
51 3300035242 Ga0373962_0004036 Ga0373962_0004036_797_3286 783
52 3300044842 Ga0466957_0001457 Ga0466957_0001457_1441_3942 783
53 3300045976 Ga0466967_0012151 Ga0466967_0012151_1476_3881 783
54 3300044901 Ga0466960_0000194 Ga0466960_0000194_8134_10635 784
55 3300009147 Ga0114129_10009255 Ga0114129_100092556 785
56 3300028800 Ga0265338_10001934 Ga0265338_100019349 785
57 3300048915 Ga0496112_0001686 Ga0496112_0001686_14350_16740 785
58 3300050510 nmdc:mga06r32_11062_c1 nmdc:mga06r32_11062_c1_4400_6775 785
59 3300005367 Ga0070667_100015940 Ga0070667_1000159402 786
60 3300026088 Ga0207641_10008314 Ga0207641_100083143 786
61 3300048907 Ga0496104_0011430 Ga0496104_0011430_5379_7772 786
62 3300049570 Ga0501033_0018883 Ga0501033_0018883_232_2661 786
63 3300049573 Ga0501037_0022383 Ga0501037_0022383_1566_3995 786
64 3300049579 Ga0501043_0038488 Ga0501043_0038488_232_2661 786
65 3300049582 Ga0501048_0011773 Ga0501048_0011773_683_3112 786
66 3300049823 Ga0501044_0004907 Ga0501044_0004907_10874_13303 786
67 3300005548 Ga0070665_100004946 Ga0070665_10000494612 787
68 3300006186 Ga0075369_10010973 Ga0075369_100109732 787
69 3300028379 Ga0268266_10018225 Ga0268266_100182254 787
70 3300049586 Ga0501070_0012738 Ga0501070_0012738_4379_6778 787
71 3300050491 nmdc:mga00v17_1755_c1 nmdc:mga00v17_1755_c1_3010_5409 787
72 3300050492 nmdc:mga0yw44_1859_c2 nmdc:mga0yw44_1859_c2_4924_7323 787
73 3300050494 nmdc:mga06z11_10399_c1 nmdc:mga06z11_10399_c1_1126_3525 787
74 3300050496 nmdc:mga07m45_3716_c1 nmdc:mga07m45_3716_c1_3075_5474 787
75 iso_pu_bacteria 2842134933 2842140226 787
76 3300021384 Ga0213876_10009608 Ga0213876_100096084 788
77 3300037853 Ga0436364_1293573 Ga0436364_1293573_517_2922 788
78 3300039437 Ga0436365_1245893 Ga0436365_1245893_12324_14729 788
79 3300005435 Ga0070714_100065016 Ga0070714_1000650162 789
80 3300030522 Ga0307512_10007861 Ga0307512_100078614 789
81 3300041411 Ga0439466_0005599 Ga0439466_0005599_158_2554 789
82 3300045836 Ga0466958_0041645 Ga0466958_0041645_40_2487 789
83 iso_pu_bacteria 2929212328 2929216809 791
84 3300006048 Ga0075363_100000301 Ga0075363_1000003015 792
85 3300006353 Ga0075370_10019350 Ga0075370_100193502 792
86 3300044658 Ga0466972_0008012 Ga0466972_0008012_381_2828 792
87 3300046473 Ga0495582_0029921 Ga0495582_0029921_309_2756 792
88 3300047315 Ga0495581_0017081 Ga0495581_0017081_1640_4087 792
89 3300047321 Ga0495676_0043077 Ga0495676_0043077_750_3197 792
90 3300047673 Ga0495593_0005355 Ga0495593_0005355_4806_7253 792
91 3300006038 Ga0075365_10001238 Ga0075365_100012384 793
92 3300006048 Ga0075363_100000224 Ga0075363_10000022413 793
93 3300006051 Ga0075364_10000413 Ga0075364_100004136 793
94 3300006178 Ga0075367_10002974 Ga0075367_100029744 793
95 3300006353 Ga0075370_10005235 Ga0075370_100052354 793
96 3300030522 Ga0307512_10005906 Ga0307512_100059062 793
97 3300037853 Ga0436364_0943073 Ga0436364_0943073_9973_12387 793
98 3300047443 Ga0495687_000271 Ga0495687_000271_18408_20828 793
99 3300048918 Ga0496115_0060163 Ga0496115_0060163_154_2544 793
100 3300006051 Ga0075364_10007307 Ga0075364_100073074 794
101 3300050490 nmdc:mga03n38_2838_c1 nmdc:mga03n38_2838_c1_266_2695 794
102 3300049570 Ga0501033_0013778 Ga0501033_0013778_866_3292 795
103 3300049571 Ga0501034_0017490 Ga0501034_0017490_2476_4902 795
104 3300049581 Ga0501047_0024881 Ga0501047_0024881_2720_5146 795
105 3300049585 Ga0501069_0000119 Ga0501069_0000119_725_3148 795
106 3300049586 Ga0501070_0000582 Ga0501070_0000582_17891_20314 795
107 3300049587 Ga0501071_0001005 Ga0501071_0001005_6491_8914 795
108 3300049742 Ga0501080_0000648 Ga0501080_0000648_14906_17329 795
109 3300049822 Ga0501035_0000385 Ga0501035_0000385_42275_44701 795
110 3300039437 Ga0436365_0951197 Ga0436365_0951197_7014_9443 797
111 3300045976 Ga0466967_0030093 Ga0466967_0030093_235_2736 797
112 3300005347 Ga0070668_100003129 Ga0070668_1000031295 798
113 3300025972 Ga0207668_10000921 Ga0207668_1000092116 798
114 3300053108 Ga0500562_001845 Ga0500562_001845_1689_4118 798
115 3300005336 Ga0070680_100004473 Ga0070680_1000044733 799
116 3300005458 Ga0070681_10000054 Ga0070681_1000005469 799
117 3300005530 Ga0070679_100000625 Ga0070679_1000006259 799
118 3300025912 Ga0207707_10000970 Ga0207707_1000097017 799
119 3300025921 Ga0207652_10000033 Ga0207652_10000033130 799

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02515

CoA_transf_3

CoA-transferase family III

420

800

0.97

PF02515

CoA_transf_3

CoA-transferase family III

34

397

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ed9-assembly1.cif.gz_A-2 crystal structure of a caib/baif family protein from brucella suis 0.9118 382 771
4hl6-assembly2.cif.gz_C yfde from escherichia coli 0.91 383 773
4hl6-assembly2.cif.gz_C yfde from escherichia coli 0.9031 383 773
4ed9-assembly1.cif.gz_A-2 crystal structure of a caib/baif family protein from brucella suis 0.9026 382 771
5yx6-assembly2.cif.gz_D crystal structure of rv3272 from m. tuberculosis orthorhombic form 0.9013 382 765
ID Description Score Start End Superfamily
1x74D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9408 387 578 3.40.50.10540
af_Q4V9F2_1_227_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9407 404 617 3.40.50.10540
af_Q9VIK0_1_211_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9271 382 598 3.40.50.10540
4hl6E02 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9108 609 708 3.30.1540.10
4hl6D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9102 383 609 3.40.50.10540
ID Description Score Start End GO Terms
AF-A0A1S1RFV3-F1-model_v4 deleted 0.9602 3 793
AF-A0A1V3WVM3-F1-model_v4 CoA-transferase III family protein 0.9598 13 165 GO:0016740
AF-A0A2E9D899-F1-model_v4 Carnitine dehydratase 0.9569 382 788 GO:0008410
AF-A0A7Z9F076-F1-model_v4 CoA transferase 0.9497 382 661 GO:0016740
AF-A0A1S1RFV3-F1-model_v4 deleted 0.9496 3 793

Feature Viewer

pLDDT pTM Quality
91.49 0.94 High
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Predicted Structure (AlphaFold2)

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